Source: gemmi Version: 0.6.2+ds-3 Severity: serious Justification: FTBFS Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-20230726 ftbfs-trixie
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' > make[2]: Nothing to be done for 'preinstall'. > make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' > Install the project... > /usr/bin/cmake -P cmake_install.cmake > -- Install configuration: "None" > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/binner.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/atof.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/sfcalc.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/dirwalk.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/eig3.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/cif2mtz.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/reciproc.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/scaling.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/read_map.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/formfact.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/input.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/fprime.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/twin.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/iterator.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/util.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/gz.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/bond_idx.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/chemcomp_xyz.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/elem.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/assembly.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/c4322.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/bessel.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/refln.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/smcif.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/calculate.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/to_pdb.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/crd.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/cellred.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/chemcomp.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/enumstr.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/floodfill.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/riding_h.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/sprintf.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/mmcif_impl.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/mmread_gz.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/read_cif.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/align.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/span.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/pdb.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/remarks.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/xds_ascii.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/seqid.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/qcp.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/version.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/addends.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/linkhunt.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/cifdoc.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/resinfo.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/neutron92.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/asudata.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/cif.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/interop.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/monlib.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/atox.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/contact.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/pdb_id.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/fourier.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/to_cif.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/math.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/levmar.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/unitcell.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/small.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/dencalc.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/fileutil.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/solmask.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/mmcif.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/metadata.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/mtz.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/mtz2cif.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/to_chemcomp.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/neighbor.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/modify.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/symmetry.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/stats.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/fstream.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/recgrid.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/mmread.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/merge.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/ccp4.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/model.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/to_mmcif.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/json.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/seqalign.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/topo.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/mmdb.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/numb.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/to_json.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/polyheur.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/asumask.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/third_party > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/third_party/pocketfft_hdronly.h > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/third_party/fast_float.h > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/third_party/tinydir.h > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/third_party/sajson.h > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/blob.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/select.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/it92.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/utf.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/fail.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/grid.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/gemmi/pirfasta.hpp > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/bin/gemmi > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libgemmi_cpp.a > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/gemmi/gemmi-targets.cmake > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/gemmi/gemmi-targets-none.cmake > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/gemmi/gemmi-config.cmake > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/gemmi/gemmi-config-version.cmake > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi.cpython-311-x86_64-linux-gnu.so > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/maskcheck.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/__pycache__ > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/monomers.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/rama_gather.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/hello.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/map2mtz.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/aafreq.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/refln-stats.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/__init__.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/ccd_gi.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/matthews.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/from_json.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/mtz_i_sigi.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/mtrix_iso.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/merge_mtz_mmcif.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/maskdiff.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/patterson_slice.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/col_order.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/__main__.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/multiproc.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/simple_search.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/sub_ccd.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/cif_i_sigi.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/weight.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/long_geom.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/rama_plot.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/ccd_subgraph.py > make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' > dh_install -O--buildsystem=cmake > dh_install: warning: Cannot find (any matches for) "usr/lib/python3" (tried > in ., debian/tmp) > > dh_install: warning: python3-gemmi missing files: usr/lib/python3 > dh_install: error: missing files, aborting > make: *** [debian/rules:8: binary] Error 25 The full build log is available from: http://qa-logs.debian.net/2023/07/26/gemmi_0.6.2+ds-3_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20230726;[email protected] or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20230726&[email protected]&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
