Package: src:mdanalysis Version: 2.5.0+dfsg1-2 Severity: serious Tags: ftbfs
Dear maintainer: During a rebuild of all packages in unstable, your package failed to build: -------------------------------------------------------------------------------- [...] debian/rules build dh build --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mdanalysis * Building wheel... performance hint: MDAnalysis/lib/c_distances.pyx:301:5: Exception check on '_minimum_image_orthogonal' will always require the GIL to be acquired. Possible solutions: 1. Declare '_minimum_image_orthogonal' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '_minimum_image_orthogonal' to allow an error code to be returned. performance hint: MDAnalysis/lib/c_distances.pyx:328:5: Exception check on '_minimum_image_triclinic' will always require the GIL to be acquired. [... snipped ...] copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/contacts.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/data copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/data/filenames.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/data copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/data/janin_ref_data.npy -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/data copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/data/rama_ref_data.npy -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/data copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/data/__init__.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/data copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/polymer.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/waterdynamics.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/lineardensity.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/atomicdistances.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/align.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/rms.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/bat.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/nucleicacids.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hydrogenbonds copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hydrogenbonds copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hydrogenbonds copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hydrogenbonds copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hydrogenbonds copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/diffusionmap.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/legacy copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/legacy/x3dna.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/legacy copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/legacy/__init__.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/legacy copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/gnm.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/msd.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/leaflet.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/density.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/psa.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/dihedrals.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hole2 copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hole2/hole.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hole2 copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hole2/templates.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hole2 copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hole2/utils.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hole2 copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hole2/__init__.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hole2 creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hbonds copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hbonds copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hbonds/__init__.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hbonds copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/distances.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/__init__.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/auxiliary copying build/lib.linux-x86_64-cpython-311/MDAnalysis/auxiliary/base.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/auxiliary copying build/lib.linux-x86_64-cpython-311/MDAnalysis/auxiliary/XVG.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/auxiliary copying build/lib.linux-x86_64-cpython-311/MDAnalysis/auxiliary/EDR.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/auxiliary copying build/lib.linux-x86_64-cpython-311/MDAnalysis/auxiliary/core.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/auxiliary copying build/lib.linux-x86_64-cpython-311/MDAnalysis/auxiliary/__init__.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/auxiliary creating build/bdist.linux-x86_64/wheel/MDAnalysis/core copying build/lib.linux-x86_64-cpython-311/MDAnalysis/core/topologyattrs.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/core copying build/lib.linux-x86_64-cpython-311/MDAnalysis/core/topology.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/core copying build/lib.linux-x86_64-cpython-311/MDAnalysis/core/universe.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/core copying build/lib.linux-x86_64-cpython-311/MDAnalysis/core/_get_readers.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/core copying build/lib.linux-x86_64-cpython-311/MDAnalysis/core/topologyobjects.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/core copying build/lib.linux-x86_64-cpython-311/MDAnalysis/core/selection.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/core copying build/lib.linux-x86_64-cpython-311/MDAnalysis/core/accessors.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/core copying build/lib.linux-x86_64-cpython-311/MDAnalysis/core/groups.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/core copying build/lib.linux-x86_64-cpython-311/MDAnalysis/core/__init__.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/core creating build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/GSDParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/base.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/MinimalParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/TXYZParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/PSFParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/GROParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology creating build/bdist.linux-x86_64/wheel/MDAnalysis/topology/tpr copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/tpr/utils.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology/tpr copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/tpr/obj.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology/tpr copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/tpr/__init__.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology/tpr copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/tpr/setting.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology/tpr copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/ExtendedPDBParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/TPRParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/DMSParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/ParmEdParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/PQRParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/PDBQTParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/tables.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/MMTFParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/DLPolyParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/guessers.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/GMSParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/ITPParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/XYZParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/CRDParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/TOPParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/FHIAIMSParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/LAMMPSParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/core.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/PDBParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/MOL2Parser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/__init__.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/HoomdXMLParser.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/topology creating build/bdist.linux-x86_64/wheel/MDAnalysis/tests copying build/lib.linux-x86_64-cpython-311/MDAnalysis/tests/datafiles.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/tests copying build/lib.linux-x86_64-cpython-311/MDAnalysis/tests/__init__.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/tests copying build/lib.linux-x86_64-cpython-311/MDAnalysis/exceptions.py -> build/bdist.linux-x86_64/wheel/MDAnalysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/mdamath.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/_cutil.cpp -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/cython_util.pxd -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/cython_util.c -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/libmdaxdr.pyx -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/libmdaxdr.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/libmdaxdr.c -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/src copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/src copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/src/xdrfile.c -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/src copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/src/trr_seek.c -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/src copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/src/xtc_seek.c -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/src copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/src copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/libmdaxdr.pxd -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/libdcd.pyx -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/libdcd.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/cython_util.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/cython_util.pyx -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/libdcd.pxd -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/libdcd.c -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/__init__.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/include/xdrfile.h -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/include/fastio.h -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/include/endianswap.h -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/include/xtc_seek.h -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/include/readdcd.h -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/include/trr_seek.h -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/correlations.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/nsgrid.pyx -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/_transformations.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/util.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/src creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/src/transformations copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/src/transformations/LICENCE -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/src/transformations copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/src/transformations/transformations.c -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/src/transformations copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/src/transformations/AUTHOR -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/src/transformations copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/NeighborSearch.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/transformations.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/c_distances_openmp.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/_augment.cpp -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/c_distances.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/nsgrid.cpp -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/libmdanalysis copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/libmdanalysis copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/c_distances_openmp.pyx -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/pkdtree.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/nsgrid.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/c_distances.pyx -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/_cutil.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/picklable_file_io.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/c_distances_openmp.c -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/_cutil.pyx -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/_augment.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/qcprot.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/qcprot.c -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/_cutil.pxd -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/_distopia.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/log.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/c_distances.c -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/distances.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/qcprot.pyx -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/__init__.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/_augment.pyx -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/include copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/include/calc_distances.h -> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/include creating build/bdist.linux-x86_64/wheel/MDAnalysis/visualization copying build/lib.linux-x86_64-cpython-311/MDAnalysis/visualization/streamlines.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/visualization copying build/lib.linux-x86_64-cpython-311/MDAnalysis/visualization/streamlines_3D.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/visualization copying build/lib.linux-x86_64-cpython-311/MDAnalysis/visualization/__init__.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/visualization copying build/lib.linux-x86_64-cpython-311/MDAnalysis/authors.py -> build/bdist.linux-x86_64/wheel/MDAnalysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/XYZ.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/DLPoly.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/PQR.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/base.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/timestep.pyx -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/DCD.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/XTC.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/chemfiles.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/INPCRD.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/PDBQT.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/MMTF.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/NAMDBIN.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/LAMMPS.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/timestep.pxd -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/timestep.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/GSD.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/chain.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/DMS.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/memory.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/TRR.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/ParmEd.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/null.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/TRJ.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/CRD.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/MOL2.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/timestep.cpp -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/H5MD.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/TRZ.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/PDB.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/XDR.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/GMS.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/core.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/FHIAIMS.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/__init__.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/TXYZ.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/TNG.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/GRO.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates copying build/lib.linux-x86_64-cpython-311/MDAnalysis/version.py -> build/bdist.linux-x86_64/wheel/MDAnalysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-311/MDAnalysis/transformations/boxdimensions.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-311/MDAnalysis/transformations/positionaveraging.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-311/MDAnalysis/transformations/translate.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-311/MDAnalysis/transformations/base.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-311/MDAnalysis/transformations/fit.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-311/MDAnalysis/transformations/rotate.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-311/MDAnalysis/transformations/nojump.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-311/MDAnalysis/transformations/__init__.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-311/MDAnalysis/transformations/wrap.py -> build/bdist.linux-x86_64/wheel/MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-311/MDAnalysis/__init__.py -> build/bdist.linux-x86_64/wheel/MDAnalysis running install_egg_info Copying MDAnalysis.egg-info to build/bdist.linux-x86_64/wheel/MDAnalysis-2.5.0.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/MDAnalysis-2.5.0.dist-info/WHEEL creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_mdanalysis/.tmp-m5bzbqa1/MDAnalysis-2.5.0-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'MDAnalysis/__init__.py' adding 'MDAnalysis/authors.py' adding 'MDAnalysis/due.py' adding 'MDAnalysis/exceptions.py' adding 'MDAnalysis/units.py' adding 'MDAnalysis/version.py' adding 'MDAnalysis/analysis/__init__.py' adding 'MDAnalysis/analysis/align.py' adding 'MDAnalysis/analysis/atomicdistances.py' adding 'MDAnalysis/analysis/base.py' adding 'MDAnalysis/analysis/bat.py' adding 'MDAnalysis/analysis/contacts.py' adding 'MDAnalysis/analysis/density.py' adding 'MDAnalysis/analysis/dielectric.py' adding 'MDAnalysis/analysis/diffusionmap.py' adding 'MDAnalysis/analysis/dihedrals.py' adding 'MDAnalysis/analysis/distances.py' adding 'MDAnalysis/analysis/gnm.py' adding 'MDAnalysis/analysis/helix_analysis.py' adding 'MDAnalysis/analysis/leaflet.py' adding 'MDAnalysis/analysis/lineardensity.py' adding 'MDAnalysis/analysis/msd.py' adding 'MDAnalysis/analysis/nucleicacids.py' adding 'MDAnalysis/analysis/nuclinfo.py' adding 'MDAnalysis/analysis/pca.py' adding 'MDAnalysis/analysis/polymer.py' adding 'MDAnalysis/analysis/psa.py' adding 'MDAnalysis/analysis/rdf.py' adding 'MDAnalysis/analysis/rms.py' adding 'MDAnalysis/analysis/waterdynamics.py' adding 'MDAnalysis/analysis/data/__init__.py' adding 'MDAnalysis/analysis/data/filenames.py' adding 'MDAnalysis/analysis/data/janin_ref_data.npy' adding 'MDAnalysis/analysis/data/rama_ref_data.npy' adding 'MDAnalysis/analysis/encore/__init__.py' adding 'MDAnalysis/analysis/encore/bootstrap.py' adding 'MDAnalysis/analysis/encore/confdistmatrix.py' adding 'MDAnalysis/analysis/encore/covariance.py' adding 'MDAnalysis/analysis/encore/cutils.c' adding 'MDAnalysis/analysis/encore/cutils.cpython-311-x86_64-linux-gnu.so' adding 'MDAnalysis/analysis/encore/cutils.pyx' adding 'MDAnalysis/analysis/encore/similarity.py' adding 'MDAnalysis/analysis/encore/utils.py' adding 'MDAnalysis/analysis/encore/clustering/ClusterCollection.py' adding 'MDAnalysis/analysis/encore/clustering/ClusteringMethod.py' adding 'MDAnalysis/analysis/encore/clustering/__init__.py' adding 'MDAnalysis/analysis/encore/clustering/affinityprop.c' adding 'MDAnalysis/analysis/encore/clustering/affinityprop.cpython-311-x86_64-linux-gnu.so' adding 'MDAnalysis/analysis/encore/clustering/affinityprop.pyx' adding 'MDAnalysis/analysis/encore/clustering/cluster.py' adding 'MDAnalysis/analysis/encore/clustering/include/ap.h' adding 'MDAnalysis/analysis/encore/clustering/src/ap.c' adding 'MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py' adding 'MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py' adding 'MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py' adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c' adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-311-x86_64-linux-gnu.so' adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx' adding 'MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h' adding 'MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c' adding 'MDAnalysis/analysis/hbonds/__init__.py' adding 'MDAnalysis/analysis/hbonds/hbond_autocorrel.py' adding 'MDAnalysis/analysis/hole2/__init__.py' adding 'MDAnalysis/analysis/hole2/hole.py' adding 'MDAnalysis/analysis/hole2/templates.py' adding 'MDAnalysis/analysis/hole2/utils.py' adding 'MDAnalysis/analysis/hydrogenbonds/__init__.py' adding 'MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py' adding 'MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py' adding 'MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py' adding 'MDAnalysis/analysis/legacy/__init__.py' adding 'MDAnalysis/analysis/legacy/x3dna.py' adding 'MDAnalysis/auxiliary/EDR.py' adding 'MDAnalysis/auxiliary/XVG.py' adding 'MDAnalysis/auxiliary/__init__.py' adding 'MDAnalysis/auxiliary/base.py' adding 'MDAnalysis/auxiliary/core.py' adding 'MDAnalysis/converters/OpenMM.py' adding 'MDAnalysis/converters/OpenMMParser.py' adding 'MDAnalysis/converters/ParmEd.py' adding 'MDAnalysis/converters/ParmEdParser.py' adding 'MDAnalysis/converters/RDKit.py' adding 'MDAnalysis/converters/RDKitParser.py' adding 'MDAnalysis/converters/__init__.py' adding 'MDAnalysis/coordinates/CRD.py' adding 'MDAnalysis/coordinates/DCD.py' adding 'MDAnalysis/coordinates/DLPoly.py' adding 'MDAnalysis/coordinates/DMS.py' adding 'MDAnalysis/coordinates/FHIAIMS.py' adding 'MDAnalysis/coordinates/GMS.py' adding 'MDAnalysis/coordinates/GRO.py' adding 'MDAnalysis/coordinates/GSD.py' adding 'MDAnalysis/coordinates/H5MD.py' adding 'MDAnalysis/coordinates/INPCRD.py' adding 'MDAnalysis/coordinates/LAMMPS.py' adding 'MDAnalysis/coordinates/MMTF.py' adding 'MDAnalysis/coordinates/MOL2.py' adding 'MDAnalysis/coordinates/NAMDBIN.py' adding 'MDAnalysis/coordinates/PDB.py' adding 'MDAnalysis/coordinates/PDBQT.py' adding 'MDAnalysis/coordinates/PQR.py' adding 'MDAnalysis/coordinates/ParmEd.py' adding 'MDAnalysis/coordinates/TNG.py' adding 'MDAnalysis/coordinates/TRJ.py' adding 'MDAnalysis/coordinates/TRR.py' adding 'MDAnalysis/coordinates/TRZ.py' adding 'MDAnalysis/coordinates/TXYZ.py' adding 'MDAnalysis/coordinates/XDR.py' adding 'MDAnalysis/coordinates/XTC.py' adding 'MDAnalysis/coordinates/XYZ.py' adding 'MDAnalysis/coordinates/__init__.py' adding 'MDAnalysis/coordinates/base.py' adding 'MDAnalysis/coordinates/chain.py' adding 'MDAnalysis/coordinates/chemfiles.py' adding 'MDAnalysis/coordinates/core.py' adding 'MDAnalysis/coordinates/memory.py' adding 'MDAnalysis/coordinates/null.py' adding 'MDAnalysis/coordinates/timestep.cpp' adding 'MDAnalysis/coordinates/timestep.cpython-311-x86_64-linux-gnu.so' adding 'MDAnalysis/coordinates/timestep.pxd' adding 'MDAnalysis/coordinates/timestep.pyx' adding 'MDAnalysis/core/__init__.py' adding 'MDAnalysis/core/_get_readers.py' adding 'MDAnalysis/core/accessors.py' adding 'MDAnalysis/core/groups.py' adding 'MDAnalysis/core/selection.py' adding 'MDAnalysis/core/topology.py' adding 'MDAnalysis/core/topologyattrs.py' adding 'MDAnalysis/core/topologyobjects.py' adding 'MDAnalysis/core/universe.py' adding 'MDAnalysis/lib/NeighborSearch.py' adding 'MDAnalysis/lib/__init__.py' adding 'MDAnalysis/lib/_augment.cpp' adding 'MDAnalysis/lib/_augment.cpython-311-x86_64-linux-gnu.so' adding 'MDAnalysis/lib/_augment.pyx' adding 'MDAnalysis/lib/_cutil.cpp' adding 'MDAnalysis/lib/_cutil.cpython-311-x86_64-linux-gnu.so' adding 'MDAnalysis/lib/_cutil.pxd' adding 'MDAnalysis/lib/_cutil.pyx' adding 'MDAnalysis/lib/_distopia.py' adding 'MDAnalysis/lib/_transformations.cpython-311-x86_64-linux-gnu.so' adding 'MDAnalysis/lib/c_distances.c' adding 'MDAnalysis/lib/c_distances.cpython-311-x86_64-linux-gnu.so' adding 'MDAnalysis/lib/c_distances.pyx' adding 'MDAnalysis/lib/c_distances_openmp.c' adding 'MDAnalysis/lib/c_distances_openmp.cpython-311-x86_64-linux-gnu.so' adding 'MDAnalysis/lib/c_distances_openmp.pyx' adding 'MDAnalysis/lib/correlations.py' adding 'MDAnalysis/lib/distances.py' adding 'MDAnalysis/lib/log.py' adding 'MDAnalysis/lib/mdamath.py' adding 'MDAnalysis/lib/nsgrid.cpp' adding 'MDAnalysis/lib/nsgrid.cpython-311-x86_64-linux-gnu.so' adding 'MDAnalysis/lib/nsgrid.pyx' adding 'MDAnalysis/lib/picklable_file_io.py' adding 'MDAnalysis/lib/pkdtree.py' adding 'MDAnalysis/lib/qcprot.c' adding 'MDAnalysis/lib/qcprot.cpython-311-x86_64-linux-gnu.so' adding 'MDAnalysis/lib/qcprot.pyx' adding 'MDAnalysis/lib/transformations.py' adding 'MDAnalysis/lib/util.py' adding 'MDAnalysis/lib/formats/__init__.py' adding 'MDAnalysis/lib/formats/cython_util.c' adding 'MDAnalysis/lib/formats/cython_util.cpython-311-x86_64-linux-gnu.so' adding 'MDAnalysis/lib/formats/cython_util.pxd' adding 'MDAnalysis/lib/formats/cython_util.pyx' adding 'MDAnalysis/lib/formats/libdcd.c' adding 'MDAnalysis/lib/formats/libdcd.cpython-311-x86_64-linux-gnu.so' adding 'MDAnalysis/lib/formats/libdcd.pxd' adding 'MDAnalysis/lib/formats/libdcd.pyx' adding 'MDAnalysis/lib/formats/libmdaxdr.c' adding 'MDAnalysis/lib/formats/libmdaxdr.cpython-311-x86_64-linux-gnu.so' adding 'MDAnalysis/lib/formats/libmdaxdr.pxd' adding 'MDAnalysis/lib/formats/libmdaxdr.pyx' adding 'MDAnalysis/lib/formats/include/endianswap.h' adding 'MDAnalysis/lib/formats/include/fastio.h' adding 'MDAnalysis/lib/formats/include/readdcd.h' adding 'MDAnalysis/lib/formats/include/trr_seek.h' adding 'MDAnalysis/lib/formats/include/xdrfile.h' adding 'MDAnalysis/lib/formats/include/xdrfile_trr.h' adding 'MDAnalysis/lib/formats/include/xdrfile_xtc.h' adding 'MDAnalysis/lib/formats/include/xtc_seek.h' adding 'MDAnalysis/lib/formats/src/trr_seek.c' adding 'MDAnalysis/lib/formats/src/xdrfile.c' adding 'MDAnalysis/lib/formats/src/xdrfile_trr.c' adding 'MDAnalysis/lib/formats/src/xdrfile_xtc.c' adding 'MDAnalysis/lib/formats/src/xtc_seek.c' adding 'MDAnalysis/lib/include/calc_distances.h' adding 'MDAnalysis/lib/libmdanalysis/__init__.pxd' adding 'MDAnalysis/lib/src/transformations/AUTHOR' adding 'MDAnalysis/lib/src/transformations/LICENCE' adding 'MDAnalysis/lib/src/transformations/transformations.c' adding 'MDAnalysis/selections/__init__.py' adding 'MDAnalysis/selections/base.py' adding 'MDAnalysis/selections/charmm.py' adding 'MDAnalysis/selections/gromacs.py' adding 'MDAnalysis/selections/jmol.py' adding 'MDAnalysis/selections/pymol.py' adding 'MDAnalysis/selections/vmd.py' adding 'MDAnalysis/tests/__init__.py' adding 'MDAnalysis/tests/datafiles.py' adding 'MDAnalysis/topology/CRDParser.py' adding 'MDAnalysis/topology/DLPolyParser.py' adding 'MDAnalysis/topology/DMSParser.py' adding 'MDAnalysis/topology/ExtendedPDBParser.py' adding 'MDAnalysis/topology/FHIAIMSParser.py' adding 'MDAnalysis/topology/GMSParser.py' adding 'MDAnalysis/topology/GROParser.py' adding 'MDAnalysis/topology/GSDParser.py' adding 'MDAnalysis/topology/HoomdXMLParser.py' adding 'MDAnalysis/topology/ITPParser.py' adding 'MDAnalysis/topology/LAMMPSParser.py' adding 'MDAnalysis/topology/MMTFParser.py' adding 'MDAnalysis/topology/MOL2Parser.py' adding 'MDAnalysis/topology/MinimalParser.py' adding 'MDAnalysis/topology/PDBParser.py' adding 'MDAnalysis/topology/PDBQTParser.py' adding 'MDAnalysis/topology/PQRParser.py' adding 'MDAnalysis/topology/PSFParser.py' adding 'MDAnalysis/topology/ParmEdParser.py' adding 'MDAnalysis/topology/TOPParser.py' adding 'MDAnalysis/topology/TPRParser.py' adding 'MDAnalysis/topology/TXYZParser.py' adding 'MDAnalysis/topology/XYZParser.py' adding 'MDAnalysis/topology/__init__.py' adding 'MDAnalysis/topology/base.py' adding 'MDAnalysis/topology/core.py' adding 'MDAnalysis/topology/guessers.py' adding 'MDAnalysis/topology/tables.py' adding 'MDAnalysis/topology/tpr/__init__.py' adding 'MDAnalysis/topology/tpr/obj.py' adding 'MDAnalysis/topology/tpr/setting.py' adding 'MDAnalysis/topology/tpr/utils.py' adding 'MDAnalysis/transformations/__init__.py' adding 'MDAnalysis/transformations/base.py' adding 'MDAnalysis/transformations/boxdimensions.py' adding 'MDAnalysis/transformations/fit.py' adding 'MDAnalysis/transformations/nojump.py' adding 'MDAnalysis/transformations/positionaveraging.py' adding 'MDAnalysis/transformations/rotate.py' adding 'MDAnalysis/transformations/translate.py' adding 'MDAnalysis/transformations/wrap.py' adding 'MDAnalysis/visualization/__init__.py' adding 'MDAnalysis/visualization/streamlines.py' adding 'MDAnalysis/visualization/streamlines_3D.py' adding 'MDAnalysis-2.5.0.dist-info/AUTHORS' adding 'MDAnalysis-2.5.0.dist-info/LICENSE' adding 'MDAnalysis-2.5.0.dist-info/METADATA' adding 'MDAnalysis-2.5.0.dist-info/WHEEL' adding 'MDAnalysis-2.5.0.dist-info/top_level.txt' adding 'MDAnalysis-2.5.0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built MDAnalysis-2.5.0-cp311-cp311-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.11 with "installer" module dh_auto_build: error: pybuild --build -i python{version} -p "3.12 3.11" returned exit code 13 make: *** [debian/rules:14: build] Error 25 dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2 -------------------------------------------------------------------------------- The above is just how the build ends and not necessarily the most relevant part. If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202405/ About the archive rebuild: The build was made on virtual machines of type m6a.large and r6a.large from AWS, using sbuild and a reduced chroot with only build-essential packages. If you could not reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks.