Package: src:kalzium
Version: 4:22.12.3-1
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules binary
dh binary --with kf5
dh_update_autotools_config
dh_autoreconf
dh_auto_configure --buildsystem=kf5
cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake
-DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc
-DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON
-DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
-DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON
-DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=Debian
-DCMAKE_INSTALL_SYSCONFDIR=/etc -DKDE_INSTALL_USE_QT_SYS_PATHS=ON ..
-- The C compiler identification is GNU 13.2.0
-- The CXX compiler identification is GNU 13.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for __GLIBC__
-- Looking for __GLIBC__ - found
-- Performing Test _OFFT_IS_64BIT
-- Performing Test _OFFT_IS_64BIT - Success
-- Performing Test HAVE_DATE_TIME
-- Performing Test HAVE_DATE_TIME - Success
-- Could not set up the appstream test. appstreamcli is missing.
-- Found Gettext: /usr/bin/msgmerge (found version "0.21")
CMake Warning (dev) at CMakeLists.txt:39 (find_package):
Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
are removed. Run "cmake --help-policy CMP0148" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found PythonInterp: /usr/bin/python3 (found version "3.11.7")
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1")
-- Found OCaml: /usr/bin/ocamlc
-- Found Libfacile: /usr/lib/ocaml/facile
-- Checking for module 'chemical-mime-data'
-- Found chemical-mime-data, version 0.1.94
-- Looking for include file ieeefp.h
-- Looking for include file ieeefp.h - not found
-- Found KF5Archive: /usr/lib/x86_64-linux-gnu/cmake/KF5Archive/KF5ArchiveConfig.cmake
(found version "5.107.0")
-- Found KF5Config: /usr/lib/x86_64-linux-gnu/cmake/KF5Config/KF5ConfigConfig.cmake
(found version "5.107.0")
-- Found KF5CoreAddons:
/usr/lib/x86_64-linux-gnu/cmake/KF5CoreAddons/KF5CoreAddonsConfig.cmake (found version
"5.107.0")
-- Found KF5DocTools: /usr/lib/x86_64-linux-gnu/cmake/KF5DocTools/KF5DocToolsConfig.cmake
(found version "5.107.0")
-- Found KF5I18n: /usr/lib/x86_64-linux-gnu/cmake/KF5I18n/KF5I18nConfig.cmake (found
version "5.107.0")
-- Found X11: /usr/include
-- Looking for XOpenDisplay in
/usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so
-- Looking for XOpenDisplay in
/usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Found KF5Parts: /usr/lib/x86_64-linux-gnu/cmake/KF5Parts/KF5PartsConfig.cmake (found
version "5.107.0")
-- Found KF5Plotting: /usr/lib/x86_64-linux-gnu/cmake/KF5Plotting/KF5PlottingConfig.cmake
(found version "5.107.0")
-- Found KF5UnitConversion:
/usr/lib/x86_64-linux-gnu/cmake/KF5UnitConversion/KF5UnitConversionConfig.cmake (found
version "5.107.0")
-- Found KF5WidgetsAddons:
/usr/lib/x86_64-linux-gnu/cmake/KF5WidgetsAddons/KF5WidgetsAddonsConfig.cmake (found
version "5.107.0")
-- Found KF5: success (found suitable version "5.107.0", minimum required is
"5.90.0") found components: Archive Config CoreAddons DocTools I18n Parts Plotting
UnitConversion WidgetsAddons
-- Kalzium molecular editor enabled
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- The following OPTIONAL packages have been found:
* PkgConfig
* OpenBabel3 (required version >= 3.1)
* AvogadroLibs
* Eigen3
* OCaml
* Libfacile
-- The following REQUIRED packages have been found:
* ECM (required version >= 5.90.0)
* PythonInterp
* Qt5Svg
* Qt5Script
* Qt5 (required version >= 5.15.2)
* KF5Archive (required version >= 5.90.0)
* KF5DocTools (required version >= 5.90.0)
* Qt5Gui (required version >= 5.15.2)
* Gettext
* KF5I18n (required version >= 5.107.0)
* KF5Parts (required version >= 5.90.0)
* KF5Plotting (required version >= 5.90.0)
* KF5UnitConversion (required version >= 5.90.0)
* KF5 (required version >= 5.90.0)
* Qt5OpenGL (required version >= 5.15.2)
* Qt5Widgets (required version >= 5.15.2)
* Qt5Xml (required version >= 5.15.2)
* KF5Config (required version >= 5.107.0)
* Qt5Core (required version >= 5.15.2)
* KF5WidgetsAddons (required version >= 5.107.0)
* KF5NewStuff (required version >= 5.90.0)
-- Configuring done (1.4s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_RUNSTATEDIR
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
dh_auto_build --buildsystem=kf5
cd obj-x86_64-linux-gnu && make -j2 "INSTALL=install
--strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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make -f CMakeFiles/Makefile2 all
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make -f CMakeFiles/pofiles-ecbf91b10d2d8e06790b749b9a1e2072.dir/build.make
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make -f CMakeFiles/tsfiles-ecbf91b10d2d8e06790b749b9a1e2072.dir/build.make
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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/usr/bin/cmake -DGETTEXT_MSGFMT_EXECUTABLE=/usr/bin/msgfmt
-DCOPY_TO=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/locale
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Note: meta source : no *info/productname or alternative kalzium
Note: meta source : see http://www.docbook.org/tdg5/en/html/produ kalzium
Note: meta source : no refentry/refmeta/refmiscinfo@class=source kalzium
Note: meta source : see http://www.docbook.org/tdg5/en/html/refmi kalzium
Note: meta version: no *info/productnumber or alternative kalzium
Note: meta version: see http://www.docbook.org/tdg5/en/html/produ kalzium
Note: meta version: no refentry/refmeta/refmiscinfo@class=version kalzium
Note: meta version: see http://www.docbook.org/tdg5/en/html/refmi kalzium
Warn: meta source : no fallback for source, so inserted a fixme kalzium
Note: meta manual : no titled ancestor of refentry kalzium
Note: meta manual : no refentry/refmeta/refmiscinfo@class=manual kalzium
Note: meta manual : see http://www.docbook.org/tdg5/en/html/refmi kalzium
Warn: meta manual : no fallback for manual, so inserted a fixme kalzium
Warn: AUTHOR sect.: no personblurb|contrib for Ben Burton kalzium
Note: AUTHOR sect.: see http://www.docbook.org/tdg5/en/html/contr kalzium
Note: AUTHOR sect.: see http://www.docbook.org/tdg5/en/html/perso kalzium
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/<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/po-pt-BR-docs-kalzium-kalzium-1.dir/DependInfo.cmake "--color="
[ 17%] Generating po/pt_BR/docs/kalzium/index.cache.bz2
cd /<<PKGBUILDDIR>> && /usr/bin/meinproc5 --check --cache
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/po/pt_BR/docs/kalzium/index.cache.bz2
po/pt_BR/docs/kalzium/index.docbook
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f CMakeFiles/po-pt-BR-docs-kalzium-kalzium-1.dir/build.make
CMakeFiles/po-pt-BR-docs-kalzium-kalzium-1.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 17%] Generating po/pt_BR/docs/kalzium/kalzium.1
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/po/pt_BR/docs/kalzium && /usr/bin/meinproc5
--stylesheet /usr/share/kf5/kdoctools/customization/kde-include-man.xsl --check
/<<PKGBUILDDIR>>/po/pt_BR/docs/kalzium/man-kalzium.1.docbook
I/O warning : failed to load external entity
"/usr/share/kf5/kdoctools/customization/xsl/pt-BR.xml"
No "pt_br" localization of "footer-doc-comment" exists; using "en".
No "pt_br" localization of "footer-doc-feedback" exists; using "en".
No "pt_br" localization of "footer-doc-teamname" exists; using "en".
No "pt_br" localization of "footer-doc-comment" exists; using "en".
No "pt_br" localization of "footer-doc-feedback" exists; using "en".
No "pt_br" localization of "footer-doc-teamname" exists; using "en".
No "pt_br" localization of "footer-doc-comment" exists; using "en".
No "pt_br" localization of "footer-doc-feedback" exists; using "en".
No "pt_br" localization of "footer-doc-teamname" exists; using "en".
Note: Writing kalzium.1
No "pt_br" localization of "footer-doc-comment" exists; using "en".
No "pt_br" localization of "footer-doc-feedback" exists; using "en".
No "pt_br" localization of "footer-doc-teamname" exists; using "en".
No "pt_br" localization of "footer-doc-comment" exists; using "en".
No "pt_br" localization of "footer-doc-feedback" exists; using "en".
No "pt_br" localization of "footer-doc-teamname" exists; using "en".
No "pt_br" localization of "footer-doc-comment" exists; using "en".
No "pt_br" localization of "footer-doc-feedback" exists; using "en".
No "pt_br" localization of "footer-doc-teamname" exists; using "en".
No "pt_br" localization of "footer-doc-comment" exists; using "en".
No "pt_br" localization of "footer-doc-feedback" exists; using "en".
No "pt_br" localization of "footer-doc-teamname" exists; using "en".
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 17%] Built target po-pt-BR-docs-kalzium-kalzium-1
make -f CMakeFiles/po-ru-docs-kalzium-index-cache-bz2.dir/build.make
CMakeFiles/po-ru-docs-kalzium-index-cache-bz2.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>
/<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/po-ru-docs-kalzium-index-cache-bz2.dir/DependInfo.cmake "--color="
No "pt_br" localization of "footer-doc-comment" exists; using "en".
No "pt_br" localization of "footer-doc-feedback" exists; using "en".
No "pt_br" localization of "footer-doc-teamname" exists; using "en".
No "pt_br" localization of "footer-doc-comment" exists; using "en".
No "pt_br" localization of "footer-doc-feedback" exists; using "en".
No "pt_br" localization of "footer-doc-teamname" exists; using "en".
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f CMakeFiles/po-ru-docs-kalzium-index-cache-bz2.dir/build.make
CMakeFiles/po-ru-docs-kalzium-index-cache-bz2.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
No "pt_br" localization of "footer-doc-comment" exists; using "en".
No "pt_br" localization of "footer-doc-feedback" exists; using "en".
No "pt_br" localization of "footer-doc-teamname" exists; using "en".
[ 17%] Generating po/ru/docs/kalzium/index.cache.bz2
cd /<<PKGBUILDDIR>> && /usr/bin/meinproc5 --check --cache
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/po/ru/docs/kalzium/index.cache.bz2
po/ru/docs/kalzium/index.docbook
No "pt_br" localization of "footer-doc-comment" exists; using "en".
No "pt_br" localization of "footer-doc-feedback" exists; using "en".
No "pt_br" localization of "footer-doc-teamname" exists; using "en".
No "pt_br" localization of "footer-doc-comment" exists; using "en".
No "pt_br" localization of "footer-doc-feedback" exists; using "en".
No "pt_br" localization of "footer-doc-teamname" exists; using "en".
No "pt_br" localization of "footer-doc-comment" exists; using "en".
No "pt_br" localization of "footer-doc-feedback" exists; using "en".
No "pt_br" localization of "footer-doc-teamname" exists; using "en".
No "pt_br" localization of "footer-doc-comment" exists; using "en".
No "pt_br" localization of "footer-doc-feedback" exists; using "en".
No "pt_br" localization of "footer-doc-teamname" exists; using "en".
No "pt_br" localization of "footer-doc-comment" exists; using "en".
No "pt_br" localization of "footer-doc-feedback" exists; using "en".
No "pt_br" localization of "footer-doc-teamname" exists; using "en".
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 17%] Built target po-pt-BR-docs-kalzium-index-cache-bz2
make -f CMakeFiles/po-ru-docs-kalzium-kalzium-1.dir/build.make
CMakeFiles/po-ru-docs-kalzium-kalzium-1.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>
/<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/po-ru-docs-kalzium-kalzium-1.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f CMakeFiles/po-ru-docs-kalzium-kalzium-1.dir/build.make
CMakeFiles/po-ru-docs-kalzium-kalzium-1.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 18%] Generating po/ru/docs/kalzium/kalzium.1
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/po/ru/docs/kalzium && /usr/bin/meinproc5
--stylesheet /usr/share/kf5/kdoctools/customization/kde-include-man.xsl --check
/<<PKGBUILDDIR>>/po/ru/docs/kalzium/man-kalzium.1.docbook
Note: meta source : no *info/productname or alternative kalzium
Note: meta source : see http://www.docbook.org/tdg5/en/html/produ kalzium
Note: meta source : no refentry/refmeta/refmiscinfo@class=source kalzium
Note: meta source : see http://www.docbook.org/tdg5/en/html/refmi kalzium
Note: meta version: no *info/productnumber or alternative kalzium
Note: meta version: see http://www.docbook.org/tdg5/en/html/produ kalzium
Note: meta version: no refentry/refmeta/refmiscinfo@class=version kalzium
Note: meta version: see http://www.docbook.org/tdg5/en/html/refmi kalzium
Warn: meta source : no fallback for source, so inserted a fixme kalzium
Note: meta manual : no titled ancestor of refentry kalzium
Note: meta manual : no refentry/refmeta/refmiscinfo@class=manual kalzium
Note: meta manual : see http://www.docbook.org/tdg5/en/html/refmi kalzium
Warn: meta manual : no fallback for manual, so inserted a fixme kalzium
Warn: AUTHOR sect.: no personblurb|contrib for Ben Burton kalzium
Note: AUTHOR sect.: see http://www.docbook.org/tdg5/en/html/contr kalzium
Note: AUTHOR sect.: see http://www.docbook.org/tdg5/en/html/perso kalzium
Note: Writing kalzium.1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 18%] Built target po-ru-docs-kalzium-kalzium-1
make -f CMakeFiles/po-sv-docs-kalzium-index-cache-bz2.dir/build.make
CMakeFiles/po-sv-docs-kalzium-index-cache-bz2.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>
/<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/po-sv-docs-kalzium-index-cache-bz2.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f CMakeFiles/po-sv-docs-kalzium-index-cache-bz2.dir/build.make
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 18%] Generating po/sv/docs/kalzium/index.cache.bz2
cd /<<PKGBUILDDIR>> && /usr/bin/meinproc5 --check --cache
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/po/sv/docs/kalzium/index.cache.bz2
po/sv/docs/kalzium/index.docbook
[ 18%] Built target po-ru-docs-kalzium-index-cache-bz2
make -f CMakeFiles/po-sv-docs-kalzium-kalzium-1.dir/build.make
CMakeFiles/po-sv-docs-kalzium-kalzium-1.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>
/<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/po-sv-docs-kalzium-kalzium-1.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f CMakeFiles/po-sv-docs-kalzium-kalzium-1.dir/build.make
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 19%] Generating po/sv/docs/kalzium/kalzium.1
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/po/sv/docs/kalzium && /usr/bin/meinproc5
--stylesheet /usr/share/kf5/kdoctools/customization/kde-include-man.xsl --check
/<<PKGBUILDDIR>>/po/sv/docs/kalzium/man-kalzium.1.docbook
Note: Writing kalzium.1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 19%] Built target po-sv-docs-kalzium-kalzium-1
make -f CMakeFiles/po-uk-docs-kalzium-index-cache-bz2.dir/build.make
CMakeFiles/po-uk-docs-kalzium-index-cache-bz2.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>
/<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/po-uk-docs-kalzium-index-cache-bz2.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f CMakeFiles/po-uk-docs-kalzium-index-cache-bz2.dir/build.make
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 20%] Generating po/uk/docs/kalzium/index.cache.bz2
cd /<<PKGBUILDDIR>> && /usr/bin/meinproc5 --check --cache
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/po/uk/docs/kalzium/index.cache.bz2
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make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 20%] Built target po-sv-docs-kalzium-index-cache-bz2
make -f CMakeFiles/po-uk-docs-kalzium-kalzium-1.dir/build.make
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>
/<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/po-uk-docs-kalzium-kalzium-1.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f CMakeFiles/po-uk-docs-kalzium-kalzium-1.dir/build.make
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 20%] Generating po/uk/docs/kalzium/kalzium.1
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/po/uk/docs/kalzium && /usr/bin/meinproc5
--stylesheet /usr/share/kf5/kdoctools/customization/kde-include-man.xsl --check
/<<PKGBUILDDIR>>/po/uk/docs/kalzium/man-kalzium.1.docbook
Note: Writing kalzium.1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 20%] Built target po-uk-docs-kalzium-kalzium-1
make -f compoundviewer/CMakeFiles/compoundviewer_autogen.dir/build.make
compoundviewer/CMakeFiles/compoundviewer_autogen.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>
/<<PKGBUILDDIR>>/compoundviewer /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/compoundviewer
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/compoundviewer/CMakeFiles/compoundviewer_autogen.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f compoundviewer/CMakeFiles/compoundviewer_autogen.dir/build.make
compoundviewer/CMakeFiles/compoundviewer_autogen.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 21%] Built target po-uk-docs-kalzium-index-cache-bz2
[ 21%] Automatic MOC for target compoundviewer
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/compoundviewer && /usr/bin/cmake -E cmake_autogen
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/compoundviewer/CMakeFiles/compoundviewer_autogen.dir/AutogenInfo.json
Debian
make -f doc/CMakeFiles/doc-index-cache-bz2.dir/build.make
doc/CMakeFiles/doc-index-cache-bz2.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>
/<<PKGBUILDDIR>>/doc /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/CMakeFiles/doc-index-cache-bz2.dir/DependInfo.cmake "--color="
AutoGen: Refreshing parse cache because it doesn't exist.
AutoMoc: Generating
"SRC:/obj-x86_64-linux-gnu/compoundviewer/compoundviewer_autogen/moc_predefs.h",
because it doesn't exist.
/usr/bin/c++ -std=gnu++14 -dM -E -c /usr/share/cmake-3.27/Modules/CMakeCXXCompilerABI.cpp -DKCOREADDONS_LIB
-DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_URL_CAST_FROM_STRING -DQT_OPENGL_LIB -DQT_WIDGETS_LIB
-D_GNU_SOURCE -D_LARGEFILE64_SOURCE -Dcompoundviewer_EXPORTS
-I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/compoundviewer -I/<<PKGBUILDDIR>>/compoundviewer
-I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/usr/include/KF5/KI18n -I/usr/include/KF5
-I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore
-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/KF5/KWidgetsAddons
-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui
-I/usr/include/KF5/KCoreAddons -I/usr/include/x86_64-linux-gnu/qt5/QtOpenGL -I/usr/include/openbabel3
-I/usr/include/eigen3 -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13
-I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include
-I/usr/include/x86_64-linux-gnu
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f doc/CMakeFiles/doc-index-cache-bz2.dir/build.make
doc/CMakeFiles/doc-index-cache-bz2.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
AutoGen: Parsing "SRC:/compoundviewer/iowrapper.h"
AutoGen: Parsing "SRC:/compoundviewer/kalziumglwidget.h"
AutoGen: Parsing "SRC:/compoundviewer/iowrapper.cpp"
AutoGen: Parsing "SRC:/compoundviewer/kalziumglwidget.cpp"
AutoMoc: Generating
"SRC:/obj-x86_64-linux-gnu/compoundviewer/compoundviewer_autogen/EWIEGA46WW/moc_kalziumglwidget.cpp",
because it doesn't exist, from "SRC:/compoundviewer/kalziumglwidget.h"
/usr/lib/qt5/bin/moc -DKCOREADDONS_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_URL_CAST_FROM_STRING -DQT_OPENGL_LIB -DQT_WIDGETS_LIB
-D_GNU_SOURCE -D_LARGEFILE64_SOURCE -Dcompoundviewer_EXPORTS -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/compoundviewer
-I/<<PKGBUILDDIR>>/compoundviewer -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/usr/include/KF5/KI18n -I/usr/include/KF5
-I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++
-I/usr/include/KF5/KWidgetsAddons -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui
-I/usr/include/KF5/KCoreAddons -I/usr/include/x86_64-linux-gnu/qt5/QtOpenGL -I/usr/include/openbabel3 -I/usr/include/eigen3 -I/usr/include
-I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include
-I/usr/local/include -I/usr/include/x86_64-linux-gnu --include
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/compoundviewer/compoundviewer_autogen/moc_predefs.h --output-dep-file -o
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/compoundviewer/compoundviewer_autogen/EWIEGA46WW/moc_kalziumglwidget.cpp
/<<PKGBUILDDIR>>/compoundviewer/kalziumglwidget.h
[ 21%] Generating index.cache.bz2
cd /<<PKGBUILDDIR>>/doc && /usr/bin/meinproc5 --check --cache
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc//index.cache.bz2 index.docbook
AutoMoc: Reading dependencies from
"SRC:/obj-x86_64-linux-gnu/compoundviewer/compoundviewer_autogen/EWIEGA46WW/moc_kalziumglwidget.cpp.d"
AutoMoc: Generating MOC compilation
"SRC:/obj-x86_64-linux-gnu/compoundviewer/compoundviewer_autogen/mocs_compilation.cpp"
AutoGen: Writing the parse cache file
"SRC:/obj-x86_64-linux-gnu/compoundviewer/CMakeFiles/compoundviewer_autogen.dir/ParseCache.txt"
AutoGen: Writing the settings file
"SRC:/obj-x86_64-linux-gnu/compoundviewer/CMakeFiles/compoundviewer_autogen.dir/AutogenUsed.txt"
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 21%] Built target compoundviewer_autogen
make -f doc/CMakeFiles/doc-kalzium-1.dir/build.make
doc/CMakeFiles/doc-kalzium-1.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>
/<<PKGBUILDDIR>>/doc /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/CMakeFiles/doc-kalzium-1.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f doc/CMakeFiles/doc-kalzium-1.dir/build.make
doc/CMakeFiles/doc-kalzium-1.dir/build
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/usr/include/KF5/KUnitConversion -isystem /usr/include/KF5 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore
-isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/KF5/KWidgetsAddons -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem
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-DQT_WIDGETS_LIB -DQT_XML_LIB -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -Dscience_EXPORTS -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/libscience
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/usr/include/KF5/KUnitConversion -isystem /usr/include/KF5 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore
-isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/KF5/KWidgetsAddons -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem
/usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/KF5/KI18n -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -g -O2
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[ 25%] Building CXX object libscience/CMakeFiles/science.dir/spectrum.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/libscience && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_URL_CAST_FROM_STRING
-DQT_WIDGETS_LIB -DQT_XML_LIB -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -Dscience_EXPORTS -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/libscience
-I/<<PKGBUILDDIR>>/libscience -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/libscience/science_autogen/include -isystem
/usr/include/KF5/KUnitConversion -isystem /usr/include/KF5 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore
-isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/KF5/KWidgetsAddons -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem
/usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/KF5/KI18n -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -g -O2
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-DQT_NO_URL_CAST_FROM_STRING -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -Dcompoundviewer_EXPORTS
-I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/compoundviewer -I/<<PKGBUILDDIR>>/compoundviewer
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-isystem /usr/include/KF5/KI18n -isystem /usr/include/KF5 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem
/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/KF5/KWidgetsAddons -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem
/usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/KF5/KCoreAddons -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/openbabel3 -isystem
/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security
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[ 26%] Building CXX object libscience/CMakeFiles/science.dir/isotope.cpp.o
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-DQT_WIDGETS_LIB -DQT_XML_LIB -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -Dscience_EXPORTS -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/libscience
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/usr/include/KF5/KUnitConversion -isystem /usr/include/KF5 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore
-isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/KF5/KWidgetsAddons -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem
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[ 27%] Building CXX object
compoundviewer/CMakeFiles/compoundviewer.dir/kalziumglwidget.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/compoundviewer && /usr/bin/c++ -DKCOREADDONS_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG
-DQT_NO_URL_CAST_FROM_STRING -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -Dcompoundviewer_EXPORTS
-I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/compoundviewer -I/<<PKGBUILDDIR>>/compoundviewer
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-isystem /usr/include/KF5/KI18n -isystem /usr/include/KF5 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem
/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/KF5/KWidgetsAddons -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem
/usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/KF5/KCoreAddons -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem /usr/include/openbabel3 -isystem
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/<<PKGBUILDDIR>>/compoundviewer/kalziumglwidget.cpp
[ 28%] Building CXX object libscience/CMakeFiles/science.dir/elementparser.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/libscience && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_URL_CAST_FROM_STRING
-DQT_WIDGETS_LIB -DQT_XML_LIB -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -Dscience_EXPORTS -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/libscience
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/usr/include/KF5/KUnitConversion -isystem /usr/include/KF5 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore
-isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/KF5/KWidgetsAddons -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem
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cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/libscience && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_URL_CAST_FROM_STRING
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-isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/KF5/KWidgetsAddons -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem
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../bin/libcompoundviewer.so.5.0.0
CMakeFiles/compoundviewer.dir/compoundviewer_autogen/mocs_compilation.cpp.o
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std::char_traits<char>, std::allocator<char> > const&, int) const'
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/usr/include/c++/13/bits/unique_ptr.h:1070:(.text+0x3a5): undefined reference
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`std::__detail::_MakeUniq<Avogadro::Io::PdbFormat>::__single_object
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/usr/include/c++/13/bits/unique_ptr.h:1070:(.text+0x418): undefined reference
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/usr/bin/ld: CMakeFiles/compoundviewer.dir/iowrapper.cpp.o: in function
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/usr/include/c++/13/bits/unique_ptr.h:1070:(.text+0x4c1): undefined reference
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/usr/bin/ld: CMakeFiles/compoundviewer.dir/iowrapper.cpp.o: in function
`std::__detail::_MakeUniq<Avogadro::Core::Molecule>::__single_object
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/usr/include/c++/13/bits/unique_ptr.h:1070:(.text+0x828): undefined reference
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/usr/bin/ld: CMakeFiles/compoundviewer.dir/iowrapper.cpp.o: in function
`IoWrapper::writeMolecule(QString const&, Avogadro::Core::Molecule*)':
./obj-x86_64-linux-gnu/compoundviewer/./compoundviewer/iowrapper.cpp:57:(.text+0xf3b):
undefined reference to `Avogadro::Io::CmlFormat::CmlFormat()'
/usr/bin/ld:
./obj-x86_64-linux-gnu/compoundviewer/./compoundviewer/iowrapper.cpp:58:(.text+0xf4d):
undefined reference to `Avogadro::Io::CmlFormat::write(std::ostream&,
Avogadro::Core::Molecule const&)'
/usr/bin/ld:
./obj-x86_64-linux-gnu/compoundviewer/./compoundviewer/iowrapper.cpp:63:(.text+0xf62):
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collect2: error: ld returned 1 exit status
make[3]: *** [compoundviewer/CMakeFiles/compoundviewer.dir/build.make:132:
bin/libcompoundviewer.so.5.0.0] Error 1
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libscience/CMakeFiles/science.dir/chemicaldataobject.cpp.o
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-DQT_WIDGETS_LIB -DQT_XML_LIB -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -Dscience_EXPORTS -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/libscience
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-isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/KF5/KWidgetsAddons -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem
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libscience/CMakeFiles/science.dir/moleculeparser.cpp.o
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-isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/KF5/KWidgetsAddons -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem
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cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/libscience && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_URL_CAST_FROM_STRING
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-isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/KF5/KWidgetsAddons -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem
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CMakeFiles/science.dir/kalzium_libscience_debug.cpp.o CMakeFiles/science.dir/element.cpp.o
CMakeFiles/science.dir/spectrum.cpp.o CMakeFiles/science.dir/isotope.cpp.o
CMakeFiles/science.dir/spectrumparser.cpp.o CMakeFiles/science.dir/elementparser.cpp.o
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dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
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The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202312/
About the archive rebuild: The build was made using virtual machines
from AWS, with enough memory, enough disk, and either one or two
CPUs, using a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
