Your message dated Thu, 14 Mar 2024 20:46:58 +0000
with message-id <[email protected]>
and subject line Bug#1066363: fixed in seqprep 1.3.2-9
has caused the Debian Bug report #1066363,
regarding seqprep: FTBFS: SeqPrep.c:166:15: error: implicit declaration of
function ‘getopt’ [-Werror=implicit-function-declaration]
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1066363: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1066363
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: seqprep
Version: 1.3.2-8
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-20240313 ftbfs-trixie ftbfs-impfuncdef
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
This is most likely caused by a change in dpkg 1.22.6, that enabled
-Werror=implicit-function-declaration. For more information, see
https://wiki.debian.org/qa.debian.org/FTBFS#A2024-03-13_-Werror.3Dimplicit-function-declaration
Relevant part (hopefully):
> cc -g -O2 -Werror=implicit-function-declaration
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -std=gnu90 -c -Wall -O0 -g -std=c99 stdaln.c -o stdaln.o
> SeqPrep.c: In function ‘main’:
> SeqPrep.c:166:15: error: implicit declaration of function ‘getopt’
> [-Werror=implicit-function-declaration]
> 166 | while( (ich=getopt( argc, argv,
> "f:r:1:2:3:4:q:A:s:y:B:O:E:x:M:N:L:o:m:b:w:W:p:P:X:Q:t:e:Z:n:S6ghz" )) != -1
> ) {
> | ^~~~~~
> cc1: some warnings being treated as errors
> make[2]: *** [Makefile:18: SeqPrep.o] Error 1
The full build log is available from:
http://qa-logs.debian.net/2024/03/13/seqprep_1.3.2-8_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240313;[email protected]
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240313&[email protected]&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: seqprep
Source-Version: 1.3.2-9
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
seqprep, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated seqprep package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 14 Mar 2024 20:32:47 +0100
Source: seqprep
Architecture: source
Version: 1.3.2-9
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1066363
Changes:
seqprep (1.3.2-9) unstable; urgency=medium
.
* Team upload.
* fix-declarations.patch: new: fix ftbfs. (Closes: #1066363)
* Add ITP bug in seqprep version 1.1-0biolinux1.
* Update standards version to 4.6.2, no changes needed.
Checksums-Sha1:
5802908e184fe2ac00724995492eee6fcf99284f 2260 seqprep_1.3.2-9.dsc
11f37baa93c01a1a0d426c8be5962c16456a0179 12468 seqprep_1.3.2-9.debian.tar.xz
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seqprep_1.3.2-9.dsc
53981b79fe38cce3023ba0ab9886195dcd2fd393c0057cd8ef43ffe06bbe32db 12468
seqprep_1.3.2-9.debian.tar.xz
Files:
3b4c47e2da1c654e788fcec77ce34955 2260 science optional seqprep_1.3.2-9.dsc
597564b70492bef8006e45a6892f3b76 12468 science optional
seqprep_1.3.2-9.debian.tar.xz
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