Your message dated Sat, 22 Jul 2023 12:27:51 +0000
with message-id <e1qnbib-003geq...@fasolo.debian.org>
and subject line Bug#1034852: fixed in r-bioc-annotationhub 3.8.0+dfsg-1
has caused the Debian Bug report #1034852,
regarding r-bioc-annotationhub: autopkgtest regression: download failed
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1034852: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1034852
Debian Bug Tracking System
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--- Begin Message ---
Source: r-bioc-annotationhub
Version: 3.6.0+dfsg-1
Severity: serious
Control: tags -1 bookworm-ignore
User: debian...@lists.debian.org
Usertags: regression
Dear maintainer(s),
Your package has an autopkgtest, great. However, it fails since April
2023. Can you please investigate the situation and fix it? I copied some
of the output at the bottom of this report.
The release team has announced [1] that failing autopkgtest on amd64 and
arm64 are considered RC in testing. [Release Team member hat on] Because
we're currently in the hard freeze for bookworm, I have marked this bug
as bookworm-ignore. Targeted fixes are still welcome.
More information about this bug and the reason for filing it can be
found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://lists.debian.org/debian-devel-announce/2019/07/msg00002.html
https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-annotationhub/33053151/log.gz
RUNIT TEST PROTOCOL -- Fri Apr 21 23:47:54 2023
***********************************************
Number of test functions: 19
Number of errors: 0
Number of failures: 2
1 Test Suite :
AnnotationHub RUnit Tests - 19 test functions, 0 errors, 2 failures
FAILURE in test_accessors_setters: Error in
checkIdentical(dates[length(dates)], hubDate(ah)) : FALSE
FAILURE in test_db_connections: Error in checkIdentical(ids2,
AnnotationHub:::.db_uid(hub)) : FALSE
Test files with failing tests
test_AnnotationHub-class.R
test_accessors_setters
test_db_utils.R
test_db_connections
Error in BiocGenerics:::testPackage("AnnotationHub") :
unit tests failed for package AnnotationHub
In addition: Warning message:
download failed
hub path: ‘bogus/url’
cache resource: ‘AHInvalid : 5012’
reason: all(rtype == "web" | file.exists(fpath)) is not TRUE
Execution halted
OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: r-bioc-annotationhub
Source-Version: 3.8.0+dfsg-1
Done: Andreas Tille <ti...@debian.org>
We believe that the bug you reported is fixed in the latest version of
r-bioc-annotationhub, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1034...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated r-bioc-annotationhub
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 22 Jul 2023 12:39:15 +0200
Source: r-bioc-annotationhub
Architecture: source
Version: 3.8.0+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-t...@alioth-lists.debian.net>
Changed-By: Andreas Tille <ti...@debian.org>
Closes: 1034852
Changes:
r-bioc-annotationhub (3.8.0+dfsg-1) unstable; urgency=medium
.
* Rebuild against latest r-base
Closes: #1034852
* New upstream version
* Standards-Version: 4.6.2 (routine-update)
* dh-update-R to update Build-Depends (routine-update)
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