test_embedded_r.py s.......Fatal Python error: Segmentation fault)

Debian Bug Tracking System Sun, 26 May 2024 06:51:23 -0700

Your message dated Sun, 26 May 2024 13:49:42 +0000
with message-id <e1sbefq-000etw...@fasolo.debian.org>
and subject line Bug#1071362: fixed in rpy2 3.5.16-2
has caused the Debian Bug report #1071362,
regarding rpy2: FTBFS: rpy2/tests/rinterface/test_embedded_r.py s.......Fatal 
Python error: Segmentation fault
to be marked as done.


This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1071362: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1071362
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Package: src:rpy2
Version: 3.5.16-1
Severity: serious
Tags: ftbfs

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules build
dh build --with python3 --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py config
cffi mode is CFFI_MODE.ANY
Looking for R home with: R RHOME
R home found: /usr/lib/R
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --ldflags
['-Wl,--export-dynamic -fopenmp -Wl,-z,relro -L/usr/lib/R/lib -lR -lpcre2-8 
-ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config BLAS_LIBS
['-lblas', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --cppflags
['-I/usr/share/R/include', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config LIBnn
['lib', '']
cffi mode is CFFI_MODE.ANY
Looking for R home with: R RHOME
R home found: /usr/lib/R
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --ldflags
['-Wl,--export-dynamic -fopenmp -Wl,-z,relro -L/usr/lib/R/lib -lR -lpcre2-8 
-ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config BLAS_LIBS
['-lblas', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --cppflags
['-I/usr/share/R/include', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config LIBnn
['lib', '']
running config
I: pybuild base:311: python3.11 setup.py config
cffi mode is CFFI_MODE.ANY
Looking for R home with: R RHOME
R home found: /usr/lib/R
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --ldflags
['-Wl,--export-dynamic -fopenmp -Wl,-z,relro -L/usr/lib/R/lib -lR -lpcre2-8 
-ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config BLAS_LIBS
['-lblas', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --cppflags
['-I/usr/share/R/include', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config LIBnn
['lib', '']
cffi mode is CFFI_MODE.ANY
Looking for R home with: R RHOME
R home found: /usr/lib/R
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --ldflags
['-Wl,--export-dynamic -fopenmp -Wl,-z,relro -L/usr/lib/R/lib -lR -lpcre2-8 
-ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config BLAS_LIBS
['-lblas', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --cppflags
['-I/usr/share/R/include', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config LIBnn
['lib', '']
running config
   dh_auto_build -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.12 setup.py build
cffi mode is CFFI_MODE.ANY
Looking for R home with: R RHOME
R home found: /usr/lib/R
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --ldflags
['-Wl,--export-dynamic -fopenmp -Wl,-z,relro -L/usr/lib/R/lib -lR -lpcre2-8 
-ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config BLAS_LIBS
['-lblas', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --cppflags
['-I/usr/share/R/include', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config LIBnn
['lib', '']
cffi mode is CFFI_MODE.ANY
Looking for R home with: R RHOME
R home found: /usr/lib/R
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --ldflags
['-Wl,--export-dynamic -fopenmp -Wl,-z,relro -L/usr/lib/R/lib -lR -lpcre2-8 
-ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config BLAS_LIBS
['-lblas', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --cppflags
['-I/usr/share/R/include', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config LIBnn
['lib', '']
running build
cffi mode: CFFI_MODE.ANY
running build_py
file _rinterface_cffi_abi.py (for module _rinterface_cffi_abi) not found
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2
copying rpy2/situation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2
copying rpy2/rinterface.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2
copying rpy2/_rinterface_cffi_build.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2
copying rpy2/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rlike
copying rpy2/rlike/container.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rlike
copying rpy2/rlike/functional.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rlike
copying rpy2/rlike/indexing.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rlike
copying rpy2/rlike/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rlike
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/conversion.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/memorymanagement.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/openrlib.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/na_values.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/_rinterface_capi.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/embedded_mswin.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/ffi_proxy.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/sexp.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/bufferprotocol.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/callbacks.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/embedded.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects
copying rpy2/robjects/vectors.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects
copying rpy2/robjects/environments.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects
copying rpy2/robjects/conversion.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects
copying rpy2/robjects/packages_utils.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects
copying rpy2/robjects/functions.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects
copying rpy2/robjects/pandas2ri.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects
copying rpy2/robjects/language.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects
copying rpy2/robjects/constants.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects
copying rpy2/robjects/packages.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects
copying rpy2/robjects/numpy2ri.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects
copying rpy2/robjects/methods.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects
copying rpy2/robjects/help.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects
copying rpy2/robjects/robject.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects
copying rpy2/robjects/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects/lib
copying rpy2/robjects/lib/tidyr.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects/lib
copying rpy2/robjects/lib/ggplot2.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects/lib
copying rpy2/robjects/lib/grid.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects/lib
copying rpy2/robjects/lib/dplyr.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects/lib
copying rpy2/robjects/lib/grdevices.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects/lib
copying rpy2/robjects/lib/dbplyr.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects/lib
copying rpy2/robjects/lib/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects/lib
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/interactive
copying rpy2/interactive/process_revents.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/interactive
copying rpy2/interactive/packages.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/interactive
copying rpy2/interactive/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/interactive
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/ipython
copying rpy2/ipython/ggplot.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/ipython
copying rpy2/ipython/rmagic.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/ipython
copying rpy2/ipython/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/ipython
copying rpy2/ipython/html.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/ipython
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests
copying rpy2/tests/utils.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests
copying rpy2/tests/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_int.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_na.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_list.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_endr.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_float.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_functions.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_noinitialization.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_callbacks.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_str.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vectors.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_bufferprotocol.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_openrlib.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_numpy.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_conversion.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_pairlist.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_externalptr.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_embedded_r.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_environment.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_memorymanagement.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_complex.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_lang.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_sexp.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_byte.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_symbol.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_bool.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_threading.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rinterface
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rlike
copying rpy2/tests/rlike/test_functional.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rlike
copying rpy2/tests/rlike/test_indexing.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rlike
copying rpy2/tests/rlike/test_container.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/rlike
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_packages_utils.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_vector.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_vector_datetime.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_dataframe.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_array.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_pandas_conversions.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_function.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_methods.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_serialization.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_help.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_conversion.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_rs4.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_robjects.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_vector_extractdelegator.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_packages.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_language.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_environment.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_conversion_numpy.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_translated_function.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_formula.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_vector_factor.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/ipython
copying rpy2/tests/ipython/test_ggplot.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/ipython
copying rpy2/tests/ipython/test_rmagic.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/ipython
copying rpy2/tests/ipython/test_html.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/ipython
copying rpy2/tests/ipython/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/ipython
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects/lib
copying rpy2/tests/robjects/lib/test_grdevices.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects/lib
copying rpy2/tests/robjects/lib/test_ggplot2.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects/lib
copying rpy2/tests/robjects/lib/test_grid.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects/lib
copying rpy2/tests/robjects/lib/test_tidyr.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects/lib
copying rpy2/tests/robjects/lib/test_dplyr.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects/lib
copying rpy2/tests/robjects/lib/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects/lib
copying rpy2/tests/robjects/lib/test_dbplyr.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/robjects/lib
running egg_info
writing rpy2.egg-info/PKG-INFO
writing dependency_links to rpy2.egg-info/dependency_links.txt
writing requirements to rpy2.egg-info/requires.txt
writing top-level names to rpy2.egg-info/top_level.txt
reading manifest file 'rpy2.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'README' anywhere in distribution
warning: no previously-included files matching '*patch*' found anywhere in 
distribution
warning: no previously-included files matching '*diff*' found anywhere in 
distribution
warning: no previously-included files matching '.hg' found anywhere in 
distribution
warning: no files found matching 'MANIFEST'
warning: no files found matching '_rinterface_cffi_build'
warning: no files found matching 'rpy/__init__.py'
warning: no files found matching 'rpy/situation.py'
warning: no files found matching '*.py' under directory 'rpy/robjects'
warning: no files found matching '*.py' under directory 'rpy/ipython'
warning: no files found matching '*.py' under directory 'rpy/interactive'
warning: no files found matching '*.py' under directory 'rpy/rlike'
no previously-included directories found matching 'dist'
warning: no files found matching 'doc/source/rpy2_logo.png'
adding license file 'LICENSE'
adding license file 'AUTHORS'
writing manifest file 'rpy2.egg-info/SOURCES.txt'
copying rpy2/rinterface_lib/R_API.h -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/R_API_eventloop.h -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/R_API_eventloop.c -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/RPY2.h -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/_bufferprotocol.c -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib
file _rinterface_cffi_abi.py (for module _rinterface_cffi_abi) not found
generating cffi module 
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/_rinterface_cffi_abi.py'
running build_ext
generating cffi module 
'build/temp.linux-x86_64-cpython-312/_rinterface_cffi_api.c'
creating build
creating build/temp.linux-x86_64-cpython-312
building 'rpy2.rinterface_lib._bufferprotocol' extension
creating build/temp.linux-x86_64-cpython-312/rpy2
creating build/temp.linux-x86_64-cpython-312/rpy2/rinterface_lib
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 
-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c 
rpy2/rinterface_lib/_bufferprotocol.c -o 
build/temp.linux-x86_64-cpython-312/rpy2/rinterface_lib/_bufferprotocol.o
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro 
-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-Wdate-time -D_FORTIFY_SOURCE=2 
build/temp.linux-x86_64-cpython-312/rpy2/rinterface_lib/_bufferprotocol.o -L/usr/lib/x86_64-linux-gnu 
-o 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface_lib/_bufferprotocol.cpython-312-x86_64-linux-gnu.so
building '_rinterface_cffi_api' extension
creating build/temp.linux-x86_64-cpython-312/build
creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 
-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DRPY2_RLEN_LONG=True 
-DR_INTERFACE_PTRS=True -Irpy2/rinterface_lib/ -I/usr/include/python3.12 -c 
build/temp.linux-x86_64-cpython-312/_rinterface_cffi_api.c -o 
build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/_rinterface_cffi_api.o
 -std=c99
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro 
-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-Wdate-time -D_FORTIFY_SOURCE=2 
build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/_rinterface_cffi_api.o 
-L/usr/lib/R/lib -L/usr/lib/x86_64-linux-gnu -lR -lpcre2-8 -ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl 
-lm -licuuc -licui18n -lblas -o 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/_rinterface_cffi_api.abi3.so 
-Wl,--export-dynamic -fopenmp -Wl,-z,relro -Wl,-rpath,/usr/lib/R/lib
---
CFFI_MODE.ANY
ABI mode interface built.
API mode interface built.
To change the API/ABI build mode, set or modify the environment variable 
RPY2_CFFI_MODE.
I: pybuild base:311: /usr/bin/python3 setup.py build
cffi mode is CFFI_MODE.ANY
Looking for R home with: R RHOME
R home found: /usr/lib/R
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --ldflags
['-Wl,--export-dynamic -fopenmp -Wl,-z,relro -L/usr/lib/R/lib -lR -lpcre2-8 
-ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config BLAS_LIBS
['-lblas', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --cppflags
['-I/usr/share/R/include', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config LIBnn
['lib', '']
cffi mode is CFFI_MODE.ANY
Looking for R home with: R RHOME
R home found: /usr/lib/R
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --ldflags
['-Wl,--export-dynamic -fopenmp -Wl,-z,relro -L/usr/lib/R/lib -lR -lpcre2-8 
-ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config BLAS_LIBS
['-lblas', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config --cppflags
['-I/usr/share/R/include', '']
R exec path: /usr/lib/R/bin/R
Looking for R CONFIG with: /usr/lib/R/bin/R CMD config LIBnn
['lib', '']
running build
cffi mode: CFFI_MODE.ANY
running build_py
file _rinterface_cffi_abi.py (for module _rinterface_cffi_abi) not found
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2
copying rpy2/situation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2
copying rpy2/rinterface.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2
copying rpy2/_rinterface_cffi_build.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2
copying rpy2/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rlike
copying rpy2/rlike/container.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rlike
copying rpy2/rlike/functional.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rlike
copying rpy2/rlike/indexing.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rlike
copying rpy2/rlike/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rlike
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/conversion.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/memorymanagement.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/openrlib.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/na_values.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/_rinterface_capi.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/embedded_mswin.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/ffi_proxy.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/sexp.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/bufferprotocol.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/callbacks.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/embedded.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects
copying rpy2/robjects/vectors.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects
copying rpy2/robjects/environments.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects
copying rpy2/robjects/conversion.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects
copying rpy2/robjects/packages_utils.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects
copying rpy2/robjects/functions.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects
copying rpy2/robjects/pandas2ri.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects
copying rpy2/robjects/language.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects
copying rpy2/robjects/constants.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects
copying rpy2/robjects/packages.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects
copying rpy2/robjects/numpy2ri.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects
copying rpy2/robjects/methods.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects
copying rpy2/robjects/help.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects
copying rpy2/robjects/robject.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects
copying rpy2/robjects/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects/lib
copying rpy2/robjects/lib/tidyr.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects/lib
copying rpy2/robjects/lib/ggplot2.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects/lib
copying rpy2/robjects/lib/grid.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects/lib
copying rpy2/robjects/lib/dplyr.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects/lib
copying rpy2/robjects/lib/grdevices.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects/lib
copying rpy2/robjects/lib/dbplyr.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects/lib
copying rpy2/robjects/lib/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/robjects/lib
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/interactive
copying rpy2/interactive/process_revents.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/interactive
copying rpy2/interactive/packages.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/interactive
copying rpy2/interactive/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/interactive
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/ipython
copying rpy2/ipython/ggplot.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/ipython
copying rpy2/ipython/rmagic.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/ipython
copying rpy2/ipython/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/ipython
copying rpy2/ipython/html.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/ipython
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests
copying rpy2/tests/utils.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests
copying rpy2/tests/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_int.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_na.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_list.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_endr.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_float.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_functions.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_noinitialization.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_callbacks.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_str.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vectors.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_bufferprotocol.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_openrlib.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_numpy.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_conversion.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_pairlist.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_externalptr.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_embedded_r.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_environment.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_memorymanagement.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_complex.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_lang.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_sexp.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_byte.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_symbol.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_vector_bool.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
copying rpy2/tests/rinterface/test_threading.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rinterface
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rlike
copying rpy2/tests/rlike/test_functional.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rlike
copying rpy2/tests/rlike/test_indexing.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rlike
copying rpy2/tests/rlike/test_container.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/rlike
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_packages_utils.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_vector.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_vector_datetime.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_dataframe.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_array.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_pandas_conversions.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_function.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_methods.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_serialization.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_help.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_conversion.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_rs4.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_robjects.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_vector_extractdelegator.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_packages.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_language.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_environment.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_conversion_numpy.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_translated_function.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_formula.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
copying rpy2/tests/robjects/test_vector_factor.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/ipython
copying rpy2/tests/ipython/test_ggplot.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/ipython
copying rpy2/tests/ipython/test_rmagic.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/ipython
copying rpy2/tests/ipython/test_html.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/ipython
copying rpy2/tests/ipython/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/ipython
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects/lib
copying rpy2/tests/robjects/lib/test_grdevices.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects/lib
copying rpy2/tests/robjects/lib/test_ggplot2.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects/lib
copying rpy2/tests/robjects/lib/test_grid.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects/lib
copying rpy2/tests/robjects/lib/test_tidyr.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects/lib
copying rpy2/tests/robjects/lib/test_dplyr.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects/lib
copying rpy2/tests/robjects/lib/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects/lib
copying rpy2/tests/robjects/lib/test_dbplyr.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/tests/robjects/lib
running egg_info
writing rpy2.egg-info/PKG-INFO
writing dependency_links to rpy2.egg-info/dependency_links.txt
writing requirements to rpy2.egg-info/requires.txt
writing top-level names to rpy2.egg-info/top_level.txt
reading manifest file 'rpy2.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'README' anywhere in distribution
warning: no previously-included files matching '*patch*' found anywhere in 
distribution
warning: no previously-included files matching '*diff*' found anywhere in 
distribution
warning: no previously-included files matching '.hg' found anywhere in 
distribution
warning: no files found matching 'MANIFEST'
warning: no files found matching '_rinterface_cffi_build'
warning: no files found matching 'rpy/__init__.py'
warning: no files found matching 'rpy/situation.py'
warning: no files found matching '*.py' under directory 'rpy/robjects'
warning: no files found matching '*.py' under directory 'rpy/ipython'
warning: no files found matching '*.py' under directory 'rpy/interactive'
warning: no files found matching '*.py' under directory 'rpy/rlike'
no previously-included directories found matching 'dist'
warning: no files found matching 'doc/source/rpy2_logo.png'
adding license file 'LICENSE'
adding license file 'AUTHORS'
writing manifest file 'rpy2.egg-info/SOURCES.txt'
copying rpy2/rinterface_lib/R_API.h -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/R_API_eventloop.h -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/R_API_eventloop.c -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/RPY2.h -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib
copying rpy2/rinterface_lib/_bufferprotocol.c -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib
file _rinterface_cffi_abi.py (for module _rinterface_cffi_abi) not found
generating cffi module 
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/_rinterface_cffi_abi.py'
running build_ext
generating cffi module 
'build/temp.linux-x86_64-cpython-311/_rinterface_cffi_api.c'
creating build/temp.linux-x86_64-cpython-311
building 'rpy2.rinterface_lib._bufferprotocol' extension
creating build/temp.linux-x86_64-cpython-311/rpy2
creating build/temp.linux-x86_64-cpython-311/rpy2/rinterface_lib
x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g 
-Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection 
-Wformat -Werror=format-security -fcf-protection -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 
-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c 
rpy2/rinterface_lib/_bufferprotocol.c -o 
build/temp.linux-x86_64-cpython-311/rpy2/rinterface_lib/_bufferprotocol.o
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-Wdate-time -D_FORTIFY_SOURCE=2 
build/temp.linux-x86_64-cpython-311/rpy2/rinterface_lib/_bufferprotocol.o -L/usr/lib/x86_64-linux-gnu 
-o 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/rpy2/rinterface_lib/_bufferprotocol.cpython-311-x86_64-linux-gnu.so
building '_rinterface_cffi_api' extension
creating build/temp.linux-x86_64-cpython-311/build
creating build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311
x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g 
-Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection 
-Wformat -Werror=format-security -fcf-protection -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 
-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DRPY2_RLEN_LONG=True 
-DR_INTERFACE_PTRS=True -Irpy2/rinterface_lib/ -I/usr/include/python3.11 -c 
build/temp.linux-x86_64-cpython-311/_rinterface_cffi_api.c -o 
build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/_rinterface_cffi_api.o
 -std=c99
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-Wdate-time -D_FORTIFY_SOURCE=2 
build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/_rinterface_cffi_api.o 
-L/usr/lib/R/lib -L/usr/lib/x86_64-linux-gnu -lR -lpcre2-8 -ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl 
-lm -licuuc -licui18n -lblas -o 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/_rinterface_cffi_api.abi3.so 
-Wl,--export-dynamic -fopenmp -Wl,-z,relro -Wl,-rpath,/usr/lib/R/lib
---
CFFI_MODE.ANY
ABI mode interface built.
API mode interface built.
To change the API/ABI build mode, set or modify the environment variable 
RPY2_CFFI_MODE.
   dh_auto_test -O--buildsystem=pybuild
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build; 
python3.12 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.12.3, pytest-8.1.2, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build
configfile: pyproject.toml
testpaths: rpy2/tests
collected 857 items

rpy2/tests/ipython/test_ggplot.py s                                      [  0%]
rpy2/tests/ipython/test_html.py ssssssss                                 [  1%]
rpy2/tests/ipython/test_rmagic.py ssssssssssssssssssssss                 [  3%]
rpy2/tests/rinterface/test_bufferprotocol.py ...                         [  3%]
rpy2/tests/rinterface/test_callbacks.py ...................s...          [  6%]
rpy2/tests/rinterface/test_conversion.py .                               [  6%]
rpy2/tests/rinterface/test_embedded_r.py s.............................. [ 10%]
.............                                                            [ 11%]
rpy2/tests/rinterface/test_endr.py s                                     [ 12%]
rpy2/tests/rinterface/test_environment.py .............................  [ 15%]
rpy2/tests/rinterface/test_externalptr.py ...ss                          [ 15%]
rpy2/tests/rinterface/test_functions.py ......................           [ 18%]
rpy2/tests/rinterface/test_memorymanagement.py ...                       [ 18%]
rpy2/tests/rinterface/test_na.py .....s......................            [ 22%]
rpy2/tests/rinterface/test_noinitialization.py ssss                      [ 22%]
rpy2/tests/rinterface/test_openrlib.py .........                         [ 23%]
rpy2/tests/rinterface/test_sexp.py ..........................x.....      [ 27%]
rpy2/tests/rinterface/test_symbol.py ....                                [ 27%]
rpy2/tests/rinterface/test_threading.py ss                               [ 28%]
rpy2/tests/rinterface/test_vector_bool.py ..........                     [ 29%]
rpy2/tests/rinterface/test_vector_byte.py ............                   [ 30%]
rpy2/tests/rinterface/test_vector_complex.py .........                   [ 31%]
rpy2/tests/rinterface/test_vector_float.py ..........                    [ 32%]
rpy2/tests/rinterface/test_vector_int.py ..s...................          [ 35%]
rpy2/tests/rinterface/test_vector_lang.py ......                         [ 36%]
rpy2/tests/rinterface/test_vector_list.py .......                        [ 36%]
rpy2/tests/rinterface/test_vector_numpy.py ..s..                         [ 37%]
rpy2/tests/rinterface/test_vector_pairlist.py .....                      [ 38%]
rpy2/tests/rinterface/test_vector_str.py ...........                     [ 39%]
rpy2/tests/rinterface/test_vectors.py ...................                [ 41%]
rpy2/tests/rlike/test_container.py ..................................    [ 45%]
rpy2/tests/rlike/test_functional.py ...                                  [ 45%]
rpy2/tests/rlike/test_indexing.py .                                      [ 46%]
rpy2/tests/robjects/lib/test_dbplyr.py s                                 [ 46%]
rpy2/tests/robjects/lib/test_dplyr.py sssssssssssssssssssss              [ 48%]
rpy2/tests/robjects/lib/test_ggplot2.py ssssssssssssssssssssss           [ 51%]
rpy2/tests/robjects/lib/test_grdevices.py ...                            [ 51%]
rpy2/tests/robjects/lib/test_grid.py ................                    [ 53%]
rpy2/tests/robjects/lib/test_tidyr.py sss                                [ 53%]
rpy2/tests/robjects/test_array.py ................                       [ 55%]
rpy2/tests/robjects/test_conversion.py .............................     [ 59%]
rpy2/tests/robjects/test_conversion_numpy.py ........................... [ 62%]
..........                                                               [ 63%]
rpy2/tests/robjects/test_dataframe.py ..................                 [ 65%]
rpy2/tests/robjects/test_environment.py ...........                      [ 66%]
rpy2/tests/robjects/test_formula.py ....                                 [ 67%]
rpy2/tests/robjects/test_function.py ..............................      [ 70%]
rpy2/tests/robjects/test_help.py ...........                             [ 71%]
rpy2/tests/robjects/test_language.py .....                               [ 72%]
rpy2/tests/robjects/test_methods.py .......                              [ 73%]
rpy2/tests/robjects/test_packages.py ....................                [ 75%]
rpy2/tests/robjects/test_packages_utils.py .......                       [ 76%]
rpy2/tests/robjects/test_pandas_conversions.py sssssssssssssssssssssssss [ 79%]
ssssssssssssssssssssssssssssssssssssssssssssss                           [ 84%]
rpy2/tests/robjects/test_robjects.py .............                       [ 86%]
rpy2/tests/robjects/test_rs4.py ...                                      [ 86%]
rpy2/tests/robjects/test_serialization.py .                              [ 86%]
rpy2/tests/robjects/test_translated_function.py ....                     [ 87%]
rpy2/tests/robjects/test_vector.py ..................................... [ 91%]
..................X...................                                   [ 96%]
rpy2/tests/robjects/test_vector_datetime.py ..x...............           [ 98%]
rpy2/tests/robjects/test_vector_extractdelegator.py .......              [ 98%]
rpy2/tests/robjects/test_vector_factor.py .........                      [100%]

=============================== warnings summary ===============================
rpy2/tests/ipython/test_html.py:10
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/ipython/test_html.py:10:
 UserWarning: No module named 'IPython'
    warnings.warn(str(no_ipython))

rpy2/tests/ipython/test_rmagic.py:29
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/ipython/test_rmagic.py:29:
 UserWarning: No module named 'IPython'
    warnings.warn(str(no_ipython))

rpy2/tests/ipython/test_rmagic.py:48
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/tests/ipython/test_rmagic.py:48:
 PytestRemovedIn9Warning: Marks applied to fixtures have no effect
  See docs: 
https://docs.pytest.org/en/stable/deprecations.html#applying-a-mark-to-a-fixture-function
    @pytest.mark.skipif(IPython is None,

rpy2/rinterface.py:1168
rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[IntSexpVector-value0-INTEGER_ELT-_get_integer_elt_fallback]
rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[BoolSexpVector-value1-LOGICAL_ELT-_get_logical_elt_fallback]
rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[FloatSexpVector-value2-REAL_ELT-_get_real_elt_fallback]
rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[IntSexpVector-value0-_set_integer_elt_fallback-_get_integer_elt_fallback]
rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[BoolSexpVector-value1-_set_logical_elt_fallback-_get_logical_elt_fallback]
rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[FloatSexpVector-value2-_set_real_elt_fallback-_get_real_elt_fallback]
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface.py:1168: UserWarning: 
Environment variable "LD_LIBRARY_PATH" redefined by R and overriding existing variable.
    warnings.warn(

rpy2/rinterface.py:1168
rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[IntSexpVector-value0-INTEGER_ELT-_get_integer_elt_fallback]
rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[BoolSexpVector-value1-LOGICAL_ELT-_get_logical_elt_fallback]
rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[FloatSexpVector-value2-REAL_ELT-_get_real_elt_fallback]
rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[IntSexpVector-value0-_set_integer_elt_fallback-_get_integer_elt_fallback]
rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[BoolSexpVector-value1-_set_logical_elt_fallback-_get_logical_elt_fallback]
rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[FloatSexpVector-value2-_set_real_elt_fallback-_get_real_elt_fallback]
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface.py:1168: UserWarning: 
Environment variable "R_LIBS_SITE" redefined by R and overriding existing variable.
    warnings.warn(

rpy2/rinterface.py:1168
rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[IntSexpVector-value0-INTEGER_ELT-_get_integer_elt_fallback]
rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[BoolSexpVector-value1-LOGICAL_ELT-_get_logical_elt_fallback]
rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[FloatSexpVector-value2-REAL_ELT-_get_real_elt_fallback]
rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[IntSexpVector-value0-_set_integer_elt_fallback-_get_integer_elt_fallback]
rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[BoolSexpVector-value1-_set_logical_elt_fallback-_get_logical_elt_fallback]
rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[FloatSexpVector-value2-_set_real_elt_fallback-_get_real_elt_fallback]
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/rinterface.py:1168: UserWarning: 
Environment variable "R_SESSION_TMPDIR" redefined by R and overriding existing variable.
    warnings.warn(

rpy2/tests/robjects/test_dataframe.py: 6 warnings
rpy2/tests/robjects/test_language.py: 2 warnings
rpy2/tests/robjects/test_vector.py: 6 warnings
rpy2/tests/robjects/test_vector_factor.py: 5 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects/conversion.py:28: 
DeprecationWarning: The use of rpy2py in module rpy2.robjects.conversion is deprecated. Use 
rpy2.robjects.conversion.get_conversion() instead of rpy2.robjects.conversion.converter.
    warnings.warn(

rpy2/tests/robjects/test_language.py::test_eval
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/rpy2/robjects/language.py:50: 
DeprecationWarning: This function is deprecated. Use evaluation_context directly.
    envir = ri.get_evaluation_context()

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
===== 691 passed, 163 skipped, 2 xfailed, 1 xpassed, 44 warnings in 10.67s =====
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build; 
python3.11 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.11.9, pytest-8.1.2, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build
configfile: pyproject.toml
testpaths: rpy2/tests
collected 857 items

rpy2/tests/ipython/test_ggplot.py s                                      [  0%]
rpy2/tests/ipython/test_html.py ssssssss                                 [  1%]
rpy2/tests/ipython/test_rmagic.py ssssssssssssssssssssss                 [  3%]
rpy2/tests/rinterface/test_bufferprotocol.py ...                         [  3%]
rpy2/tests/rinterface/test_callbacks.py ...................s...          [  6%]
rpy2/tests/rinterface/test_conversion.py .                               [  6%]
rpy2/tests/rinterface/test_embedded_r.py s.......Fatal Python error: 
Segmentation fault

Current thread 0x00007f919e48e040 (most recent call first):
Segmentation fault
E: pybuild pybuild:389: test: plugin distutils failed with: exit code=139: cd 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build; python3.11 -m pytest
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 
3.11" returned exit code 13
make: *** [debian/rules:19: build] Error 25
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202405/

About the archive rebuild: The build was made on virtual machines
of type m6a.large and r6a.large from AWS, using sbuild and a
reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.

Thanks.

--- End Message ---

--- Begin Message ---

Source: rpy2
Source-Version: 3.5.16-2
Done: Dirk Eddelbuettel <e...@debian.org>

We believe that the bug you reported is fixed in the latest version of
rpy2, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1071...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Dirk Eddelbuettel <e...@debian.org> (supplier of updated rpy2 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Sun, 26 May 2024 08:00:19 -0500
Source: rpy2
Architecture: source
Version: 3.5.16-2
Distribution: unstable
Urgency: medium
Maintainer: Dirk Eddelbuettel <e...@debian.org>
Changed-By: Dirk Eddelbuettel <e...@debian.org>
Closes: 1071362
Changes:
 rpy2 (3.5.16-2) unstable; urgency=medium
 .
   [Bo Yu]
   * debian/patches/skip_complex_tests_on_mips64el_and_riscv64: Extended
     mips64el patch to also skip tests on riscv64
 .
   [Dirk Eddelbuettel]
   * Applied patch to address build issue on riskv64    (Closes: #1071362)
   * debian/patches/skip_r_embedding_tests: Skip embedding tests which now
     seg.fault under R 4.4.0 while we await a response from upstream
Checksums-Sha1:
 b945ec878798da5295a216d7f887850e24b3fe14 1934 rpy2_3.5.16-2.dsc
 775418e185b60c1a7aeb589a64aa9c840a08c63e 20252 rpy2_3.5.16-2.debian.tar.xz
 528a26494bd933652937a4b99ae813c99b263f95 11520 rpy2_3.5.16-2_amd64.buildinfo
Checksums-Sha256:
 b4acb4a6d5b855576f461852d543d2cb3ed8a60d3427924625b1fea377bf55e9 1934 
rpy2_3.5.16-2.dsc
 1335ad82aa7b4bbc79a1c0f224bd04ea1b264eacb63a797e27f2e768454bf328 20252 
rpy2_3.5.16-2.debian.tar.xz
 5c21560f128bb4d16ae39e42e2e6c52aee1195aa1c8452083e7316a119705e15 11520 
rpy2_3.5.16-2_amd64.buildinfo
Files:
 3e9260c32e45550d9067a1640d13f393 1934 python optional rpy2_3.5.16-2.dsc
 2089c14ff6e90df4efc1323e40e882fd 20252 python optional 
rpy2_3.5.16-2.debian.tar.xz
 1a1144a08bdc8bb786e6ea9b9c6f63c6 11520 python optional 
rpy2_3.5.16-2_amd64.buildinfo

-----BEGIN PGP SIGNATURE-----
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=vyB5
-----END PGP SIGNATURE-----

pgp7c4wbYL_UD.pgp
Description: PGP signature

--- End Message ---

Bug#1071362: marked as done (rpy2: FTBFS: rpy2/tests/rinterface/test_embedded_r.py s.......Fatal Python error: Segmentation fault)

Reply via email to