Your message dated Fri, 6 Oct 2023 21:44:01 +0200
with message-id <74f1d507-382d-4c8f-9c16-f24fa7495...@debian.org>
and subject line Re: sarsen: autopkgtest needs update for python-xarray
2023.08.0
has caused the Debian Bug report #1050832,
regarding sarsen: autopkgtest failures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1050832: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1050832
Debian Bug Tracking System
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--- Begin Message ---
Source: sarsen
Version: 0.9.3+ds-2
Severity: serious
Hello, looks like something (new python-xarray?) broke autopkgtests for this
package:
https://ci.debian.net/data/autopkgtest/unstable/amd64/s/sarsen/37316930/log.gz
63s autopkgtest [23:46:19]: test python3: [-----------------------
63s === python3.11 ===
64s ============================= test session starts
==============================
64s platform linux -- Python 3.11.5, pytest-7.4.0, pluggy-1.3.0 --
/usr/bin/python3.11
64s cachedir: .pytest_cache
64s rootdir: /tmp/autopkgtest-lxc.1xlnzicc/downtmp
64s collecting ... collected 30 items / 2 deselected / 28 selected
64s
64s ../build.0ip/src/tests/test_10_chunking.py::test_compute_chunk_1d PASSED [
3%]
64s ../build.0ip/src/tests/test_10_chunking.py::test_compute_chunks PASSED [
7%]
64s ../build.0ip/src/tests/test_10_chunking.py::test_map_ovelap PASSED [
10%]
64s ../build.0ip/src/tests/test_10_datamodel.py::test_SarProduct PASSED [
14%]
64s
../build.0ip/src/tests/test_10_orbit.py::test_OrbitPolyfitIterpolator_datetime64
PASSED [ 17%]
64s
../build.0ip/src/tests/test_10_orbit.py::test_OrbitPolyfitIterpolator_timedelta64
PASSED [ 21%]
64s ../build.0ip/src/tests/test_10_scene.py::test_convert_to_dem_3d PASSED [
25%]
65s ../build.0ip/src/tests/test_10_scene.py::test_transform_dem_3d PASSED [
28%]
65s ../build.0ip/src/tests/test_10_scene.py::test_compute_dem_oriented_area
FAILED [ 32%]
65s ../build.0ip/src/tests/test_20_geocoding.py::test_secant_method PASSED [
35%]
65s
../build.0ip/src/tests/test_20_geocoding.py::test_zero_doppler_plane_distance
PASSED [ 39%]
65s ../build.0ip/src/tests/test_20_geocoding.py::test_backward_geocode PASSED
[ 42%]
66s ../build.0ip/src/tests/test_20_sentinel1.py::test_product_info PASSED [
46%]
67s ../build.0ip/src/tests/test_30_radiometry.py::test_compute_gamma_area
FAILED [ 50%]
67s
../build.0ip/src/tests/test_50_apps.py::test_terrain_correction_gtc[data_path0-IW/VV]
SKIPPED [ 53%]
67s
../build.0ip/src/tests/test_50_apps.py::test_terrain_correction_gtc[data_path1-IW1/VV]
SKIPPED [ 57%]
67s
../build.0ip/src/tests/test_50_apps.py::test_terrain_correction_fast_rtc[data_path0-IW/VV]
SKIPPED [ 60%]
67s
../build.0ip/src/tests/test_50_apps.py::test_terrain_correction_fast_rtc[data_path1-IW1/VV]
SKIPPED [ 64%]
67s
../build.0ip/src/tests/test_50_apps.py::test_terrain_correction_rtc[data_path0-IW/VV]
SKIPPED [ 67%]
67s
../build.0ip/src/tests/test_50_apps.py::test_terrain_correction_rtc[data_path1-IW1/VV]
SKIPPED [ 71%]
67s
../build.0ip/src/tests/test_50_apps.py::test_terrain_correction_gtc_dask[data_path0-IW/VV]
SKIPPED [ 75%]
67s
../build.0ip/src/tests/test_50_apps.py::test_terrain_correction_gtc_dask[data_path1-IW1/VV]
SKIPPED [ 78%]
67s
../build.0ip/src/tests/test_50_apps.py::test_terrain_correction_fast_rtc_dask[data_path0-IW/VV]
SKIPPED [ 82%]
67s
../build.0ip/src/tests/test_50_apps.py::test_terrain_correction_fast_rtc_dask[data_path1-IW1/VV]
SKIPPED [ 85%]
67s
../build.0ip/src/tests/test_50_apps.py::test_terrain_correction_rtc_dask[data_path0-IW/VV]
SKIPPED [ 89%]
67s
../build.0ip/src/tests/test_50_apps.py::test_terrain_correction_rtc_dask[data_path1-IW1/VV]
SKIPPED [ 92%]
67s ../build.0ip/src/tests/test_60_main.py::test_main PASSED [
96%]
67s ../build.0ip/src/tests/test_90_sarsen.py::test_version PASSED
[100%]
67s
67s =================================== FAILURES
===================================
67s ________________________ test_compute_dem_oriented_area
________________________
67s
67s dem_raster = <xarray.DataArray 'dem' (y: 360, x: 360)>
67s [129600 values with dtype=float32]
67s Coordinates:
67s * x (x) float64....05
67s spatial_ref int64 ...
67s Attributes:
67s AREA_OR_POINT: Area
67s units: m
67s long_name: elevation
67s
67s def test_compute_dem_oriented_area(dem_raster: xr.DataArray) -> None:
67s dem_3d = scene.convert_to_dem_3d(dem_raster)
67s
67s > res = scene.compute_dem_oriented_area(dem_3d)
67s
67s ../build.0ip/src/tests/test_10_scene.py:39:
67s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
_ _ _
67s /usr/lib/python3/dist-packages/sarsen/scene.py:110: in
compute_dem_oriented_area
67s cross_2 = xr.cross(dx2, dy2, dim="axis") / 2
67s /usr/lib/python3/dist-packages/xarray/core/computation.py:1609: in cross
67s c = apply_ufunc(
67s /usr/lib/python3/dist-packages/xarray/core/computation.py:1197: in
apply_ufunc
67s return apply_dataarray_vfunc(
67s /usr/lib/python3/dist-packages/xarray/core/computation.py:288: in
apply_dataarray_vfunc
67s args = deep_align(
67s /usr/lib/python3/dist-packages/xarray/core/alignment.py:847: in deep_align
67s aligned = align(
67s /usr/lib/python3/dist-packages/xarray/core/alignment.py:783: in align
67s aligner.align()
67s /usr/lib/python3/dist-packages/xarray/core/alignment.py:568: in align
67s self.align_indexes()
67s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
_ _ _
67s
67s self = <xarray.core.alignment.Aligner object at 0x7f9478e9f250>
67s
67s def align_indexes(self) -> None:
67s """Compute all aligned indexes and their corresponding coordinate
variables."""
67s
67s aligned_indexes = {}
67s aligned_index_vars = {}
67s reindex = {}
67s new_indexes = {}
67s new_index_vars = {}
67s
67s for key, matching_indexes in self.all_indexes.items():
67s matching_index_vars = self.all_index_vars[key]
67s dims = {d for coord in matching_index_vars[0].values() for d
in coord.dims}
67s index_cls = key[1]
67s
67s if self.join == "override":
67s joined_index = matching_indexes[0]
67s joined_index_vars = matching_index_vars[0]
67s need_reindex = False
67s elif key in self.indexes:
67s joined_index = self.indexes[key]
67s joined_index_vars = self.index_vars[key]
67s cmp_indexes = list(
67s zip(
67s [joined_index] + matching_indexes,
67s [joined_index_vars] + matching_index_vars,
67s )
67s )
67s need_reindex = self._need_reindex(dims, cmp_indexes)
67s else:
67s if len(matching_indexes) > 1:
67s need_reindex = self._need_reindex(
67s dims,
67s list(zip(matching_indexes, matching_index_vars)),
67s )
67s else:
67s need_reindex = False
67s if need_reindex:
67s if self.join == "exact":
67s > raise ValueError(
67s "cannot align objects with join='exact' where "
67s "index/labels/sizes are not equal along "
67s "these coordinates (dimensions): "
67s + ", ".join(f"{name!r} {dims!r}" for name,
dims in key[0])
67s )
67s E ValueError: cannot align objects with join='exact'
where index/labels/sizes are not equal along these coordinates (dimensions):
'x' ('x',)
67s
67s /usr/lib/python3/dist-packages/xarray/core/alignment.py:415: ValueError
67s ___________________________ test_compute_gamma_area
____________________________
67s
67s dem_ecef = <xarray.DataArray 'dem_3d' (axis: 3, y: 360, x: 360)>
67s array([[[4639071.14581699, 4639064.72787912, 4639056.85736609, .... 0
67s * y (y) float64 41.95 41.95 41.95 41.95 ... 42.05 42.05 42.05
42.05
67s * axis (axis) int64 0 1 2
67s
67s def test_compute_gamma_area(dem_ecef: xr.DataArray) -> None:
67s dem_direction = xr.DataArray()
67s > res = radiometry.compute_gamma_area(dem_ecef, dem_direction)
67s
67s ../build.0ip/src/tests/test_30_radiometry.py:8:
67s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
_ _ _
67s /usr/lib/python3/dist-packages/sarsen/radiometry.py:56: in
compute_gamma_area
67s dem_oriented_area = scene.compute_dem_oriented_area(dem_ecef)
67s /usr/lib/python3/dist-packages/sarsen/scene.py:110: in
compute_dem_oriented_area
67s cross_2 = xr.cross(dx2, dy2, dim="axis") / 2
67s /usr/lib/python3/dist-packages/xarray/core/computation.py:1609: in cross
67s c = apply_ufunc(
67s /usr/lib/python3/dist-packages/xarray/core/computation.py:1197: in
apply_ufunc
67s return apply_dataarray_vfunc(
67s /usr/lib/python3/dist-packages/xarray/core/computation.py:288: in
apply_dataarray_vfunc
67s args = deep_align(
67s /usr/lib/python3/dist-packages/xarray/core/alignment.py:847: in deep_align
67s aligned = align(
67s /usr/lib/python3/dist-packages/xarray/core/alignment.py:783: in align
67s aligner.align()
67s /usr/lib/python3/dist-packages/xarray/core/alignment.py:568: in align
67s self.align_indexes()
67s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
_ _ _
67s
67s self = <xarray.core.alignment.Aligner object at 0x7f9478151d10>
67s
67s def align_indexes(self) -> None:
67s """Compute all aligned indexes and their corresponding coordinate
variables."""
67s
67s aligned_indexes = {}
67s aligned_index_vars = {}
67s reindex = {}
67s new_indexes = {}
67s new_index_vars = {}
67s
67s for key, matching_indexes in self.all_indexes.items():
67s matching_index_vars = self.all_index_vars[key]
67s dims = {d for coord in matching_index_vars[0].values() for d
in coord.dims}
67s index_cls = key[1]
67s
67s if self.join == "override":
67s joined_index = matching_indexes[0]
67s joined_index_vars = matching_index_vars[0]
67s need_reindex = False
67s elif key in self.indexes:
67s joined_index = self.indexes[key]
67s joined_index_vars = self.index_vars[key]
67s cmp_indexes = list(
67s zip(
67s [joined_index] + matching_indexes,
67s [joined_index_vars] + matching_index_vars,
67s )
67s )
67s need_reindex = self._need_reindex(dims, cmp_indexes)
67s else:
67s if len(matching_indexes) > 1:
67s need_reindex = self._need_reindex(
67s dims,
67s list(zip(matching_indexes, matching_index_vars)),
67s )
67s else:
67s need_reindex = False
67s if need_reindex:
67s if self.join == "exact":
67s > raise ValueError(
67s "cannot align objects with join='exact' where "
67s "index/labels/sizes are not equal along "
67s "these coordinates (dimensions): "
67s + ", ".join(f"{name!r} {dims!r}" for name,
dims in key[0])
67s )
67s E ValueError: cannot align objects with join='exact'
where index/labels/sizes are not equal along these coordinates (dimensions):
'x' ('x',)
67s
67s /usr/lib/python3/dist-packages/xarray/core/alignment.py:415: ValueError
67s =============================== warnings summary
===============================
67s ../../../../usr/lib/python3/dist-packages/xarray_sentinel/esa_safe.py:7
67s /usr/lib/python3/dist-packages/xarray_sentinel/esa_safe.py:7:
DeprecationWarning: pkg_resources is deprecated as an API. See
https://setuptools.pypa.io/en/latest/pkg_resources.html
67s import pkg_resources
67s
67s build.0ip/src/tests/test_20_geocoding.py::test_secant_method
67s /usr/lib/python3/dist-packages/sarsen/geocoding.py:46: RuntimeWarning:
invalid value encountered in divide
67s t_prev, t_curr = t_curr, t_curr - np.where(q != 0, p / q, 0) # type:
ignore
67s
67s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
67s =========================== short test summary info
============================
67s FAILED
../build.0ip/src/tests/test_10_scene.py::test_compute_dem_oriented_area
67s FAILED
../build.0ip/src/tests/test_30_radiometry.py::test_compute_gamma_area
67s ====== 2 failed, 14 passed, 12 skipped, 2 deselected, 2 warnings in 2.85s
======
67s autopkgtest [23:46:23]: test python3: -----------------------]
67s autopkgtest [23:46:23]: test python3: - - - - - - - - - - results - - - -
- - - - - -
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--- Begin Message ---
Hi,
On Fri, 1 Sep 2023 12:50:05 +0200 Antonio Valentino
<antonio.valent...@tiscali.it> wrote:
I think that this is a regression in xarray v2023.08.0.
I have tested sarsen with the latest development version of xarray from
git main, and it works correctly.
Seems like the lasted version in unstable indeed works as it should in
this respect.
Paul
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--- End Message ---
