Your message dated Fri, 03 Nov 2023 18:05:45 +0000
with message-id <e1qyyyd-00e71g...@fasolo.debian.org>
and subject line Bug#1054675: fixed in genomicsdb 1.5.0-2
has caused the Debian Bug report #1054675,
regarding genomicsdb: FTBFS: catch.h:50:10: fatal error: catch2/catch.hpp: No
such file or directory
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
1054675: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1054675
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: genomicsdb
Version: 1.5.0-1
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20231027 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/genomicsdb-tiledb/test &&
> /usr/bin/c++ -DCATCH2_MAJOR_VERSION=2 -DENABLE_ZSTD -DHAVE_OPENMP
> -DTILEDB_TEST_DIR=\"/<<PKGBUILDDIR>>/genomicsdb-tiledb/test\"
> -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/genomicsdb-htslib
> -I/usr/include/muparserx
> -I/<<PKGBUILDDIR>>/genomicsdb-tiledb/test/include/benchmark
> -I/<<PKGBUILDDIR>>/genomicsdb-tiledb/test/include/c_api
> -I/<<PKGBUILDDIR>>/genomicsdb-tiledb/test/include/catch2
> -I/<<PKGBUILDDIR>>/genomicsdb-tiledb/test/../core/include/array
> -I/<<PKGBUILDDIR>>/genomicsdb-tiledb/test/../core/include/c_api
> -I/<<PKGBUILDDIR>>/genomicsdb-tiledb/test/../core/include/codec
> -I/<<PKGBUILDDIR>>/genomicsdb-tiledb/test/../core/include/expressions
> -I/<<PKGBUILDDIR>>/genomicsdb-tiledb/test/../core/include/fragment
> -I/<<PKGBUILDDIR>>/genomicsdb-tiledb/test/../core/include/metadata
> -I/<<PKGBUILDDIR>>/genomicsdb-tiledb/test/../core/include/misc
> -I/<<PKGBUILDDIR>>/genomicsdb-tiledb/test/../core/include/storage_manager -g
> -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2
> -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT
> genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o
> -MF CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o.d -o
> CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -c
> /<<PKGBUILDDIR>>/genomicsdb-tiledb/test/src/array/test_array_schema.cc
> In file included from
> /<<PKGBUILDDIR>>/genomicsdb-tiledb/test/src/array/test_array_schema.cc:38:
> /<<PKGBUILDDIR>>/genomicsdb-tiledb/test/include/catch2/catch.h:50:10: fatal
> error: catch2/catch.hpp: No such file or directory
> 50 | #include <catch2/catch.hpp>
> | ^~~~~~~~~~~~~~~~~~
> compilation terminated.
> make[4]: ***
> [genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make:79:
> genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o]
> Error 1
The full build log is available from:
http://qa-logs.debian.net/2023/10/27/genomicsdb_1.5.0-1_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20231027;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20231027&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: genomicsdb
Source-Version: 1.5.0-2
Done: Pierre Gruet <p...@debian.org>
We believe that the bug you reported is fixed in the latest version of
genomicsdb, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1054...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Pierre Gruet <p...@debian.org> (supplier of updated genomicsdb package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 03 Nov 2023 17:16:04 +0100
Source: genomicsdb
Architecture: source
Version: 1.5.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Pierre Gruet <p...@debian.org>
Closes: 1054675
Changes:
genomicsdb (1.5.0-2) unstable; urgency=medium
.
* Allowing the package to build against catch2 3.x (Closes: #1054675)
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--- End Message ---
