Source: r-bioc-s4vectors Version: 0.40.2+dfsg-1 Severity: serious X-Debbugs-Cc: Dirk Eddelbuettel <e...@debian.org> User: debian...@lists.debian.org Usertags: regression
Hi Maintainer r-bioc-s4vectors' autopkgtest regresses when tested with r-base 4.4.0 [1]. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://ci.debian.net/packages/r/r-bioc-s4vectors/testing/amd64/ 125s > S4Vectors:::.test() 129s Timing stopped at: 0.009 0 0.009 129s Error in var(x) : is.atomic(y) is not TRUE 129s In addition: Warning messages: 129s 1: In combineUniqueCols(X, Y, Z, use.names = FALSE) : 129s different values in multiple instances of column 'dup', ignoring this 129s column in DFrame 2 129s 2: In combineUniqueCols(X, Y, Z) : 129s different values for shared rows in multiple instances of column 'dup', 129s ignoring this column in DFrame 2 129s 3: In combineUniqueCols(x, y2) : 129s different values for shared rows in multiple instances of column 'X', 129s ignoring this column in DFrame 2 130s Loading required package: GenomeInfoDb 132s 132s 132s RUNIT TEST PROTOCOL -- Thu May 9 22:12:10 2024 132s *********************************************** 132s Number of test functions: 74 132s Number of errors: 1 132s Number of failures: 0 132s 132s 132s 1 Test Suite : 132s S4Vectors RUnit Tests - 74 test functions, 1 error, 0 failures 132s ERROR in test_Rle_numerical: Error in var(x) : is.atomic(y) is not TRUE 132s 132s Test files with failing tests 132s 132s test_Rle-utils.R 132s test_Rle_numerical 132s 132s 132s Error in BiocGenerics:::testPackage("S4Vectors") : 132s unit tests failed for package S4Vectors 132s Calls: <Anonymous> -> <Anonymous> 132s Execution halted
