Package: src:zarr Version: 2.17.2+ds-1 Severity: serious Tags: ftbfs
Dear maintainer: During a rebuild of all packages in unstable, your package failed to build: -------------------------------------------------------------------------------- [...] debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_zarr * Building wheel... running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/zarr copying zarr/hierarchy.py -> build/lib/zarr copying zarr/__init__.py -> build/lib/zarr copying zarr/storage.py -> build/lib/zarr copying zarr/meta_v1.py -> build/lib/zarr copying zarr/creation.py -> build/lib/zarr copying zarr/types.py -> build/lib/zarr copying zarr/util.py -> build/lib/zarr copying zarr/core.py -> build/lib/zarr copying zarr/indexing.py -> build/lib/zarr copying zarr/codecs.py -> build/lib/zarr copying zarr/convenience.py -> build/lib/zarr copying zarr/errors.py -> build/lib/zarr copying zarr/version.py -> build/lib/zarr copying zarr/attrs.py -> build/lib/zarr copying zarr/n5.py -> build/lib/zarr copying zarr/context.py -> build/lib/zarr copying zarr/sync.py -> build/lib/zarr copying zarr/meta.py -> build/lib/zarr creating build/lib/zarr/_storage copying zarr/_storage/__init__.py -> build/lib/zarr/_storage copying zarr/_storage/absstore.py -> build/lib/zarr/_storage copying zarr/_storage/v3.py -> build/lib/zarr/_storage copying zarr/_storage/store.py -> build/lib/zarr/_storage copying zarr/_storage/v3_storage_transformers.py -> build/lib/zarr/_storage creating build/lib/zarr/tests copying zarr/tests/test_sync.py -> build/lib/zarr/tests copying zarr/tests/__init__.py -> build/lib/zarr/tests copying zarr/tests/test_meta.py -> build/lib/zarr/tests copying zarr/tests/test_core.py -> build/lib/zarr/tests copying zarr/tests/test_dim_separator.py -> build/lib/zarr/tests copying zarr/tests/test_storage_v3.py -> build/lib/zarr/tests copying zarr/tests/test_convenience.py -> build/lib/zarr/tests copying zarr/tests/test_n5.py -> build/lib/zarr/tests copying zarr/tests/test_storage.py -> build/lib/zarr/tests copying zarr/tests/test_hierarchy.py -> build/lib/zarr/tests copying zarr/tests/util.py -> build/lib/zarr/tests copying zarr/tests/test_attrs.py -> build/lib/zarr/tests copying zarr/tests/test_creation.py -> build/lib/zarr/tests copying zarr/tests/conftest.py -> build/lib/zarr/tests copying zarr/tests/test_info.py -> build/lib/zarr/tests copying zarr/tests/test_filters.py -> build/lib/zarr/tests copying zarr/tests/test_util.py -> build/lib/zarr/tests copying zarr/tests/test_indexing.py -> build/lib/zarr/tests copying zarr/tests/test_meta_array.py -> build/lib/zarr/tests running egg_info creating zarr.egg-info writing zarr.egg-info/PKG-INFO writing dependency_links to zarr.egg-info/dependency_links.txt writing requirements to zarr.egg-info/requires.txt writing top-level names to zarr.egg-info/top_level.txt writing manifest file 'zarr.egg-info/SOURCES.txt' reading manifest file 'zarr.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'zarr.egg-info/SOURCES.txt' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/hierarchy.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/__init__.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/storage.py -> build/bdist.linux-x86_64/wheel/zarr creating build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_sync.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/__init__.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_meta.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_core.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_dim_separator.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_storage_v3.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_convenience.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_n5.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_storage.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_hierarchy.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/util.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_attrs.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_creation.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/conftest.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_info.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_filters.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_util.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_indexing.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_meta_array.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/meta_v1.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/creation.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/types.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/util.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/core.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/indexing.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/codecs.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/convenience.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/errors.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/version.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/attrs.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/n5.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/context.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/sync.py -> build/bdist.linux-x86_64/wheel/zarr creating build/bdist.linux-x86_64/wheel/zarr/_storage copying build/lib/zarr/_storage/__init__.py -> build/bdist.linux-x86_64/wheel/zarr/_storage copying build/lib/zarr/_storage/absstore.py -> build/bdist.linux-x86_64/wheel/zarr/_storage copying build/lib/zarr/_storage/v3.py -> build/bdist.linux-x86_64/wheel/zarr/_storage copying build/lib/zarr/_storage/store.py -> build/bdist.linux-x86_64/wheel/zarr/_storage copying build/lib/zarr/_storage/v3_storage_transformers.py -> build/bdist.linux-x86_64/wheel/zarr/_storage copying build/lib/zarr/meta.py -> build/bdist.linux-x86_64/wheel/zarr running install_egg_info Copying zarr.egg-info to build/bdist.linux-x86_64/wheel/zarr-2.17.2.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/zarr-2.17.2.dist-info/WHEEL creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_zarr/.tmp-mlcyrmch/zarr-2.17.2-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'zarr/__init__.py' adding 'zarr/attrs.py' adding 'zarr/codecs.py' adding 'zarr/context.py' adding 'zarr/convenience.py' adding 'zarr/core.py' adding 'zarr/creation.py' adding 'zarr/errors.py' adding 'zarr/hierarchy.py' adding 'zarr/indexing.py' adding 'zarr/meta.py' adding 'zarr/meta_v1.py' adding 'zarr/n5.py' adding 'zarr/storage.py' adding 'zarr/sync.py' adding 'zarr/types.py' adding 'zarr/util.py' adding 'zarr/version.py' adding 'zarr/_storage/__init__.py' adding 'zarr/_storage/absstore.py' adding 'zarr/_storage/store.py' adding 'zarr/_storage/v3.py' adding 'zarr/_storage/v3_storage_transformers.py' adding 'zarr/tests/__init__.py' adding 'zarr/tests/conftest.py' adding 'zarr/tests/test_attrs.py' adding 'zarr/tests/test_convenience.py' adding 'zarr/tests/test_core.py' adding 'zarr/tests/test_creation.py' adding 'zarr/tests/test_dim_separator.py' adding 'zarr/tests/test_filters.py' adding 'zarr/tests/test_hierarchy.py' adding 'zarr/tests/test_indexing.py' adding 'zarr/tests/test_info.py' adding 'zarr/tests/test_meta.py' adding 'zarr/tests/test_meta_array.py' adding 'zarr/tests/test_n5.py' adding 'zarr/tests/test_storage.py' adding 'zarr/tests/test_storage_v3.py' adding 'zarr/tests/test_sync.py' adding 'zarr/tests/test_util.py' adding 'zarr/tests/util.py' adding 'zarr-2.17.2.dist-info/LICENSE.txt' adding 'zarr-2.17.2.dist-info/METADATA' adding 'zarr-2.17.2.dist-info/WHEEL' adding 'zarr-2.17.2.dist-info/top_level.txt' adding 'zarr-2.17.2.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built zarr-2.17.2-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module I: pybuild plugin_pyproject:129: Building wheel for python3.11 with "build" module I: pybuild base:311: python3.11 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_zarr * Building wheel... running bdist_wheel running build running build_py running egg_info writing zarr.egg-info/PKG-INFO writing dependency_links to zarr.egg-info/dependency_links.txt writing requirements to zarr.egg-info/requires.txt writing top-level names to zarr.egg-info/top_level.txt reading manifest file 'zarr.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'zarr.egg-info/SOURCES.txt' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/hierarchy.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/__init__.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/storage.py -> build/bdist.linux-x86_64/wheel/zarr creating build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_sync.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/__init__.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_meta.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_core.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_dim_separator.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_storage_v3.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_convenience.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_n5.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_storage.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_hierarchy.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/util.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_attrs.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_creation.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/conftest.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_info.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_filters.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_util.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_indexing.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/tests/test_meta_array.py -> build/bdist.linux-x86_64/wheel/zarr/tests copying build/lib/zarr/meta_v1.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/creation.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/types.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/util.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/core.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/indexing.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/codecs.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/convenience.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/errors.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/version.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/attrs.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/n5.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/context.py -> build/bdist.linux-x86_64/wheel/zarr copying build/lib/zarr/sync.py -> build/bdist.linux-x86_64/wheel/zarr creating build/bdist.linux-x86_64/wheel/zarr/_storage copying build/lib/zarr/_storage/__init__.py -> build/bdist.linux-x86_64/wheel/zarr/_storage copying build/lib/zarr/_storage/absstore.py -> build/bdist.linux-x86_64/wheel/zarr/_storage copying build/lib/zarr/_storage/v3.py -> build/bdist.linux-x86_64/wheel/zarr/_storage copying build/lib/zarr/_storage/store.py -> build/bdist.linux-x86_64/wheel/zarr/_storage copying build/lib/zarr/_storage/v3_storage_transformers.py -> build/bdist.linux-x86_64/wheel/zarr/_storage copying build/lib/zarr/meta.py -> build/bdist.linux-x86_64/wheel/zarr running install_egg_info Copying zarr.egg-info to build/bdist.linux-x86_64/wheel/zarr-2.17.2.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/zarr-2.17.2.dist-info/WHEEL creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_zarr/.tmp-kh5frrdh/zarr-2.17.2-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'zarr/__init__.py' adding 'zarr/attrs.py' adding 'zarr/codecs.py' adding 'zarr/context.py' adding 'zarr/convenience.py' adding 'zarr/core.py' adding 'zarr/creation.py' adding 'zarr/errors.py' adding 'zarr/hierarchy.py' adding 'zarr/indexing.py' adding 'zarr/meta.py' adding 'zarr/meta_v1.py' adding 'zarr/n5.py' adding 'zarr/storage.py' adding 'zarr/sync.py' adding 'zarr/types.py' adding 'zarr/util.py' adding 'zarr/version.py' adding 'zarr/_storage/__init__.py' adding 'zarr/_storage/absstore.py' adding 'zarr/_storage/store.py' adding 'zarr/_storage/v3.py' adding 'zarr/_storage/v3_storage_transformers.py' adding 'zarr/tests/__init__.py' adding 'zarr/tests/conftest.py' adding 'zarr/tests/test_attrs.py' adding 'zarr/tests/test_convenience.py' adding 'zarr/tests/test_core.py' adding 'zarr/tests/test_creation.py' adding 'zarr/tests/test_dim_separator.py' adding 'zarr/tests/test_filters.py' adding 'zarr/tests/test_hierarchy.py' adding 'zarr/tests/test_indexing.py' adding 'zarr/tests/test_info.py' adding 'zarr/tests/test_meta.py' adding 'zarr/tests/test_meta_array.py' adding 'zarr/tests/test_n5.py' adding 'zarr/tests/test_storage.py' adding 'zarr/tests/test_storage_v3.py' adding 'zarr/tests/test_sync.py' adding 'zarr/tests/test_util.py' adding 'zarr/tests/util.py' adding 'zarr-2.17.2.dist-info/LICENSE.txt' adding 'zarr-2.17.2.dist-info/METADATA' adding 'zarr-2.17.2.dist-info/WHEEL' adding 'zarr-2.17.2.dist-info/top_level.txt' adding 'zarr-2.17.2.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built zarr-2.17.2-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.11 with "installer" module debian/rules execute_after_dh_auto_build-indep make[1]: Entering directory '/<<PKGBUILDDIR>>' I: pybuild base:311: echo /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_zarr/build cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_zarr/build && \ PYTHONPATH=. \ LC_ALL=C.UTF-8 LANGUAGE=C.UTF-8 \ sphinx-build -N -E -T -b html /<<PKGBUILDDIR>>/docs /<<PKGBUILDDIR>>/.pybuild/docs/html Running Sphinx v7.2.6 making output directory... done [autosummary] generating autosummary for: acknowledgments.rst, api.rst, api/attrs.rst, api/codecs.rst, api/convenience.rst, api/core.rst, api/creation.rst, api/hierarchy.rst, api/n5.rst, api/storage.rst, ..., getting_started.rst, index.rst, installation.rst, license.rst, release.rst, spec.rst, spec/v1.rst, spec/v2.rst, spec/v3.rst, tutorial.rst loading intersphinx inventory from https://docs.python.org/objects.inv... loading intersphinx inventory from https://numpy.org/doc/stable/objects.inv... loading intersphinx inventory from https://numcodecs.readthedocs.io/en/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f4a5c9c3690>: Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.python.org/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f4a5ddc42d0>: Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://numcodecs.readthedocs.io/en/stable/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='numcodecs.readthedocs.io', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f4a5f928810>: Failed to establish a new connection: [Errno 111] Connection refused'))) [automodsumm] api/core.rst: found 1 automodsumm entries to generate building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 23 source files that are out of date updating environment: [new config] 24 added, 0 changed, 0 removed [2Kreading sources... [ 4%] _autoapi/zarr.core.Array [2Kreading sources... [ 8%] acknowledgments [2Kreading sources... [ 12%] api [2Kreading sources... [ 17%] api/attrs [2Kreading sources... [ 21%] api/codecs [2Kreading sources... [ 25%] api/convenience [2Kreading sources... [ 29%] api/core [2Kreading sources... [ 33%] api/creation [2Kreading sources... [ 38%] api/hierarchy [2Kreading sources... [ 42%] api/n5 [2Kreading sources... [ 46%] api/storage [2Kreading sources... [ 50%] api/sync [2Kreading sources... [ 54%] api/v3 [2Kreading sources... [ 58%] contributing [2Kreading sources... [ 62%] getting_started [2Kreading sources... [ 67%] index [2Kreading sources... [ 71%] installation [2Kreading sources... [ 75%] license [2Kreading sources... [ 79%] release [2Kreading sources... [ 83%] spec [2Kreading sources... [ 88%] spec/v1 [2Kreading sources... [ 92%] spec/v2 [2Kreading sources... [ 96%] spec/v3 [2Kreading sources... [100%] tutorial looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... done copying extra files... done done [2Kwriting output... [ 4%] _autoapi/zarr.core.Array [2Kwriting output... [ 8%] acknowledgments [2Kwriting output... [ 12%] api [2Kwriting output... [ 17%] api/attrs [2Kwriting output... [ 21%] api/codecs [2Kwriting output... [ 25%] api/convenience [2Kwriting output... [ 29%] api/core [2Kwriting output... [ 33%] api/creation [2Kwriting output... [ 38%] api/hierarchy [2Kwriting output... [ 42%] api/n5 [2Kwriting output... [ 46%] api/storage [2Kwriting output... [ 50%] api/sync [2Kwriting output... [ 54%] api/v3 [2Kwriting output... [ 58%] contributing [2Kwriting output... [ 62%] getting_started [2Kwriting output... [ 67%] index [2Kwriting output... [ 71%] installation [2Kwriting output... [ 75%] license [2Kwriting output... [ 79%] release [2Kwriting output... [ 83%] spec [2Kwriting output... [ 88%] spec/v1 [2Kwriting output... [ 92%] spec/v2 [2Kwriting output... [ 96%] spec/v3 [2Kwriting output... [100%] tutorial generating indices... genindex py-modindex done [2Khighlighting module code... [ 8%] zarr._storage.absstore [2Khighlighting module code... [ 17%] zarr._storage.store [2Khighlighting module code... [ 25%] zarr._storage.v3 [2Khighlighting module code... [ 33%] zarr._storage.v3_storage_transformers [2Khighlighting module code... [ 42%] zarr.attrs [2Khighlighting module code... [ 50%] zarr.convenience [2Khighlighting module code... [ 58%] zarr.core [2Khighlighting module code... [ 67%] zarr.creation [2Khighlighting module code... [ 75%] zarr.hierarchy [2Khighlighting module code... [ 83%] zarr.n5 [2Khighlighting module code... [ 92%] zarr.storage [2Khighlighting module code... [100%] zarr.sync writing additional pages... search done [2Kcopying images... [ 25%] _static/index_getting_started.svg [2Kcopying images... [ 50%] _static/index_user_guide.svg [2Kcopying images... [ 75%] _static/index_api.svg [2Kcopying images... [100%] _static/index_contribute.svg dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 3 warnings. The HTML pages are in ../../docs/html. rm -rf /<<PKGBUILDDIR>>/.pybuild/docs/html/.doctrees make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_zarr/build; python3.12 -m pytest -k "not test_hierarchy and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853" --pyargs zarr ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-8.1.1, pluggy-1.5.0 rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_zarr/build configfile: pyproject.toml plugins: timeout-2.3.1, doctestplus-1.2.1 collected 5166 items / 763 deselected / 4403 selected zarr/tests/test_attrs.py .................. [ 0%] zarr/tests/test_convenience.py .....ss...................ssssssss.s..... 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[ 97%] ........................................................................ [ 99%] ................ [ 99%] zarr/tests/test_util.py .................. [100%] =================================== FAILURES =================================== ___________________________ TestFSStore.test_complex ___________________________ self = <zarr.tests.test_storage.TestFSStore object at 0x7f335c3ba8d0> def test_complex(self): path1 = tempfile.mkdtemp() path2 = tempfile.mkdtemp() store = self.create_store( path="simplecache::file://" + path1, simplecache={"same_names": True, "cache_storage": path2}, ) assert not store assert not os.listdir(path1) assert not os.listdir(path2) store[self.root + "foo"] = b"hello" assert "foo" in os.listdir(str(path1) + "/" + self.root) assert self.root + "foo" in store
assert not os.listdir(str(path2))
E AssertionError: assert not ['foo'] E + where ['foo'] = <built-in function listdir>('/tmp/tmpmlzejl8z') E + where <built-in function listdir> = os.listdir E + and '/tmp/tmpmlzejl8z' = str('/tmp/tmpmlzejl8z') zarr/tests/test_storage.py:1155: AssertionError __________________________ TestN5FSStore.test_complex __________________________ self = <zarr.tests.test_storage.TestN5FSStore object at 0x7f335c0e0920> def test_complex(self): path1 = tempfile.mkdtemp() path2 = tempfile.mkdtemp() store = self.create_store( path="simplecache::file://" + path1, simplecache={"same_names": True, "cache_storage": path2}, ) assert not store assert not os.listdir(path1) assert not os.listdir(path2) store[self.root + "foo"] = b"hello" assert "foo" in os.listdir(str(path1) + "/" + self.root) assert self.root + "foo" in store
assert not os.listdir(str(path2))
E AssertionError: assert not ['foo'] E + where ['foo'] = <built-in function listdir>('/tmp/tmpg09d1c03') E + where <built-in function listdir> = os.listdir E + and '/tmp/tmpg09d1c03' = str('/tmp/tmpg09d1c03') zarr/tests/test_storage.py:1155: AssertionError =============================== warnings summary =============================== zarr/tests/test_storage.py::TestZipStore::test_store_and_retrieve_ndarray /usr/lib/python3.12/zipfile/__init__.py:1607: UserWarning: Duplicate name: 'foo' return self._open_to_write(zinfo, force_zip64=force_zip64) zarr/tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem zarr/tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem zarr/tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append zarr/tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append zarr/tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group zarr/tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group zarr/tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group zarr/tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group /usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning: This process (pid=287649) is multi-threaded, use of fork() may lead to deadlocks in the child. self.pid = os.fork() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 10 durations ============================= 4.33s call zarr/tests/test_indexing.py::test_set_orthogonal_selection_3d 1.54s call zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_islice 1.53s call zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_iter 1.52s call zarr/tests/test_storage.py::test_format_compatibility 1.36s call zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d 1.10s call zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_array_order 1.09s call zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d 1.08s call zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d_axis 0.94s call zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont 0.84s call zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_dtypes =========================== short test summary info ============================ FAILED zarr/tests/test_storage.py::TestFSStore::test_complex - AssertionError... FAILED zarr/tests/test_storage.py::TestN5FSStore::test_complex - AssertionErr... = 2 failed, 2222 passed, 2175 skipped, 763 deselected, 4 xfailed, 9 warnings in 51.81s = E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_zarr/build; python3.12 -m pytest -k "not test_hierarchy and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853" --pyargs zarr I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_zarr/build; python3.11 -m pytest -k "not test_hierarchy and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853" --pyargs zarr ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-8.1.1, pluggy-1.5.0 rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_zarr/build configfile: pyproject.toml plugins: timeout-2.3.1, doctestplus-1.2.1 collected 5166 items / 763 deselected / 4403 selected zarr/tests/test_attrs.py .................. 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[ 97%] ........................................................................ [ 99%] ................ [ 99%] zarr/tests/test_util.py .................. [100%] =================================== FAILURES =================================== ___________________________ TestFSStore.test_complex ___________________________ self = <zarr.tests.test_storage.TestFSStore object at 0x7ffbc36aea90> def test_complex(self): path1 = tempfile.mkdtemp() path2 = tempfile.mkdtemp() store = self.create_store( path="simplecache::file://" + path1, simplecache={"same_names": True, "cache_storage": path2}, ) assert not store assert not os.listdir(path1) assert not os.listdir(path2) store[self.root + "foo"] = b"hello" assert "foo" in os.listdir(str(path1) + "/" + self.root) assert self.root + "foo" in store
assert not os.listdir(str(path2))
E AssertionError: assert not ['foo'] E + where ['foo'] = <built-in function listdir>('/tmp/tmpb57pytp0') E + where <built-in function listdir> = os.listdir E + and '/tmp/tmpb57pytp0' = str('/tmp/tmpb57pytp0') zarr/tests/test_storage.py:1155: AssertionError __________________________ TestN5FSStore.test_complex __________________________ self = <zarr.tests.test_storage.TestN5FSStore object at 0x7ffbc355d150> def test_complex(self): path1 = tempfile.mkdtemp() path2 = tempfile.mkdtemp() store = self.create_store( path="simplecache::file://" + path1, simplecache={"same_names": True, "cache_storage": path2}, ) assert not store assert not os.listdir(path1) assert not os.listdir(path2) store[self.root + "foo"] = b"hello" assert "foo" in os.listdir(str(path1) + "/" + self.root) assert self.root + "foo" in store
assert not os.listdir(str(path2))
E AssertionError: assert not ['foo'] E + where ['foo'] = <built-in function listdir>('/tmp/tmpjnj_wxks') E + where <built-in function listdir> = os.listdir E + and '/tmp/tmpjnj_wxks' = str('/tmp/tmpjnj_wxks') zarr/tests/test_storage.py:1155: AssertionError =============================== warnings summary =============================== zarr/tests/test_storage.py::TestZipStore::test_store_and_retrieve_ndarray /usr/lib/python3.11/zipfile.py:1566: UserWarning: Duplicate name: 'foo' return self._open_to_write(zinfo, force_zip64=force_zip64) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 10 durations ============================= 4.53s call zarr/tests/test_indexing.py::test_set_orthogonal_selection_3d 1.63s call zarr/tests/test_storage.py::test_format_compatibility 1.63s call zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_iter 1.45s call zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_islice 1.13s call zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d 1.09s call zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_array_order 1.08s call zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d_axis 1.08s call zarr/tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d 0.90s call zarr/tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont 0.75s call zarr/tests/test_indexing.py::test_set_orthogonal_selection_2d =========================== short test summary info ============================ FAILED zarr/tests/test_storage.py::TestFSStore::test_complex - AssertionError... FAILED zarr/tests/test_storage.py::TestN5FSStore::test_complex - AssertionErr... = 2 failed, 2222 passed, 2175 skipped, 763 deselected, 4 xfailed, 1 warning in 52.19s = E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_zarr/build; python3.11 -m pytest -k "not test_hierarchy and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853" --pyargs zarr dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.11" returned exit code 13 make: *** [debian/rules:27: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- The above is just how the build ends and not necessarily the most relevant part. If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202404/ About the archive rebuild: The build was made on virtual machines of type m6a.large from AWS, using sbuild and a reduced chroot with only build-essential packages. If you could not reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks.