Hi Lucas, thanks a lot for all your work on rebuilding the archive on different architectures. That's really appreciated.
In this specific case I wonder whether your build host has simply trouble initialising MPI given I find strings like MPI_ERRORS_ARE_FATAL Kind regards Andreas. Am Sat, Apr 20, 2024 at 03:14:31PM +0200 schrieb Lucas Nussbaum: > Source: r-cran-metamix > Version: 0.3-2 > Severity: serious > Justification: FTBFS > Tags: trixie sid ftbfs > User: lu...@debian.org > Usertags: ftbfs-20240420 ftbfs-trixie ftbfs-t64-armhf > > Hi, > > During a rebuild of all packages in sid, your package failed to build > on armhf. > > > Relevant part (hopefully): > > make[1]: Entering directory '/<<PKGBUILDDIR>>/src' > > make[1]: Leaving directory '/<<PKGBUILDDIR>>/src' > > installing to > > /<<PKGBUILDDIR>>/debian/r-cran-metamix/usr/lib/R/site-library/00LOCK-r-cran-metamix-0.3/00new/metaMix/libs > > ** R > > ** data > > *** moving datasets to lazyload DB > > ** inst > > ** byte-compile and prepare package for lazy loading > > -------------------------------------------------------------------------- > > Sorry! You were supposed to get help about: > > pmix_init:startup:internal-failure > > But I couldn't open the help file: > > /usr/share/pmix/help-pmix-runtime.txt: No such file or directory. > > Sorry! > > -------------------------------------------------------------------------- > > [ip-10-84-234-19:2164897] PMIX ERROR: NOT-FOUND in file > > ../../../../../../../../opal/mca/pmix/pmix3x/pmix/src/server/pmix_server.c > > at line 237 > > [ip-10-84-234-19:2164891] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to > > start a daemon on the local node in file > > ../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 716 > > [ip-10-84-234-19:2164891] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to > > start a daemon on the local node in file > > ../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 172 > > -------------------------------------------------------------------------- > > It looks like orte_init failed for some reason; your parallel process is > > likely to abort. There are many reasons that a parallel process can > > fail during orte_init; some of which are due to configuration or > > environment problems. This failure appears to be an internal failure; > > here's some additional information (which may only be relevant to an > > Open MPI developer): > > > > orte_ess_init failed > > --> Returned value Unable to start a daemon on the local node (-127) > > instead of ORTE_SUCCESS > > -------------------------------------------------------------------------- > > -------------------------------------------------------------------------- > > It looks like MPI_INIT failed for some reason; your parallel process is > > likely to abort. There are many reasons that a parallel process can > > fail during MPI_INIT; some of which are due to configuration or environment > > problems. This failure appears to be an internal failure; here's some > > additional information (which may only be relevant to an Open MPI > > developer): > > > > ompi_mpi_init: ompi_rte_init failed > > --> Returned "Unable to start a daemon on the local node" (-127) instead > > of "Success" (0) > > -------------------------------------------------------------------------- > > *** An error occurred in MPI_Init > > *** on a NULL communicator > > *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort, > > *** and potentially your MPI job) > > [ip-10-84-234-19:2164891] Local abort before MPI_INIT completed completed > > successfully, but am not able to aggregate error messages, and not able to > > guarantee that all other processes were killed! > > ERROR: lazy loading failed for package ‘metaMix’ > > * removing > > ‘/<<PKGBUILDDIR>>/debian/r-cran-metamix/usr/lib/R/site-library/metaMix’ > > dh_auto_install: error: R CMD INSTALL -l > > /<<PKGBUILDDIR>>/debian/r-cran-metamix/usr/lib/R/site-library --clean . > > "--built-timestamp='Sat, 21 Mar 2020 14:53:15 +0100'" returned exit code 1 > > make: *** [debian/rules:4: binary] Error 25 > > > The full build log is available from: > http://qa-logs.debian.net/2024/04/20/r-cran-metamix_0.3-2_unstable-armhf.log > > All bugs filed during this archive rebuild are listed at: > https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240420;users=lu...@debian.org > or: > https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240420&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results > > A list of current common problems and possible solutions is available at > http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! > > If you reassign this bug to another package, please mark it as 'affects'-ing > this package. See https://www.debian.org/Bugs/server-control#affects > > If you fail to reproduce this, please provide a build log and diff it with > mine > so that we can identify if something relevant changed in the meantime. > > _______________________________________________ > R-pkg-team mailing list > r-pkg-t...@alioth-lists.debian.net > https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/r-pkg-team -- https://fam-tille.de