Your message dated Tue, 22 Aug 2023 20:29:46 +0200
with message-id <58a388e3-c40f-f426-e16b-3d404e45e...@debian.org>
and subject line Re: pbbam FTBFS with pbcopper 2.2.0
has caused the Debian Bug report #1043584,
regarding pbbam FTBFS with pbcopper 2.2.0
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1043584: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1043584
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: pbbam
Version: 2.1.0+dfsg-2
Severity: serious
Tags: ftbfs trixie sid
Forwarded:
https://github.com/PacificBiosciences/pbbam/commit/1142a51493d2b047f6f8c71931ced230f593ef2b
https://buildd.debian.org/status/fetch.php?pkg=pbbam&arch=amd64&ver=2.1.0%2Bdfsg-2%2Bb1&stamp=1691776254&raw=0
...
FAILED: src/libpbbam.so.2.1.0.p/AlignmentPrinter.cpp.o
c++ -Isrc/libpbbam.so.2.1.0.p -Isrc -I../src -Iinclude -I../include
-fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch
-Wextra -Wpedantic -std=c++20 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond
-Wduplicated-branches -Wlogical-op -Wrestrict -Wnull-dereference -Wuseless-cast
-Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ
src/libpbbam.so.2.1.0.p/AlignmentPrinter.cpp.o -MF
src/libpbbam.so.2.1.0.p/AlignmentPrinter.cpp.o.d -o
src/libpbbam.so.2.1.0.p/AlignmentPrinter.cpp.o -c ../src/AlignmentPrinter.cpp
In file included from ../include/pbbam/AlignmentPrinter.h:6,
from ../src/AlignmentPrinter.cpp:3:
../include/pbbam/BamRecord.h:1525:50: error: ‘UnmappedPosition’ is not a member
of ‘PacBio::Data’; did you mean ‘PacBio::BAM::UnmappedPosition’?
1525 | mutable Data::Position alignedStart_ = Data::UnmappedPosition;
| ^~~~~~~~~~~~~~~~
...
--- End Message ---
--- Begin Message ---
Version: 2.3.0+dfsg-1
Fixed by new release
OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
