Source: python-pybedtools Version: 0.9.1-1 Severity: serious Tags: ftbfs Justification: fails to build from source (but built successfully in the past)
Dear maintainer, python-pybedtools fails to build from source due to errors in the testsuite. From my build log on amd64: | =========================== short test summary info ============================ | FAILED pybedtools/test/test_gzip_support.py::test_gzipped_file_types_are_bed | FAILED pybedtools/test/test_gzip_support.py::test_gzipped_files_can_be_intersected | FAILED pybedtools/test/test_gzip_support.py::test_gzipped_files_are_iterable_as_normal | FAILED pybedtools/test/test_gzip_support.py::test_str_representation_of_gzipped_files_is_the_same_as_normal | FAILED pybedtools/test/test_gzip_support.py::test_head_of_gzipped_files_is_the_same_as_normal | FAILED pybedtools/test/test_gzip_support.py::test_gzipped_output - FileNotFou... | FAILED pybedtools/test/test_gzip_support.py::test_gzipping_is_default_when_extension_is_dot_gz | FAILED pybedtools/test/test_gzip_support.py::test_gzipping_can_be_turned_off_even_for_dot_gz | FAILED pybedtools/test/test_issues.py::test_issue_169 - UnicodeDecodeError: '... | FAILED pybedtools/test/test_issues.py::test_issue_196 - OSError: Could not op... | FAILED pybedtools/test/test_issues.py::test_issue_180 - OSError: Could not op... | FAILED pybedtools/test/test_issues.py::test_issue_181 - OSError: Could not op... | FAILED pybedtools/test/test_issues.py::test_issue_258 - gzip.BadGzipFile: Not... | FAILED pybedtools/test/test_issues.py::test_issue_343 - UnicodeDecodeError: '... | =========== 14 failed, 491 passed, 2 deselected, 3 xfailed in 9.27s ============ | E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pybedtools/build; python3.11 -m pytest -k "not test_chromsizes" | dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.11" returned exit code 13 | make: *** [debian/rules:30: binary] Error 25 | dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 A full build log on riscv64 is available here: https://buildd.debian.org/status/fetch.php?pkg=python-pybedtools&arch=riscv64&ver=0.9.1-1%2Bb2&stamp=1713040255&raw=0 Full build logs on amd64 and arm64 are also available on reproducible builds: https://tests.reproducible-builds.org/debian/rbuild/unstable/amd64/python-pybedtools_0.9.1-1.rbuild.log.gz https://tests.reproducible-builds.org/debian/rbuild/unstable/arm64/python-pybedtools_0.9.1-1.rbuild.log.gz Regards Aurelien