Your message dated Sun, 12 Nov 2023 19:50:37 +0000
with message-id <e1r2gtd-007bej...@fasolo.debian.org>
and subject line Bug#1054790: fixed in rdkit 202309.2-1
has caused the Debian Bug report #1054790,
regarding rdkit: FTBFS: make[1]: *** [debian/rules:88:
override_dh_auto_configure] Error 2
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1054790: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1054790
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: rdkit
Version: 202303.3-3
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20231027 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_configure -- -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON
> -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF
> -DRDK_BUILD_THREADSAFE_SSS=ON -DRDK_BUILD_PYTHON_WRAPPERS=ON
> -DRDK_OPTIMIZE_POPCNT=OFF -DRDK_USE_URF=OFF -DRDK_INSTALL_COMIC_FONTS=OFF
> -DRDK_BUILD_CAIRO_SUPPORT=ON -DBoost_NO_BOOST_CMAKE=TRUE
> -DCMAKE_INSTALL_PREFIX=/usr -DCATCH_DIR=/usr/include/catch2
> -DPYTHON_EXECUTABLE=/usr/bin/python3.11 ../
> cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake
> -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None
> -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var
> -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF
> -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON
> -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
> -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles"
> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu
> -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON -DRDK_INSTALL_INTREE=OFF
> -DRDK_INSTALL_STATIC_LIBS=OFF -DRDK_BUILD_THREADSAFE_SSS=ON
> -DRDK_BUILD_PYTHON_WRAPPERS=ON -DRDK_OPTIMIZE_POPCNT=OFF -DRDK_USE_URF=OFF
> -DRDK_INSTALL_COMIC_FONTS=OFF -DRDK_BUILD_CAIRO_SUPPORT=ON
> -DBoost_NO_BOOST_CMAKE=TRUE -DCMAKE_INSTALL_PREFIX=/usr
> -DCATCH_DIR=/usr/include/catch2 -DPYTHON_EXECUTABLE=/usr/bin/python3.11 ../ ..
> -- The C compiler identification is GNU 13.2.0
> -- The CXX compiler identification is GNU 13.2.0
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Check for working C compiler: /usr/bin/cc - skipped
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Check for working CXX compiler: /usr/bin/c++ - skipped
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Catch not found in /usr/include/catch2
> Downloading https://github.com/catchorg/Catch2/archive/v2.13.8.tar.gz...
> CMake Error at External/catch/CMakeLists.txt:22 (file):
> file RENAME failed to rename
>
> /<<PKGBUILDDIR>>/External/catch/Catch2-2.13.8
>
> to
>
> /usr/include/catch2
>
> because: Invalid cross-device link
>
>
>
> CATCH: /usr/include/catch2/single_include/catch2
> CMake Warning (dev) at CMakeLists.txt:276 (find_package):
> Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
> are removed. Run "cmake --help-policy CMP0148" for policy details. Use
> the cmake_policy command to set the policy and suppress this warning.
>
> This warning is for project developers. Use -Wno-dev to suppress it.
>
> -- Found PythonInterp: /usr/bin/python3.11 (found version "3.11.6")
> CMake Warning (dev) at CMakeLists.txt:285 (find_package):
> Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
> are removed. Run "cmake --help-policy CMP0148" for policy details. Use
> the cmake_policy command to set the policy and suppress this warning.
>
> This warning is for project developers. Use -Wno-dev to suppress it.
>
> -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.11.so (found
> version "3.11.6")
> CMake Warning (dev) at Code/cmake/Modules/FindNumPy.cmake:10 (find_package):
> Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
> are removed. Run "cmake --help-policy CMP0148" for policy details. Use
> the cmake_policy command to set the policy and suppress this warning.
>
> Call Stack (most recent call first):
> CMakeLists.txt:300 (find_package)
> This warning is for project developers. Use -Wno-dev to suppress it.
>
> CMake Warning at /usr/share/cmake-3.27/Modules/FindBoost.cmake:2233 (message):
> No header defined for python-py311; skipping header check (note:
> header-only libraries have no designated component)
> Call Stack (most recent call first):
> CMakeLists.txt:314 (find_package)
>
>
> Python Install directory /usr/lib/python3.11/site-packages
> PYTHON Py_ENABLE_SHARED: 1
> PYTHON USING LINK LINE: -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv
> -O2
> nbval not found, disabling the jupyter tests
> -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0")
> -- Performing Test CMAKE_HAVE_LIBC_PTHREAD
> -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
> -- Found Threads: TRUE
> -- Found Boost: /usr/include (found suitable version "1.74.0", minimum
> required is "1.58.0") found components: system serialization iostreams regex
> == Using strict rotor definition
> -- Found Boost: /usr/include (found suitable version "1.74.0", minimum
> required is "1.58.0") found components: system iostreams regex
> -- maeparser include dir set as '/usr/include'
> -- maeparser libraries set as '/usr/lib/x86_64-linux-gnu/libmaeparser.so'
> -- Found maeparser: /usr/include
> -- coordgen include dir set as /usr/include
> -- coordgen libraries set as '/usr/lib/x86_64-linux-gnu/libcoordgen.so'
> -- Found coordgen: /usr/include
> -- Found Boost: /usr/include (found suitable version "1.74.0", minimum
> required is "1.58.0") found components: iostreams regex
> -- Found Boost: /usr/include (found suitable version "1.74.0", minimum
> required is "1.58.0") found components: system iostreams regex
> -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.13")
> CMake Warning (dev) at Code/GraphMol/FilterCatalog/CMakeLists.txt:8
> (find_package):
> Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
> are removed. Run "cmake --help-policy CMP0148" for policy details. Use
> the cmake_policy command to set the policy and suppress this warning.
>
> This warning is for project developers. Use -Wno-dev to suppress it.
>
> -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1")
> -- Found Cairo: /usr/include/cairo
> -- Found Freetype: /usr/lib/x86_64-linux-gnu/libfreetype.so (found version
> "2.13.2")
> -- Could NOT find Boost (missing: program_options) (found suitable version
> "1.74.0", minimum required is "1.58.0")
> -- Configuring incomplete, errors occurred!
> cd obj-x86_64-linux-gnu && tail -v -n \+0 CMakeCache.txt
> ==> CMakeCache.txt <==
> # This is the CMakeCache file.
> # For build in directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
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> # KEY is the name of a variable in the cache.
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>
> ########################
> # EXTERNAL cache entries
> ########################
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> Abbreviations_LIB_DEPENDS:STATIC=general;SmilesParse;general;SubstructMatch;general;GraphMol;general;RDGeneral;
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>
> //Build the testing tree.
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>
> //Path to a file.
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>
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>
> //Boost library directory DEBUG
> Boost_LIBRARY_DIR_DEBUG:PATH=/usr/lib/x86_64-linux-gnu
>
> //Boost library directory RELEASE
> Boost_LIBRARY_DIR_RELEASE:PATH=/usr/lib/x86_64-linux-gnu
>
> //No help, variable specified on the command line.
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>
> //Boost program_options library (debug)
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> //Boost program_options library (release)
> Boost_PROGRAM_OPTIONS_LIBRARY_RELEASE:FILEPATH=Boost_PROGRAM_OPTIONS_LIBRARY_RELEASE-NOTFOUND
>
> //Boost python-py311 library (debug)
> Boost_PYTHON-PY311_LIBRARY_DEBUG:FILEPATH=Boost_PYTHON-PY311_LIBRARY_DEBUG-NOTFOUND
>
> //Boost python-py311 library (release)
> Boost_PYTHON-PY311_LIBRARY_RELEASE:FILEPATH=Boost_PYTHON-PY311_LIBRARY_RELEASE-NOTFOUND
>
> //Boost python311 library (debug)
> Boost_PYTHON311_LIBRARY_DEBUG:FILEPATH=/usr/lib/x86_64-linux-gnu/libboost_python311.so
>
> //Boost python311 library (release)
> Boost_PYTHON311_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libboost_python311.so
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> //Boost python3 library (debug)
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>
> //Boost regex library (debug)
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>
> //Boost regex library (release)
> Boost_REGEX_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libboost_regex.so
>
> //Boost serialization library (debug)
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> Boost_SERIALIZATION_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libboost_serialization.so
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> Boost_SYSTEM_LIBRARY_DEBUG:FILEPATH=/usr/lib/x86_64-linux-gnu/libboost_system.so
>
> //Boost system library (release)
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>
> //Path to a file.
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>
> //Path to a library.
> CAIRO_LIBRARIES:FILEPATH=/usr/lib/x86_64-linux-gnu/libcairo.so
>
> //No help, variable specified on the command line.
> CATCH_DIR:UNINITIALIZED=/usr/include/catch2
>
> //Dependencies for the target
> CIPLabeler_LIB_DEPENDS:STATIC=general;GraphMol;
>
> //Path to a program.
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>
> //Path to a program.
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> //Choose the type of build, options are: None Debug Release RelWithDebInfo
> // MinSizeRel ...
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> //Enable/Disable color output during build.
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> //A wrapper around 'ar' adding the appropriate '--plugin' option
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> -fstack-protector-strong -fstack-clash-protection -Wformat
> -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
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>
> //Flags used by the CXX compiler during RELEASE builds.
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> //Flags used by the CXX compiler during RELWITHDEBINFO builds.
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> //C compiler
> CMAKE_C_COMPILER:FILEPATH=/usr/bin/cc
>
> //A wrapper around 'ar' adding the appropriate '--plugin' option
> // for the GCC compiler
> CMAKE_C_COMPILER_AR:FILEPATH=/usr/bin/gcc-ar-13
>
> //A wrapper around 'ranlib' adding the appropriate '--plugin' option
> // for the GCC compiler
> CMAKE_C_COMPILER_RANLIB:FILEPATH=/usr/bin/gcc-ranlib-13
>
> //Flags used by the C compiler during all build types.
> CMAKE_C_FLAGS:STRING=-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -fstack-clash-protection -Wformat
> -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
> -Wdate-time -D_FORTIFY_SOURCE=2
>
> //Flags used by the C compiler during DEBUG builds.
> CMAKE_C_FLAGS_DEBUG:STRING=-g
>
> //Flags used by the C compiler during MINSIZEREL builds.
> CMAKE_C_FLAGS_MINSIZEREL:STRING=-Os -DNDEBUG
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> //Flags used by the C compiler during NONE builds.
> CMAKE_C_FLAGS_NONE:STRING=
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> //Flags used by the C compiler during RELEASE builds.
> CMAKE_C_FLAGS_RELEASE:STRING=-O3 -DNDEBUG
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> //Path to a program.
> CMAKE_DLLTOOL:FILEPATH=CMAKE_DLLTOOL-NOTFOUND
>
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> //Flags used by the linker during NONE builds.
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> CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON
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> //Value Computed by CMake.
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> //No help, variable specified on the command line.
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> //No help, variable specified on the command line.
> CMAKE_INSTALL_SYSCONFDIR:UNINITIALIZED=/etc
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> //Path to a program.
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> //Path to a program.
> CMAKE_MAKE_PROGRAM:FILEPATH=/usr/bin/gmake
>
> //Flags used by the linker during the creation of modules during
> // all build types.
> CMAKE_MODULE_LINKER_FLAGS:STRING=-Wl,-z,relro -Wl,-z,now
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> //Flags used by the linker during the creation of modules during
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>
> //Dependencies for the target
> Deprotect_LIB_DEPENDS:STATIC=general;ChemReactions;general;FilterCatalog;general;Descriptors;general;Fingerprints;general;DataStructs;general;Depictor;general;FileParsers;general;SubstructMatch;general;ChemTransforms;general;GraphMol;general;/usr/lib/x86_64-linux-gnu/libboost_serialization.so;
>
> //Dependencies for the target
> Descriptors_LIB_DEPENDS:STATIC=general;PartialCharges;general;SmilesParse;general;FileParsers;general;Subgraphs;general;SubstructMatch;general;MolTransforms;general;GraphMol;general;EigenSolvers;general;RDGeneral;
>
> //Dependencies for the target
> DistGeomHelpers_LIB_DEPENDS:STATIC=general;ForceFieldHelpers;general;SubstructMatch;general;GraphMol;general;DistGeometry;general;Alignment;
>
> //Dependencies for the target
> DistGeom_LIB_DEPENDS:STATIC=general;DistGeometry;general;RDBoost;
>
> //Dependencies for the target
> DistGeometry_LIB_DEPENDS:STATIC=general;EigenSolvers;general;ForceField;general;ForceFieldHelpers;
>
> //Path to a file.
> EIGEN3_INCLUDE_DIR:PATH=/usr/include/eigen3
>
> //The directory containing a CMake configuration file for Eigen3.
> Eigen3_DIR:PATH=Eigen3_DIR-NOTFOUND
>
> //Dependencies for the target
> EigenSolvers_LIB_DEPENDS:STATIC=general;RDGeneral;
>
> //No help, variable specified on the command line.
> FETCHCONTENT_FULLY_DISCONNECTED:UNINITIALIZED=ON
>
> //Dependencies for the target
> FMCS_LIB_DEPENDS:STATIC=general;Depictor;general;SmilesParse;general;FileParsers;general;ChemTransforms;general;SubstructMatch;general;GraphMol;
>
> //Path to a file.
> FREETYPE_INCLUDE_DIR_freetype2:PATH=/usr/include/freetype2
>
> //Path to a file.
> FREETYPE_INCLUDE_DIR_ft2build:PATH=/usr/include/freetype2
>
> //Path to a library.
> FREETYPE_LIBRARY_DEBUG:FILEPATH=FREETYPE_LIBRARY_DEBUG-NOTFOUND
>
> //Path to a library.
> FREETYPE_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libfreetype.so
>
> //Dependencies for the target
> FileParsers_LIB_DEPENDS:STATIC=general;GenericGroups;general;Depictor;general;SmilesParse;general;ChemTransforms;general;GraphMol;general;/usr/lib/x86_64-linux-gnu/libmaeparser.so;general;/usr/lib/x86_64-linux-gnu/libboost_system.so;general;/usr/lib/x86_64-linux-gnu/libboost_iostreams.so;general;/usr/lib/x86_64-linux-gnu/libboost_regex.so;general;/usr/lib/x86_64-linux-gnu/libboost_system.so;general;/usr/lib/x86_64-linux-gnu/libboost_iostreams.so;general;/usr/lib/x86_64-linux-gnu/libboost_regex.so;general;/usr/lib/x86_64-linux-gnu/libz.so;
>
> //Dependencies for the target
> FilterCatalog_LIB_DEPENDS:STATIC=general;Subgraphs;general;SubstructMatch;general;SmilesParse;general;GraphMol;general;Catalogs;general;/usr/lib/x86_64-linux-gnu/libboost_serialization.so;
>
> //Dependencies for the target
> Fingerprints_LIB_DEPENDS:STATIC=general;DataStructs;general;Subgraphs;general;SubstructMatch;general;SmilesParse;general;GraphMol;general;RDGeneral;
>
> //Dependencies for the target
> ForceFieldHelpers_LIB_DEPENDS:STATIC=general;SmilesParse;general;SubstructMatch;general;ForceField;
>
> //Dependencies for the target
> ForceField_LIB_DEPENDS:STATIC=general;Optimizer;general;Trajectory;
>
> //Dependencies for the target
> FragCatalog_LIB_DEPENDS:STATIC=general;Subgraphs;general;SubstructMatch;general;SmilesParse;general;Catalogs;general;GraphMol;general;RDGeneral;
>
> //Dependencies for the target
> GenericGroups_LIB_DEPENDS:STATIC=general;GraphMol;general;RDGeneral;
>
> //Dependencies for the target
> GraphMol_LIB_DEPENDS:STATIC=general;RDGeometryLib;general;RDGeneral;general;/usr/lib/x86_64-linux-gnu/libboost_serialization.so;
>
> //Dependencies for the target
> InfoTheory_LIB_DEPENDS:STATIC=general;DataStructs;general;RDGeneral;
>
> //Command to build the project
> MAKECOMMAND:STRING=/usr/bin/cmake --build . --config
> "${CTEST_CONFIGURATION_TYPE}"
>
> //Path to the memory checking command, used for memory error detection.
> MEMORYCHECK_COMMAND:FILEPATH=MEMORYCHECK_COMMAND-NOTFOUND
>
> //File that contains suppressions for the memory checker
> MEMORYCHECK_SUPPRESSIONS_FILE:FILEPATH=
>
> //Dependencies for the target
> MMPA_LIB_DEPENDS:STATIC=general;SubstructMatch;general;Depictor;general;FileParsers;general;ChemTransforms;general;GraphMol;general;RDGeneral;
>
> //Dependencies for the target
> MolAlign_LIB_DEPENDS:STATIC=general;MolTransforms;general;SmilesParse;general;SubstructMatch;general;Alignment;general;GraphMol;general;RDGeneral;
>
> //Dependencies for the target
> MolCatalog_LIB_DEPENDS:STATIC=general;GraphMol;general;Catalogs;
>
> //Dependencies for the target
> MolChemicalFeatures_LIB_DEPENDS:STATIC=general;SubstructMatch;general;SmilesParse;general;GraphMol;
>
> //Dependencies for the target
> MolDraw2D_LIB_DEPENDS:STATIC=general;ChemReactions;general;Depictor;general;MolTransforms;general;SubstructMatch;general;Subgraphs;general;GraphMol;general;EigenSolvers;general;/usr/lib/x86_64-linux-gnu/libfreetype.so;
>
> //Dependencies for the target
> MolEnumerator_LIB_DEPENDS:STATIC=general;FileParsers;general;ChemReactions;general;ChemTransforms;general;SubstructMatch;general;GraphMol;general;RDGeneral;
>
> //Dependencies for the target
> MolHash_LIB_DEPENDS:STATIC=general;Depictor;general;Descriptors;general;GraphMol;
>
> //Dependencies for the target
> MolInterchange_LIB_DEPENDS:STATIC=general;GraphMol;
>
> //Dependencies for the target
> MolStandardize_LIB_DEPENDS:STATIC=general;ChemReactions;general;ChemTransforms;general;SmilesParse;general;SubstructMatch;general;Descriptors;general;GraphMol;
>
> //Dependencies for the target
> MolTransforms_LIB_DEPENDS:STATIC=general;GraphMol;general;EigenSolvers;general;RDGeneral;
>
> //Dependencies for the target
> O3AAlign_LIB_DEPENDS:STATIC=general;MolAlign;general;MolTransforms;general;SubstructMatch;general;Alignment;general;GraphMol;general;RDGeneral;general;ForceFieldHelpers;
>
> //Dependencies for the target
> Optimizer_LIB_DEPENDS:STATIC=general;RDGeometryLib;general;Trajectory;general;RDGeneral;
>
> //Arguments to supply to pkg-config
> PKG_CONFIG_ARGN:STRING=
>
> //pkg-config executable
> PKG_CONFIG_EXECUTABLE:FILEPATH=/usr/bin/pkg-config
>
> //Add module Clustering
> PYTHON_ENABLE_MODULE_Clustering:BOOL=ON
>
> //Add module DistGeom
> PYTHON_ENABLE_MODULE_DistGeom:BOOL=ON
>
> //Add module cDataStructs
> PYTHON_ENABLE_MODULE_cDataStructs:BOOL=ON
>
> //Add module cQuantize
> PYTHON_ENABLE_MODULE_cQuantize:BOOL=ON
>
> //Add module rdAbbreviations
> PYTHON_ENABLE_MODULE_rdAbbreviations:BOOL=ON
>
> //Add module rdAlignment
> PYTHON_ENABLE_MODULE_rdAlignment:BOOL=ON
>
> //Add module rdBase
> PYTHON_ENABLE_MODULE_rdBase:BOOL=ON
>
> //Add module rdCIPLabeler
> PYTHON_ENABLE_MODULE_rdCIPLabeler:BOOL=ON
>
> //Add module rdChemReactions
> PYTHON_ENABLE_MODULE_rdChemReactions:BOOL=ON
>
> //Add module rdChemicalFeatures
> PYTHON_ENABLE_MODULE_rdChemicalFeatures:BOOL=ON
>
> //Add module rdCoordGen
> PYTHON_ENABLE_MODULE_rdCoordGen:BOOL=ON
>
> //Add module rdDepictor
> PYTHON_ENABLE_MODULE_rdDepictor:BOOL=ON
>
> //Add module rdDeprotect
> PYTHON_ENABLE_MODULE_rdDeprotect:BOOL=ON
>
> //Add module rdDistGeom
> PYTHON_ENABLE_MODULE_rdDistGeom:BOOL=ON
>
> //Add module rdFMCS
> PYTHON_ENABLE_MODULE_rdFMCS:BOOL=ON
>
> //Add module rdFingerprintGenerator
> PYTHON_ENABLE_MODULE_rdFingerprintGenerator:BOOL=ON
>
> //Add module rdForceField
> PYTHON_ENABLE_MODULE_rdForceField:BOOL=ON
>
> //Add module rdForceFieldHelpers
> PYTHON_ENABLE_MODULE_rdForceFieldHelpers:BOOL=ON
>
> //Add module rdGeometry
> PYTHON_ENABLE_MODULE_rdGeometry:BOOL=ON
>
> //Add module rdInfoTheory
> PYTHON_ENABLE_MODULE_rdInfoTheory:BOOL=ON
>
> //Add module rdMHFPFingerprint
> PYTHON_ENABLE_MODULE_rdMHFPFingerprint:BOOL=ON
>
> //Add module rdMMPA
> PYTHON_ENABLE_MODULE_rdMMPA:BOOL=ON
>
> //Add module rdMetricMatrixCalc
> PYTHON_ENABLE_MODULE_rdMetricMatrixCalc:BOOL=ON
>
> //Add module rdMolAlign
> PYTHON_ENABLE_MODULE_rdMolAlign:BOOL=ON
>
> //Add module rdMolCatalog
> PYTHON_ENABLE_MODULE_rdMolCatalog:BOOL=ON
>
> //Add module rdMolChemicalFeatures
> PYTHON_ENABLE_MODULE_rdMolChemicalFeatures:BOOL=ON
>
> //Add module rdMolDescriptors
> PYTHON_ENABLE_MODULE_rdMolDescriptors:BOOL=ON
>
> //Add module rdMolDraw2D
> PYTHON_ENABLE_MODULE_rdMolDraw2D:BOOL=ON
>
> //Add module rdMolEnumerator
> PYTHON_ENABLE_MODULE_rdMolEnumerator:BOOL=ON
>
> //Add module rdMolHash
> PYTHON_ENABLE_MODULE_rdMolHash:BOOL=ON
>
> //Add module rdMolInterchange
> PYTHON_ENABLE_MODULE_rdMolInterchange:BOOL=ON
>
> //Add module rdMolStandardize
> PYTHON_ENABLE_MODULE_rdMolStandardize:BOOL=ON
>
> //Add module rdMolTransforms
> PYTHON_ENABLE_MODULE_rdMolTransforms:BOOL=ON
>
> //Add module rdPartialCharges
> PYTHON_ENABLE_MODULE_rdPartialCharges:BOOL=ON
>
> //Add module rdRGroupDecomposition
> PYTHON_ENABLE_MODULE_rdRGroupDecomposition:BOOL=ON
>
> //Add module rdReducedGraphs
> PYTHON_ENABLE_MODULE_rdReducedGraphs:BOOL=ON
>
> //Add module rdSLNParse
> PYTHON_ENABLE_MODULE_rdSLNParse:BOOL=ON
>
> //Add module rdScaffoldNetwork
> PYTHON_ENABLE_MODULE_rdScaffoldNetwork:BOOL=ON
>
> //Add module rdShapeHelpers
> PYTHON_ENABLE_MODULE_rdShapeHelpers:BOOL=ON
>
> //Add module rdSimDivPickers
> PYTHON_ENABLE_MODULE_rdSimDivPickers:BOOL=ON
>
> //Add module rdSubstructLibrary
> PYTHON_ENABLE_MODULE_rdSubstructLibrary:BOOL=ON
>
> //Add module rdTautomerQuery
> PYTHON_ENABLE_MODULE_rdTautomerQuery:BOOL=ON
>
> //Add module rdchem
> PYTHON_ENABLE_MODULE_rdchem:BOOL=ON
>
> //Add module rdfiltercatalog
> PYTHON_ENABLE_MODULE_rdfiltercatalog:BOOL=ON
>
> //Add module rdfragcatalog
> PYTHON_ENABLE_MODULE_rdfragcatalog:BOOL=ON
>
> //Add module rdmolfiles
> PYTHON_ENABLE_MODULE_rdmolfiles:BOOL=ON
>
> //Add module rdmolops
> PYTHON_ENABLE_MODULE_rdmolops:BOOL=ON
>
> //Add module rdqueries
> PYTHON_ENABLE_MODULE_rdqueries:BOOL=ON
>
> //Add module rdtrajectory
> PYTHON_ENABLE_MODULE_rdtrajectory:BOOL=ON
>
> //Path to a program.
> PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.11
>
> //Path to a file.
> PYTHON_INCLUDE_DIR:PATH=/usr/include/python3.11
>
> //Path to a library.
> PYTHON_LIBRARY:FILEPATH=/usr/lib/x86_64-linux-gnu/libpython3.11.so
>
> //Path to a library.
> PYTHON_LIBRARY_DEBUG:FILEPATH=PYTHON_LIBRARY_DEBUG-NOTFOUND
>
> //Add module Clustering shared
> PYTHON_MODULE_Clustering_BUILD_SHARED:BOOL=ON
>
> //Add module DistGeom shared
> PYTHON_MODULE_DistGeom_BUILD_SHARED:BOOL=ON
>
> //Add module cDataStructs shared
> PYTHON_MODULE_cDataStructs_BUILD_SHARED:BOOL=ON
>
> //Add module cQuantize shared
> PYTHON_MODULE_cQuantize_BUILD_SHARED:BOOL=ON
>
> //Add module rdAbbreviations shared
> PYTHON_MODULE_rdAbbreviations_BUILD_SHARED:BOOL=ON
>
> //Add module rdAlignment shared
> PYTHON_MODULE_rdAlignment_BUILD_SHARED:BOOL=ON
>
> //Add module rdBase shared
> PYTHON_MODULE_rdBase_BUILD_SHARED:BOOL=ON
>
> //Add module rdCIPLabeler shared
> PYTHON_MODULE_rdCIPLabeler_BUILD_SHARED:BOOL=ON
>
> //Add module rdChemReactions shared
> PYTHON_MODULE_rdChemReactions_BUILD_SHARED:BOOL=ON
>
> //Add module rdChemicalFeatures shared
> PYTHON_MODULE_rdChemicalFeatures_BUILD_SHARED:BOOL=ON
>
> //Add module rdCoordGen shared
> PYTHON_MODULE_rdCoordGen_BUILD_SHARED:BOOL=ON
>
> //Add module rdDepictor shared
> PYTHON_MODULE_rdDepictor_BUILD_SHARED:BOOL=ON
>
> //Add module rdDeprotect shared
> PYTHON_MODULE_rdDeprotect_BUILD_SHARED:BOOL=ON
>
> //Add module rdDistGeom shared
> PYTHON_MODULE_rdDistGeom_BUILD_SHARED:BOOL=ON
>
> //Add module rdFMCS shared
> PYTHON_MODULE_rdFMCS_BUILD_SHARED:BOOL=ON
>
> //Add module rdFingerprintGenerator shared
> PYTHON_MODULE_rdFingerprintGenerator_BUILD_SHARED:BOOL=ON
>
> //Add module rdForceFieldHelpers shared
> PYTHON_MODULE_rdForceFieldHelpers_BUILD_SHARED:BOOL=ON
>
> //Add module rdForceField shared
> PYTHON_MODULE_rdForceField_BUILD_SHARED:BOOL=ON
>
> //Add module rdGeometry shared
> PYTHON_MODULE_rdGeometry_BUILD_SHARED:BOOL=ON
>
> //Add module rdInfoTheory shared
> PYTHON_MODULE_rdInfoTheory_BUILD_SHARED:BOOL=ON
>
> //Add module rdMHFPFingerprint shared
> PYTHON_MODULE_rdMHFPFingerprint_BUILD_SHARED:BOOL=ON
>
> //Add module rdMMPA shared
> PYTHON_MODULE_rdMMPA_BUILD_SHARED:BOOL=ON
>
> //Add module rdMetricMatrixCalc shared
> PYTHON_MODULE_rdMetricMatrixCalc_BUILD_SHARED:BOOL=ON
>
> //Add module rdMolAlign shared
> PYTHON_MODULE_rdMolAlign_BUILD_SHARED:BOOL=ON
>
> //Add module rdMolCatalog shared
> PYTHON_MODULE_rdMolCatalog_BUILD_SHARED:BOOL=ON
>
> //Add module rdMolChemicalFeatures shared
> PYTHON_MODULE_rdMolChemicalFeatures_BUILD_SHARED:BOOL=ON
>
> //Add module rdMolDescriptors shared
> PYTHON_MODULE_rdMolDescriptors_BUILD_SHARED:BOOL=ON
>
> //Add module rdMolDraw2D shared
> PYTHON_MODULE_rdMolDraw2D_BUILD_SHARED:BOOL=ON
>
> //Add module rdMolEnumerator shared
> PYTHON_MODULE_rdMolEnumerator_BUILD_SHARED:BOOL=ON
>
> //Add module rdMolHash shared
> PYTHON_MODULE_rdMolHash_BUILD_SHARED:BOOL=ON
>
> //Add module rdMolInterchange shared
> PYTHON_MODULE_rdMolInterchange_BUILD_SHARED:BOOL=ON
>
> //Add module rdMolStandardize shared
> PYTHON_MODULE_rdMolStandardize_BUILD_SHARED:BOOL=ON
>
> //Add module rdMolTransforms shared
> PYTHON_MODULE_rdMolTransforms_BUILD_SHARED:BOOL=ON
>
> //Add module rdPartialCharges shared
> PYTHON_MODULE_rdPartialCharges_BUILD_SHARED:BOOL=ON
>
> //Add module rdRGroupDecomposition shared
> PYTHON_MODULE_rdRGroupDecomposition_BUILD_SHARED:BOOL=ON
>
> //Add module rdReducedGraphs shared
> PYTHON_MODULE_rdReducedGraphs_BUILD_SHARED:BOOL=ON
>
> //Add module rdSLNParse shared
> PYTHON_MODULE_rdSLNParse_BUILD_SHARED:BOOL=ON
>
> //Add module rdScaffoldNetwork shared
> PYTHON_MODULE_rdScaffoldNetwork_BUILD_SHARED:BOOL=ON
>
> //Add module rdShapeHelpers shared
> PYTHON_MODULE_rdShapeHelpers_BUILD_SHARED:BOOL=ON
>
> //Add module rdSimDivPickers shared
> PYTHON_MODULE_rdSimDivPickers_BUILD_SHARED:BOOL=ON
>
> //Add module rdSubstructLibrary shared
> PYTHON_MODULE_rdSubstructLibrary_BUILD_SHARED:BOOL=ON
>
> //Add module rdTautomerQuery shared
> PYTHON_MODULE_rdTautomerQuery_BUILD_SHARED:BOOL=ON
>
> //Add module rdchem shared
> PYTHON_MODULE_rdchem_BUILD_SHARED:BOOL=ON
>
> //Add module rdfiltercatalog shared
> PYTHON_MODULE_rdfiltercatalog_BUILD_SHARED:BOOL=ON
>
> //Add module rdfragcatalog shared
> PYTHON_MODULE_rdfragcatalog_BUILD_SHARED:BOOL=ON
>
> //Add module rdmolfiles shared
> PYTHON_MODULE_rdmolfiles_BUILD_SHARED:BOOL=ON
>
> //Add module rdmolops shared
> PYTHON_MODULE_rdmolops_BUILD_SHARED:BOOL=ON
>
> //Add module rdqueries shared
> PYTHON_MODULE_rdqueries_BUILD_SHARED:BOOL=ON
>
> //Add module rdtrajectory shared
> PYTHON_MODULE_rdtrajectory_BUILD_SHARED:BOOL=ON
>
> //Directory where the arrayobject.h header file can be found. This
> // file is part of the numarray package
> PYTHON_NUMPY_INCLUDE_PATH:PATH=/usr/lib/python3/dist-packages/numpy/core/include
>
> //Dependencies for the target
> PartialCharges_LIB_DEPENDS:STATIC=general;GraphMol;general;RDGeneral;
>
> //Dependencies for the target
> RDBoost_LIB_DEPENDS:STATIC=general;RDGeneral;
>
> //Dependencies for the target
> RDGeneral_LIB_DEPENDS:STATIC=general;dl;
>
> //Dependencies for the target
> RDGeometryLib_LIB_DEPENDS:STATIC=general;DataStructs;general;RDGeneral;
>
> //Name of the boost python3 library. If installed as libboost_python-xxx.so,
> // use python-xxx.
> RDK_BOOST_PYTHON3_NAME:STRING=python3
>
> //install support for the avalon toolkit. Use the variable AVALONTOOLS_DIR
> // to set the location of the source.
> RDK_BUILD_AVALON_SUPPORT:BOOL=OFF
>
> //build support for Cairo drawing
> RDK_BUILD_CAIRO_SUPPORT:BOOL=ON
>
> //build the CFFI wrapper (for use in other programming languges)
> RDK_BUILD_CFFI_LIB:BOOL=OFF
>
> //build in support for compressed MolSuppliers
> RDK_BUILD_COMPRESSED_SUPPLIERS:BOOL=OFF
>
> //build the Contrib directory
> RDK_BUILD_CONTRIB:BOOL=OFF
>
> //build the rdkit coordgen wrapper
> RDK_BUILD_COORDGEN_SUPPORT:BOOL=ON
>
> //build the c++ tests (disabing can speed up builds
> RDK_BUILD_CPP_TESTS:BOOL=ON
>
> //Build the 3D descriptors calculators, requires Eigen3 to be installed
> RDK_BUILD_DESCRIPTORS3D:BOOL=ON
>
> //build the rdkit freesasa wrapper
> RDK_BUILD_FREESASA_SUPPORT:BOOL=OFF
>
> //build support for FreeType font handling
> RDK_BUILD_FREETYPE_SUPPORT:BOOL=ON
>
> //build the fuzz targets
> RDK_BUILD_FUZZ_TARGETS:BOOL=OFF
>
> //build the rdkit inchi wrapper
> RDK_BUILD_INCHI_SUPPORT:BOOL=OFF
>
> //build the rdkit MAE parser wrapper
> RDK_BUILD_MAEPARSER_SUPPORT:BOOL=ON
>
> //build the minimal RDKit wrapper (for the JS bindings)
> RDK_BUILD_MINIMAL_LIB:BOOL=OFF
>
> //build in support for CommonChem molecule interchange
> RDK_BUILD_MOLINTERCHANGE_SUPPORT:BOOL=ON
>
> //build the PostgreSQL cartridge
> RDK_BUILD_PGSQL:BOOL=OFF
>
> //build the standard python wrappers
> RDK_BUILD_PYTHON_WRAPPERS:BOOL=ON
>
> //build the QT drawing demo
> RDK_BUILD_QT_DEMO:BOOL=OFF
>
> //build support for QT drawing
> RDK_BUILD_QT_SUPPORT:BOOL=OFF
>
> //build shared libraries using rpath
> RDK_BUILD_RPATH_SUPPORT:BOOL=OFF
>
> //include support for the SLN format
> RDK_BUILD_SLN_SUPPORT:BOOL=ON
>
> //build in support for the StructChecker alpha (not recommended,
> // use the MolVS integration instead)
> RDK_BUILD_STRUCTCHECKER_SUPPORT:BOOL=OFF
>
> //build the experimental SWIG C# wrappers (does nothing if
> RDK_BUILD_SWIG_WRAPPERS
> // is not set)
> RDK_BUILD_SWIG_CSHARP_WRAPPER:BOOL=OFF
>
> //build the SWIG JAVA wrappers (does nothing if RDK_BUILD_SWIG_WRAPPERS
> // is not set)
> RDK_BUILD_SWIG_JAVA_WRAPPER:BOOL=ON
>
> //build the SWIG wrappers
> RDK_BUILD_SWIG_WRAPPERS:BOOL=OFF
>
> //Build the gzip'd stream test
> RDK_BUILD_TEST_GZIP:BOOL=OFF
>
> //enable thread-safe substructure searching
> RDK_BUILD_THREADSAFE_SSS:BOOL=ON
>
> //build in support for the RDKit's implementation of xyz2mol (in
> // the DetermineBonds library)
> RDK_BUILD_XYZ2MOL_SUPPORT:BOOL=OFF
>
> //build support for the YAeHMOP wrapper
> RDK_BUILD_YAEHMOP_SUPPORT:BOOL=OFF
>
> //the external libraries
> RDK_COORDGEN_LIBS:STRING=MolAlign;/usr/lib/x86_64-linux-gnu/libcoordgen.so;/usr/lib/x86_64-linux-gnu/libmaeparser.so;/usr/lib/x86_64-linux-gnu/libboost_system.so;/usr/lib/x86_64-linux-gnu/libboost_iostreams.so;/usr/lib/x86_64-linux-gnu/libboost_regex.so;/usr/lib/x86_64-linux-gnu/libboost_system.so;/usr/lib/x86_64-linux-gnu/libboost_iostreams.so;/usr/lib/x86_64-linux-gnu/libboost_regex.so
>
> //download and install comic-neue to maximize the "utility" of
> // the comic mode in MolDraw2D
> RDK_INSTALL_COMIC_FONTS:BOOL=OFF
>
> //install libraries and headers
> RDK_INSTALL_DEV_COMPONENT:BOOL=ON
>
> //install the rdkit DLLs when using MSVC
> RDK_INSTALL_DLLS_MSVC:BOOL=OFF
>
> //install the rdkit in the source tree (former behavior)
> RDK_INSTALL_INTREE:BOOL=OFF
>
> //install the rdkit Python tests with the wrappers
> RDK_INSTALL_PYTHON_TESTS:BOOL=OFF
>
> //install the rdkit static libraries
> RDK_INSTALL_STATIC_LIBS:BOOL=OFF
>
> //the external libraries
> RDK_MAEPARSER_LIBS:STRING=/usr/lib/x86_64-linux-gnu/libmaeparser.so;/usr/lib/x86_64-linux-gnu/libboost_system.so;/usr/lib/x86_64-linux-gnu/libboost_iostreams.so;/usr/lib/x86_64-linux-gnu/libboost_regex.so
>
> //build the minimal RDKit JS wrapper such that it supports legacy
> // browsers
> RDK_MINIMAL_LIB_SUPPORT_LEGACY_BROWSERS:BOOL=OFF
>
> //Use SSE4.2 popcount instruction while compiling.
> RDK_OPTIMIZE_POPCNT:BOOL=OFF
>
> //statically link rdkit libraries into the PostgreSQL cartridge
> RDK_PGSQL_STATIC:BOOL=ON
>
> //statically link rdkit libraries into the SWIG wrappers
> RDK_SWIG_STATIC:BOOL=ON
>
> //Use G(L)COV to compute test coverage
> RDK_TEST_COVERAGE:BOOL=OFF
>
> //run MMFF compliance tests (requires tar/gzip)
> RDK_TEST_MMFF_COMPLIANCE:BOOL=ON
>
> //run some tests of multithreading
> RDK_TEST_MULTITHREADED:BOOL=ON
>
> //use boost::iostreams
> RDK_USE_BOOST_IOSTREAMS:BOOL=ON
>
> //use boost::regex instead of std::regex (needed for systems with
> // g++-4.8)
> RDK_USE_BOOST_REGEX:BOOL=OFF
>
> //Use the boost serialization library if available
> RDK_USE_BOOST_SERIALIZATION:BOOL=ON
>
> //use boost::stacktrace to do more verbose invariant output (linux
> // only)
> RDK_USE_BOOST_STACKTRACE:BOOL=ON
>
> //use flex/bison, if available, to build the SMILES/SMARTS/SLN
> // parsers
> RDK_USE_FLEXBISON:BOOL=OFF
>
> //Use Qt6 instead of Qt5
> RDK_USE_QT6:BOOL=OFF
>
> //Use the most strict rotatable bond definition
> RDK_USE_STRICT_ROTOR_DEFINITION:BOOL=ON
>
> //Build support for Florian Flachsenberg's URF library
> RDK_USE_URF:BOOL=OFF
>
> //Value Computed by CMake
> RDKit_BINARY_DIR:STATIC=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
>
> //Value Computed by CMake
> RDKit_IS_TOP_LEVEL:STATIC=ON
>
> //Value Computed by CMake
> RDKit_SOURCE_DIR:STATIC=/<<PKGBUILDDIR>>
>
> //Dependencies for the target
> RDStreams_LIB_DEPENDS:STATIC=general;Boost::iostreams;
>
> //Dependencies for the target
> RGroupDecomposition_LIB_DEPENDS:STATIC=general;FMCS;general;ChemTransforms;general;SubstructMatch;general;SmilesParse;general;Fingerprints;general;GraphMol;general;RDGeneral;general;ga;
>
> //Dependencies for the target
> ReducedGraphs_LIB_DEPENDS:STATIC=general;SubstructMatch;general;SmilesParse;general;GraphMol;general;RDGeneral;
>
> //Name of the computer/site where compile is being run
> SITE:STRING=ip-10-84-234-47
>
> //Dependencies for the target
> SLNParse_LIB_DEPENDS:STATIC=general;GraphMol;general;RDGeneral;
>
> //Dependencies for the target
> ScaffoldNetwork_LIB_DEPENDS:STATIC=general;MolStandardize;general;ChemReactions;general;ChemTransforms;general;SmilesParse;general;SubstructMatch;general;GraphMol;general;RDGeneral;
>
> //Dependencies for the target
> ShapeHelpers_LIB_DEPENDS:STATIC=general;MolTransforms;general;GraphMol;general;RDGeneral;
>
> //Dependencies for the target
> SimDivPickers_LIB_DEPENDS:STATIC=general;hc;general;RDGeneral;
>
> //Dependencies for the target
> SmilesParse_LIB_DEPENDS:STATIC=general;GraphMol;general;RDGeneral;
>
> //Dependencies for the target
> Subgraphs_LIB_DEPENDS:STATIC=general;GraphMol;general;RDGeneral;
>
> //Dependencies for the target
> SubstructLibrary_LIB_DEPENDS:STATIC=general;TautomerQuery;general;MolStandardize;general;Fingerprints;general;SubstructMatch;general;SmilesParse;general;GraphMol;general;Catalogs;general;DataStructs;general;RDGeneral;general;/usr/lib/x86_64-linux-gnu/libboost_serialization.so;
>
> //Dependencies for the target
> SubstructMatch_LIB_DEPENDS:STATIC=general;GenericGroups;general;GraphMol;general;RDGeneral;
>
> //Dependencies for the target
> TautomerQuery_LIB_DEPENDS:STATIC=general;GraphMol;general;RDGeneral;general;MolStandardize;general;/usr/lib/x86_64-linux-gnu/libboost_serialization.so;
>
> //Dependencies for the target
> Trajectory_LIB_DEPENDS:STATIC=general;GraphMol;general;RDGeneral;
>
> //Path to a file.
> ZLIB_INCLUDE_DIR:PATH=/usr/include
>
> //Path to a library.
> ZLIB_LIBRARY_DEBUG:FILEPATH=ZLIB_LIBRARY_DEBUG-NOTFOUND
>
> //Path to a library.
> ZLIB_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-gnu/libz.so
>
> //Dependencies for the target
> cDataStructs_LIB_DEPENDS:STATIC=general;DataStructs;general;RDBoost;
>
> //Dependencies for the target
> cQuantize_LIB_DEPENDS:STATIC=general;InfoTheory;general;RDGeneral;general;RDBoost;
>
> //include path for coordgen
> coordgen_INCLUDE_DIRS:PATH=/usr/include
>
> //libraries for coordgen
> coordgen_LIBRARIES:FILEPATH=/usr/lib/x86_64-linux-gnu/libcoordgen.so
>
> //include path for maeparser
> maeparser_INCLUDE_DIRS:PATH=/usr/include
>
> //libraries for maeparser
> maeparser_LIBRARIES:FILEPATH=/usr/lib/x86_64-linux-gnu/libmaeparser.so
>
> //Path to a library.
> pkgcfg_lib_PC_CAIRO_cairo:FILEPATH=/usr/lib/x86_64-linux-gnu/libcairo.so
>
> //Dependencies for the target
> rdAbbreviations_LIB_DEPENDS:STATIC=general;Abbreviations;general;GraphMol;general;RDBoost;
>
> //Dependencies for the target
> rdAlignment_LIB_DEPENDS:STATIC=general;Alignment;general;RDBoost;
>
> //Dependencies for the target
> rdBase_LIB_DEPENDS:STATIC=general;RDGeneral;general;RDBoost;general;RDBoost;
>
> //Dependencies for the target
> rdCIPLabeler_LIB_DEPENDS:STATIC=general;GraphMol;general;CIPLabeler;general;RDBoost;general;RDBoost;
>
> //Dependencies for the target
> rdChemReactions_LIB_DEPENDS:STATIC=general;ChemReactions;general;RDBoost;
>
> //Dependencies for the target
> rdChemicalFeatures_LIB_DEPENDS:STATIC=general;ChemicalFeatures;general;GraphMol;general;RDBoost;
>
> //Dependencies for the target
> rdCoordGen_LIB_DEPENDS:STATIC=general;MolAlign;general;/usr/lib/x86_64-linux-gnu/libcoordgen.so;general;/usr/lib/x86_64-linux-gnu/libmaeparser.so;general;/usr/lib/x86_64-linux-gnu/libboost_system.so;general;/usr/lib/x86_64-linux-gnu/libboost_iostreams.so;general;/usr/lib/x86_64-linux-gnu/libboost_regex.so;general;/usr/lib/x86_64-linux-gnu/libboost_system.so;general;/usr/lib/x86_64-linux-gnu/libboost_iostreams.so;general;/usr/lib/x86_64-linux-gnu/libboost_regex.so;general;MolAlign;general;SubstructMatch;general;GraphMol;general;DataStructs;general;RDGeometryLib;general;RDGeneral;general;RDBoost;general;RDBoost;
>
> //Dependencies for the target
> rdDepictor_LIB_DEPENDS:STATIC=general;Depictor;general;RDBoost;
>
> //Dependencies for the target
> rdDeprotect_LIB_DEPENDS:STATIC=general;Deprotect;general;RDBoost;
>
> //Dependencies for the target
> rdDistGeom_LIB_DEPENDS:STATIC=general;DistGeomHelpers;general;FileParsers;general;MolTransforms;general;SmilesParse;general;SubstructMatch;general;MolAlign;general;EigenSolvers;general;RDBoost;
>
> //Dependencies for the target
> rdFMCS_LIB_DEPENDS:STATIC=general;FMCS;general;RDBoost;
>
> //Dependencies for the target
> rdFingerprintGenerator_LIB_DEPENDS:STATIC=general;Fingerprints;general;RDBoost;
>
> //Dependencies for the target
> rdForceFieldHelpers_LIB_DEPENDS:STATIC=general;ForceFieldHelpers;general;RDBoost;
>
> //Dependencies for the target
> rdForceField_LIB_DEPENDS:STATIC=general;ForceFieldHelpers;general;RDBoost;
>
> //Dependencies for the target
> rdGeometry_LIB_DEPENDS:STATIC=general;RDGeometryLib;general;RDBoost;
>
> //Dependencies for the target
> rdInfoTheory_LIB_DEPENDS:STATIC=general;InfoTheory;general;RDBoost;
>
> //Dependencies for the target
> rdMHFPFingerprint_LIB_DEPENDS:STATIC=general;Fingerprints;general;RDBoost;
>
> //Dependencies for the target
> rdMMPA_LIB_DEPENDS:STATIC=general;MMPA;general;RDBoost;
>
> //Dependencies for the target
> rdMetricMatrixCalc_LIB_DEPENDS:STATIC=general;DataStructs;general;RDBoost;
>
> //Dependencies for the target
> rdMolAlign_LIB_DEPENDS:STATIC=general;MolAlign;general;O3AAlign;general;DataStructs;general;Descriptors;general;SmilesParse;general;RDBoost;
>
> //Dependencies for the target
> rdMolCatalog_LIB_DEPENDS:STATIC=general;MolCatalog;general;RDBoost;
>
> //Dependencies for the target
> rdMolChemicalFeatures_LIB_DEPENDS:STATIC=general;MolChemicalFeatures;general;RDBoost;
>
> //Dependencies for the target
> rdMolDescriptors_LIB_DEPENDS:STATIC=general;Descriptors;general;Fingerprints;general;RDBoost;
>
> //Dependencies for the target
> rdMolDraw2D_LIB_DEPENDS:STATIC=general;MolDraw2D;general;RDBoost;
>
> //Dependencies for the target
> rdMolEnumerator_LIB_DEPENDS:STATIC=general;MolEnumerator;general;RDBoost;
>
> //Dependencies for the target
> rdMolHash_LIB_DEPENDS:STATIC=general;MolHash;general;RDBoost;
>
> //Dependencies for the target
> rdMolInterchange_LIB_DEPENDS:STATIC=general;MolInterchange;general;RDBoost;
>
> //Dependencies for the target
> rdMolStandardize_LIB_DEPENDS:STATIC=general;MolStandardize;general;RDBoost;
>
> //Dependencies for the target
> rdMolTransforms_LIB_DEPENDS:STATIC=general;MolTransforms;general;RDBoost;
>
> //Dependencies for the target
> rdPartialCharges_LIB_DEPENDS:STATIC=general;PartialCharges;general;RDBoost;
>
> //Dependencies for the target
> rdRGroupDecomposition_LIB_DEPENDS:STATIC=general;RGroupDecomposition;general;RDBoost;
>
> //Dependencies for the target
> rdReducedGraphs_LIB_DEPENDS:STATIC=general;ReducedGraphs;general;RDBoost;
>
> //Dependencies for the target
> rdSLNParse_LIB_DEPENDS:STATIC=general;SLNParse;general;RDBoost;
>
> //Dependencies for the target
> rdScaffoldNetwork_LIB_DEPENDS:STATIC=general;ScaffoldNetwork;general;GraphMol;general;RDBoost;
>
> //Dependencies for the target
> rdShapeHelpers_LIB_DEPENDS:STATIC=general;ShapeHelpers;general;RDBoost;
>
> //Dependencies for the target
> rdSimDivPickers_LIB_DEPENDS:STATIC=general;SimDivPickers;general;DataStructs;general;RDBoost;
>
> //Dependencies for the target
> rdSubstructLibrary_LIB_DEPENDS:STATIC=general;SubstructLibrary;general;RDBoost;
>
> //Dependencies for the target
> rdTautomerQuery_LIB_DEPENDS:STATIC=general;TautomerQuery;general;RDBoost;
>
> //Dependencies for the target
> rdchem_LIB_DEPENDS:STATIC=general;SmilesParse;general;ChemTransforms;general;SubstructMatch;general;GraphMol;general;RDBoost;
>
> //Dependencies for the target
> rdfiltercatalog_LIB_DEPENDS:STATIC=general;FilterCatalog;general;RDBoost;
>
> //Dependencies for the target
> rdfragcatalog_LIB_DEPENDS:STATIC=general;FragCatalog;general;FileParsers;general;RDBoost;
>
> //Dependencies for the target
> rdmolfiles_LIB_DEPENDS:STATIC=general;SubstructMatch;general;SmilesParse;general;FileParsers;general;GraphMol;general;RDGeometryLib;general;RDGeneral;general;RDBoost;general;RDBoost;
>
> //Dependencies for the target
> rdmolops_LIB_DEPENDS:STATIC=general;ChemReactions;general;Depictor;general;FileParsers;general;SubstructMatch;general;Fingerprints;general;ChemTransforms;general;Subgraphs;general;SmilesParse;general;MolTransforms;general;GraphMol;general;RDBoost;
>
> //Dependencies for the target
> rdqueries_LIB_DEPENDS:STATIC=general;GraphMol;general;RDBoost;
>
> //Dependencies for the target
> rdtrajectory_LIB_DEPENDS:STATIC=general;Trajectory;general;RDGeometryLib;general;RDGeneral;general;RDBoost;general;GraphMol;general;RDBoost;
>
>
> ########################
> # INTERNAL cache entries
> ########################
>
> //ADVANCED property for variable: Boost_INCLUDE_DIR
> Boost_INCLUDE_DIR-ADVANCED:INTERNAL=1
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> //ADVANCED property for variable: EIGEN3_INCLUDE_DIR
> EIGEN3_INCLUDE_DIR-ADVANCED:INTERNAL=1
> //Details about finding Boost
> FIND_PACKAGE_MESSAGE_DETAILS_Boost:INTERNAL=[/usr/include][cfound components:
> system iostreams regex ][v1.74.0(1.58.0)]
> //Details about finding Cairo
> FIND_PACKAGE_MESSAGE_DETAILS_Cairo:INTERNAL=[/usr/include/cairo][/usr/lib/x86_64-linux-gnu/libcairo.so][TRUE][v()]
> //Details about finding Eigen3
> FIND_PACKAGE_MESSAGE_DETAILS_Eigen3:INTERNAL=[/usr/include/eigen3][TRUE][v(2.91.0)]
> //Details about finding Freetype
> FIND_PACKAGE_MESSAGE_DETAILS_Freetype:INTERNAL=[/usr/lib/x86_64-linux-gnu/libfreetype.so][/usr/include/freetype2][v2.13.2()]
> //Details about finding PkgConfig
> FIND_PACKAGE_MESSAGE_DETAILS_PkgConfig:INTERNAL=[/usr/bin/pkg-config][v1.8.1()]
> //Details about finding PythonInterp
> FIND_PACKAGE_MESSAGE_DETAILS_PythonInterp:INTERNAL=[/usr/bin/python3.11][v3.11.6()]
> //Details about finding PythonLibs
> FIND_PACKAGE_MESSAGE_DETAILS_PythonLibs:INTERNAL=[/usr/lib/x86_64-linux-gnu/libpython3.11.so][/usr/include/python3.11][v3.11.6()]
> //Details about finding Threads
> FIND_PACKAGE_MESSAGE_DETAILS_Threads:INTERNAL=[TRUE][v()]
> //Details about finding ZLIB
> FIND_PACKAGE_MESSAGE_DETAILS_ZLIB:INTERNAL=[/usr/lib/x86_64-linux-gnu/libz.so][/usr/include][c
> ][v1.2.13()]
> //Details about finding coordgen
> FIND_PACKAGE_MESSAGE_DETAILS_coordgen:INTERNAL=[/usr/include][/usr/lib/x86_64-linux-gnu/libcoordgen.so][v()]
> //Details about finding maeparser
> FIND_PACKAGE_MESSAGE_DETAILS_maeparser:INTERNAL=[/usr/include][/usr/lib/x86_64-linux-gnu/libmaeparser.so][v()]
> //ADVANCED property for variable: FREETYPE_INCLUDE_DIR_freetype2
> FREETYPE_INCLUDE_DIR_freetype2-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: FREETYPE_INCLUDE_DIR_ft2build
> FREETYPE_INCLUDE_DIR_ft2build-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: FREETYPE_LIBRARY_DEBUG
> FREETYPE_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: FREETYPE_LIBRARY_RELEASE
> FREETYPE_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: MAKECOMMAND
> MAKECOMMAND-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: MEMORYCHECK_COMMAND
> MEMORYCHECK_COMMAND-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: MEMORYCHECK_SUPPRESSIONS_FILE
> MEMORYCHECK_SUPPRESSIONS_FILE-ADVANCED:INTERNAL=1
> PC_CAIRO_CFLAGS:INTERNAL=-I/usr/include/cairo;-I/usr/include/libpng16;-I/usr/include/freetype2;-I/usr/include/pixman-1
> PC_CAIRO_CFLAGS_I:INTERNAL=
> PC_CAIRO_CFLAGS_OTHER:INTERNAL=
> PC_CAIRO_FOUND:INTERNAL=1
> PC_CAIRO_INCLUDEDIR:INTERNAL=/usr/include
> PC_CAIRO_INCLUDE_DIRS:INTERNAL=/usr/include/cairo;/usr/include/libpng16;/usr/include/freetype2;/usr/include/pixman-1
> PC_CAIRO_LDFLAGS:INTERNAL=-L/usr/lib/x86_64-linux-gnu;-lcairo
> PC_CAIRO_LDFLAGS_OTHER:INTERNAL=
> PC_CAIRO_LIBDIR:INTERNAL=/usr/lib/x86_64-linux-gnu
> PC_CAIRO_LIBRARIES:INTERNAL=cairo
> PC_CAIRO_LIBRARY_DIRS:INTERNAL=/usr/lib/x86_64-linux-gnu
> PC_CAIRO_LIBS:INTERNAL=
> PC_CAIRO_LIBS_L:INTERNAL=
> PC_CAIRO_LIBS_OTHER:INTERNAL=
> PC_CAIRO_LIBS_PATHS:INTERNAL=
> PC_CAIRO_MODULE_NAME:INTERNAL=cairo
> PC_CAIRO_PREFIX:INTERNAL=/usr
> PC_CAIRO_STATIC_CFLAGS:INTERNAL=-I/usr/include/cairo;-I/usr/include/libpng16;-I/usr/include/freetype2;-I/usr/include/pixman-1
> PC_CAIRO_STATIC_CFLAGS_I:INTERNAL=
> PC_CAIRO_STATIC_CFLAGS_OTHER:INTERNAL=
> PC_CAIRO_STATIC_INCLUDE_DIRS:INTERNAL=/usr/include/cairo;/usr/include/libpng16;/usr/include/freetype2;/usr/include/pixman-1
> PC_CAIRO_STATIC_LDFLAGS:INTERNAL=-L/usr/lib/x86_64-linux-gnu;-lcairo;-lm;-ldl;-L/usr/lib/x86_64-linux-gnu;-L/usr/lib/x86_64-linux-gnu;-lz;-lm;-lz;-lm;-L/usr/lib/x86_64-linux-gnu;-L/usr/lib/x86_64-linux-gnu;-lz;-lfontconfig;-lbz2;-L/usr/lib/x86_64-linux-gnu;-L/usr/lib/x86_64-linux-gnu;-lz;-lm;-lz;-lm;-L/usr/lib/x86_64-linux-gnu;-L/usr/lib/x86_64-linux-gnu;-lz;-L/usr/lib/x86_64-linux-gnu;-lbrotlicommon;-L/usr/lib/x86_64-linux-gnu;-lexpat;-lm;-lfreetype;-lbz2;-L/usr/lib/x86_64-linux-gnu;-L/usr/lib/x86_64-linux-gnu;-lz;-lpng16;-lm;-lz;-lm;-L/usr/lib/x86_64-linux-gnu;-L/usr/lib/x86_64-linux-gnu;-lz;-lbrotlidec;-L/usr/lib/x86_64-linux-gnu;-lbrotlicommon;-lX11;-lpthread;-L/usr/lib/x86_64-linux-gnu;-lxcb;-L/usr/lib/x86_64-linux-gnu;-lXau;-lXext;-L/usr/lib/x86_64-linux-gnu;-lpthread;-L/usr/lib/x86_64-linux-gnu;-lxcb;-L/usr/lib/x86_64-linux-gnu;-lXau;-lXrender;-lX11;-lpthread;-L/usr/lib/x86_64-linux-gnu;-lxcb;-L/usr/lib/x86_64-linux-gnu;-lXau;-L/usr/lib/x86_64-linux-gnu;-lX11;-lpthread;-L/usr/lib/x86_64-linux-gnu;-L/usr/lib/x86_64-linux-gnu;-lXau;-lxcb;-L/usr/lib/x86_64-linux-gnu;-lXau;-lxcb-render;-L/usr/lib/x86_64-linux-gnu;-lxcb;-L/usr/lib/x86_64-linux-gnu;-lXau;-lxcb-shm;-L/usr/lib/x86_64-linux-gnu;-lxcb;-L/usr/lib/x86_64-linux-gnu;-lXau;-lXdmcp;-lpixman-1
> PC_CAIRO_STATIC_LDFLAGS_OTHER:INTERNAL=
> PC_CAIRO_STATIC_LIBDIR:INTERNAL=
> PC_CAIRO_STATIC_LIBRARIES:INTERNAL=cairo;m;dl;z;m;z;m;z;fontconfig;bz2;z;m;z;m;z;brotlicommon;expat;m;freetype;bz2;z;png16;m;z;m;z;brotlidec;brotlicommon;X11;pthread;xcb;Xau;Xext;pthread;xcb;Xau;Xrender;X11;pthread;xcb;Xau;X11;pthread;Xau;xcb;Xau;xcb-render;xcb;Xau;xcb-shm;xcb;Xau;Xdmcp;pixman-1
> PC_CAIRO_STATIC_LIBRARY_DIRS:INTERNAL=/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu
> PC_CAIRO_STATIC_LIBS:INTERNAL=
> PC_CAIRO_STATIC_LIBS_L:INTERNAL=
> PC_CAIRO_STATIC_LIBS_OTHER:INTERNAL=
> PC_CAIRO_STATIC_LIBS_PATHS:INTERNAL=
> PC_CAIRO_VERSION:INTERNAL=1.18.0
> PC_CAIRO_cairo_INCLUDEDIR:INTERNAL=
> PC_CAIRO_cairo_LIBDIR:INTERNAL=
> PC_CAIRO_cairo_PREFIX:INTERNAL=
> PC_CAIRO_cairo_VERSION:INTERNAL=
> //ADVANCED property for variable: PKG_CONFIG_ARGN
> PKG_CONFIG_ARGN-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PKG_CONFIG_EXECUTABLE
> PKG_CONFIG_EXECUTABLE-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_Clustering
> PYTHON_ENABLE_MODULE_Clustering-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_DistGeom
> PYTHON_ENABLE_MODULE_DistGeom-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_cDataStructs
> PYTHON_ENABLE_MODULE_cDataStructs-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_cQuantize
> PYTHON_ENABLE_MODULE_cQuantize-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdAbbreviations
> PYTHON_ENABLE_MODULE_rdAbbreviations-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdAlignment
> PYTHON_ENABLE_MODULE_rdAlignment-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdBase
> PYTHON_ENABLE_MODULE_rdBase-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdCIPLabeler
> PYTHON_ENABLE_MODULE_rdCIPLabeler-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdChemReactions
> PYTHON_ENABLE_MODULE_rdChemReactions-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdChemicalFeatures
> PYTHON_ENABLE_MODULE_rdChemicalFeatures-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdCoordGen
> PYTHON_ENABLE_MODULE_rdCoordGen-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdDepictor
> PYTHON_ENABLE_MODULE_rdDepictor-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdDeprotect
> PYTHON_ENABLE_MODULE_rdDeprotect-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdDistGeom
> PYTHON_ENABLE_MODULE_rdDistGeom-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdFMCS
> PYTHON_ENABLE_MODULE_rdFMCS-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdFingerprintGenerator
> PYTHON_ENABLE_MODULE_rdFingerprintGenerator-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdForceField
> PYTHON_ENABLE_MODULE_rdForceField-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdForceFieldHelpers
> PYTHON_ENABLE_MODULE_rdForceFieldHelpers-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdGeometry
> PYTHON_ENABLE_MODULE_rdGeometry-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdInfoTheory
> PYTHON_ENABLE_MODULE_rdInfoTheory-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdMHFPFingerprint
> PYTHON_ENABLE_MODULE_rdMHFPFingerprint-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdMMPA
> PYTHON_ENABLE_MODULE_rdMMPA-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdMetricMatrixCalc
> PYTHON_ENABLE_MODULE_rdMetricMatrixCalc-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdMolAlign
> PYTHON_ENABLE_MODULE_rdMolAlign-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdMolCatalog
> PYTHON_ENABLE_MODULE_rdMolCatalog-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdMolChemicalFeatures
> PYTHON_ENABLE_MODULE_rdMolChemicalFeatures-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdMolDescriptors
> PYTHON_ENABLE_MODULE_rdMolDescriptors-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdMolDraw2D
> PYTHON_ENABLE_MODULE_rdMolDraw2D-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdMolEnumerator
> PYTHON_ENABLE_MODULE_rdMolEnumerator-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdMolHash
> PYTHON_ENABLE_MODULE_rdMolHash-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdMolInterchange
> PYTHON_ENABLE_MODULE_rdMolInterchange-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdMolStandardize
> PYTHON_ENABLE_MODULE_rdMolStandardize-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdMolTransforms
> PYTHON_ENABLE_MODULE_rdMolTransforms-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdPartialCharges
> PYTHON_ENABLE_MODULE_rdPartialCharges-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdRGroupDecomposition
> PYTHON_ENABLE_MODULE_rdRGroupDecomposition-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdReducedGraphs
> PYTHON_ENABLE_MODULE_rdReducedGraphs-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdSLNParse
> PYTHON_ENABLE_MODULE_rdSLNParse-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdScaffoldNetwork
> PYTHON_ENABLE_MODULE_rdScaffoldNetwork-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdShapeHelpers
> PYTHON_ENABLE_MODULE_rdShapeHelpers-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdSimDivPickers
> PYTHON_ENABLE_MODULE_rdSimDivPickers-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdSubstructLibrary
> PYTHON_ENABLE_MODULE_rdSubstructLibrary-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdTautomerQuery
> PYTHON_ENABLE_MODULE_rdTautomerQuery-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdchem
> PYTHON_ENABLE_MODULE_rdchem-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdfiltercatalog
> PYTHON_ENABLE_MODULE_rdfiltercatalog-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdfragcatalog
> PYTHON_ENABLE_MODULE_rdfragcatalog-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdmolfiles
> PYTHON_ENABLE_MODULE_rdmolfiles-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdmolops
> PYTHON_ENABLE_MODULE_rdmolops-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdqueries
> PYTHON_ENABLE_MODULE_rdqueries-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_ENABLE_MODULE_rdtrajectory
> PYTHON_ENABLE_MODULE_rdtrajectory-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_EXECUTABLE
> PYTHON_EXECUTABLE-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_INCLUDE_DIR
> PYTHON_INCLUDE_DIR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_LIBRARY
> PYTHON_LIBRARY-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_LIBRARY_DEBUG
> PYTHON_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_Clustering_BUILD_SHARED
> PYTHON_MODULE_Clustering_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_DistGeom_BUILD_SHARED
> PYTHON_MODULE_DistGeom_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_cDataStructs_BUILD_SHARED
> PYTHON_MODULE_cDataStructs_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_cQuantize_BUILD_SHARED
> PYTHON_MODULE_cQuantize_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdAbbreviations_BUILD_SHARED
> PYTHON_MODULE_rdAbbreviations_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdAlignment_BUILD_SHARED
> PYTHON_MODULE_rdAlignment_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdBase_BUILD_SHARED
> PYTHON_MODULE_rdBase_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdCIPLabeler_BUILD_SHARED
> PYTHON_MODULE_rdCIPLabeler_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdChemReactions_BUILD_SHARED
> PYTHON_MODULE_rdChemReactions_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable:
> PYTHON_MODULE_rdChemicalFeatures_BUILD_SHARED
> PYTHON_MODULE_rdChemicalFeatures_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdCoordGen_BUILD_SHARED
> PYTHON_MODULE_rdCoordGen_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdDepictor_BUILD_SHARED
> PYTHON_MODULE_rdDepictor_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdDeprotect_BUILD_SHARED
> PYTHON_MODULE_rdDeprotect_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdDistGeom_BUILD_SHARED
> PYTHON_MODULE_rdDistGeom_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdFMCS_BUILD_SHARED
> PYTHON_MODULE_rdFMCS_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable:
> PYTHON_MODULE_rdFingerprintGenerator_BUILD_SHARED
> PYTHON_MODULE_rdFingerprintGenerator_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable:
> PYTHON_MODULE_rdForceFieldHelpers_BUILD_SHARED
> PYTHON_MODULE_rdForceFieldHelpers_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdForceField_BUILD_SHARED
> PYTHON_MODULE_rdForceField_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdGeometry_BUILD_SHARED
> PYTHON_MODULE_rdGeometry_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdInfoTheory_BUILD_SHARED
> PYTHON_MODULE_rdInfoTheory_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdMHFPFingerprint_BUILD_SHARED
> PYTHON_MODULE_rdMHFPFingerprint_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdMMPA_BUILD_SHARED
> PYTHON_MODULE_rdMMPA_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable:
> PYTHON_MODULE_rdMetricMatrixCalc_BUILD_SHARED
> PYTHON_MODULE_rdMetricMatrixCalc_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdMolAlign_BUILD_SHARED
> PYTHON_MODULE_rdMolAlign_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdMolCatalog_BUILD_SHARED
> PYTHON_MODULE_rdMolCatalog_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable:
> PYTHON_MODULE_rdMolChemicalFeatures_BUILD_SHARED
> PYTHON_MODULE_rdMolChemicalFeatures_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdMolDescriptors_BUILD_SHARED
> PYTHON_MODULE_rdMolDescriptors_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdMolDraw2D_BUILD_SHARED
> PYTHON_MODULE_rdMolDraw2D_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdMolEnumerator_BUILD_SHARED
> PYTHON_MODULE_rdMolEnumerator_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdMolHash_BUILD_SHARED
> PYTHON_MODULE_rdMolHash_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdMolInterchange_BUILD_SHARED
> PYTHON_MODULE_rdMolInterchange_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdMolStandardize_BUILD_SHARED
> PYTHON_MODULE_rdMolStandardize_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdMolTransforms_BUILD_SHARED
> PYTHON_MODULE_rdMolTransforms_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdPartialCharges_BUILD_SHARED
> PYTHON_MODULE_rdPartialCharges_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable:
> PYTHON_MODULE_rdRGroupDecomposition_BUILD_SHARED
> PYTHON_MODULE_rdRGroupDecomposition_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdReducedGraphs_BUILD_SHARED
> PYTHON_MODULE_rdReducedGraphs_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdSLNParse_BUILD_SHARED
> PYTHON_MODULE_rdSLNParse_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdScaffoldNetwork_BUILD_SHARED
> PYTHON_MODULE_rdScaffoldNetwork_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdShapeHelpers_BUILD_SHARED
> PYTHON_MODULE_rdShapeHelpers_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdSimDivPickers_BUILD_SHARED
> PYTHON_MODULE_rdSimDivPickers_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable:
> PYTHON_MODULE_rdSubstructLibrary_BUILD_SHARED
> PYTHON_MODULE_rdSubstructLibrary_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdTautomerQuery_BUILD_SHARED
> PYTHON_MODULE_rdTautomerQuery_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdchem_BUILD_SHARED
> PYTHON_MODULE_rdchem_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdfiltercatalog_BUILD_SHARED
> PYTHON_MODULE_rdfiltercatalog_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdfragcatalog_BUILD_SHARED
> PYTHON_MODULE_rdfragcatalog_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdmolfiles_BUILD_SHARED
> PYTHON_MODULE_rdmolfiles_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdmolops_BUILD_SHARED
> PYTHON_MODULE_rdmolops_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdqueries_BUILD_SHARED
> PYTHON_MODULE_rdqueries_BUILD_SHARED-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PYTHON_MODULE_rdtrajectory_BUILD_SHARED
> PYTHON_MODULE_rdtrajectory_BUILD_SHARED-ADVANCED:INTERNAL=1
> //Python numpy development package is available
> PYTHON_NUMPY_FOUND:INTERNAL=1
> //Global list of python tests
> RDKIT_PYTEST_CACHE:INTERNAL=pythonTestDirChem;pythonTestSping;pythonTestDirVLib;pythonTestDirSimDivFilters;pythonTestDirDbase;pythonTestDirDataStructs;pythonTestDirML;pythonTestDirRoot;pythonTestDbCLI;pyFeatures;pyRanker;pySimDivPickers;pyMatCalc;pyAbbreviations;pyMolEnumerator;pyScaffoldNetworkPickling;pyScaffoldNetwork;pyMolStandardize;pyCDXMLTest;pyTestPropertyLists;pyTestMultithreadedMolSupplier;pyTestThreads;pyTestSGroups;pyTestTrajectory;pyTestConformerWrap;pyGraphMolWrap;pySLNParse;pyMolInterchange;pyRGroupDecomposition;pySubstructLibrary;pyReducedGraphs;pyDeprotect;pyCIPLabelsValidation;pyCIPLabelsWrapTest;pyMMPA;pyMolHash;pyFMCS;pyMolDraw2D;pyMolCatalog;pyShapeHelpers;pyChemicalFeatures;pyMolAlign;pyDistGeomHelpers;pyForceFieldHelpers;pyMolTransforms;pyPartialCharges;pyTestMHFP;pyTestGenerator;pyMolDescriptors3D;pyMolDescriptors;pyFragCatalog;pyFilterCatalog;pyTautomerQuery;pyChemReactionSanitize;pyChemReactionEnumerations;pyChemReactions;pyDepictor;pyDistGeom;pyForceFieldConstraints;pyAlignment;testPyGeometry;pyFPB;pySparseIntVect;pyDiscreteValueVect;pyBV;pyCoordGen;
> //ADVANCED property for variable: SITE
> SITE-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: ZLIB_INCLUDE_DIR
> ZLIB_INCLUDE_DIR-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: ZLIB_LIBRARY_DEBUG
> ZLIB_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: ZLIB_LIBRARY_RELEASE
> ZLIB_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
> //Components requested for this build tree.
> _Boost_COMPONENTS_SEARCHED:INTERNAL=iostreams;program_options;python-py311;python3;python311;regex;serialization;system
> //Last used Boost_INCLUDE_DIR value.
> _Boost_INCLUDE_DIR_LAST:INTERNAL=/usr/include
> //Last used Boost_LIBRARY_DIR_DEBUG value.
> _Boost_LIBRARY_DIR_DEBUG_LAST:INTERNAL=/usr/lib/x86_64-linux-gnu
> //Last used Boost_LIBRARY_DIR_RELEASE value.
> _Boost_LIBRARY_DIR_RELEASE_LAST:INTERNAL=/usr/lib/x86_64-linux-gnu
> //Last used Boost_NAMESPACE value.
> _Boost_NAMESPACE_LAST:INTERNAL=boost
> //Last used Boost_USE_MULTITHREADED value.
> _Boost_USE_MULTITHREADED_LAST:INTERNAL=TRUE
> //linker supports push/pop state
> _CMAKE_LINKER_PUSHPOP_STATE_SUPPORTED:INTERNAL=TRUE
> __pkg_config_arguments_PC_CAIRO:INTERNAL=cairo;QUIET
> __pkg_config_checked_PC_CAIRO:INTERNAL=1
> //ADVANCED property for variable: pkgcfg_lib_PC_CAIRO_cairo
> pkgcfg_lib_PC_CAIRO_cairo-ADVANCED:INTERNAL=1
> prefix_result:INTERNAL=/usr/lib/x86_64-linux-gnu
>
> dh_auto_configure: error: cd obj-x86_64-linux-gnu &&
> DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr
> -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc
> -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
> -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF
> -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON
> -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
> -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles"
> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu
> -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON -DRDK_INSTALL_INTREE=OFF
> -DRDK_INSTALL_STATIC_LIBS=OFF -DRDK_BUILD_THREADSAFE_SSS=ON
> -DRDK_BUILD_PYTHON_WRAPPERS=ON -DRDK_OPTIMIZE_POPCNT=OFF -DRDK_USE_URF=OFF
> -DRDK_INSTALL_COMIC_FONTS=OFF -DRDK_BUILD_CAIRO_SUPPORT=ON
> -DBoost_NO_BOOST_CMAKE=TRUE -DCMAKE_INSTALL_PREFIX=/usr
> -DCATCH_DIR=/usr/include/catch2 -DPYTHON_EXECUTABLE=/usr/bin/python3.11 ../
> .. returned exit code 1
> make[1]: *** [debian/rules:88: override_dh_auto_configure] Error 2
The full build log is available from:
http://qa-logs.debian.net/2023/10/27/rdkit_202303.3-3_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20231027;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20231027&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: rdkit
Source-Version: 202309.2-1
Done: Michael Banck <mba...@debian.org>
We believe that the bug you reported is fixed in the latest version of
rdkit, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1054...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael Banck <mba...@debian.org> (supplier of updated rdkit package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 12 Nov 2023 20:13:03 +0100
Source: rdkit
Architecture: source
Version: 202309.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Michael Banck <mba...@debian.org>
Closes: 1054790
Changes:
rdkit (202309.2-1) unstable; urgency=medium
.
* New upstream release.
* debian/patches/sphinx_imgconverter.patch: Refreshed.
* debian/patches/sphinx_compile_fixes.patch: Likewise.
* debian/patches/catch2_header.patch: Removed, no longer needed.
* debian/patches/catch2_v3_support.patch: New patch, add support for v3 of
catch2 as system library, taken from upstream pull request #6898 (Closes:
#1054790).
* debian/patches/pg16: Updated with changes from upstream pull request #6733.
* debian/patches/postgres_Makefile_fixes.patch: Updated for new changes.
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--- End Message ---