Your message dated Wed, 26 Jun 2024 17:29:27 +0000
with message-id <e1smwsv-00boxp...@fasolo.debian.org>
and subject line Bug#1073321: fixed in libsbml 5.20.2+dfsg-8
has caused the Debian Bug report #1073321,
regarding libsbml: FTBFS: LibXMLParser.cpp:427:46: error: invalid conversion
from ‘const xmlError*’ {aka ‘const _xmlError*’} to ‘xmlErrorPtr’ {aka
‘_xmlError*’} [-fpermissive]
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1073321: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1073321
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: libsbml
Version: 5.20.2+dfsg-7
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20240615 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> cd /<<PKGBUILDDIR>>/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC
> -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH
> -DUSE_LAYOUT -DUSE_LIBXML -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS
> -I/<<PKGBUILDDIR>>/build/src/src/sbml -I/<<PKGBUILDDIR>>/build/src/src
> -I/<<PKGBUILDDIR>>/build/src -I/<<PKGBUILDDIR>>/src
> -I/<<PKGBUILDDIR>>/src/sbml -I/<<PKGBUILDDIR>>/src/sbml/packages/comp/common
> -I/<<PKGBUILDDIR>>/src/sbml/packages/comp/extension
> -I/<<PKGBUILDDIR>>/src/sbml/packages/comp/sbml
> -I/<<PKGBUILDDIR>>/src/sbml/packages/comp/util
> -I/<<PKGBUILDDIR>>/src/sbml/packages/comp/validator
> -I/<<PKGBUILDDIR>>/src/sbml/packages/comp/validator/constraints
> -I/<<PKGBUILDDIR>>/src/sbml/packages/fbc/common
> -I/<<PKGBUILDDIR>>/src/sbml/packages/fbc/extension
> -I/<<PKGBUILDDIR>>/src/sbml/packages/fbc/sbml
> -I/<<PKGBUILDDIR>>/src/sbml/packages/fbc/util
> -I/<<PKGBUILDDIR>>/src/sbml/packages/fbc/validator
> -I/<<PKGBUILDDIR>>/src/sbml/packages/fbc/validator/constraints
> -I/<<PKGBUILDDIR>>/src/sbml/packages/groups/common
> -I/<<PKGBUILDDIR>>/src/sbml/packages/groups/extension
> -I/<<PKGBUILDDIR>>/src/sbml/packages/groups/sbml
> -I/<<PKGBUILDDIR>>/src/sbml/packages/groups/validator
> -I/<<PKGBUILDDIR>>/src/sbml/packages/groups/validator/constraints
> -I/<<PKGBUILDDIR>>/src/sbml/packages/l3v2extendedmath/common
> -I/<<PKGBUILDDIR>>/src/sbml/packages/l3v2extendedmath/extension
> -I/<<PKGBUILDDIR>>/src/sbml/packages/l3v2extendedmath/sbml
> -I/<<PKGBUILDDIR>>/src/sbml/packages/l3v2extendedmath/validator
> -I/<<PKGBUILDDIR>>/src/sbml/packages/l3v2extendedmath/validator/constraints
> -I/<<PKGBUILDDIR>>/src/sbml/packages/qual/common
> -I/<<PKGBUILDDIR>>/src/sbml/packages/qual/extension
> -I/<<PKGBUILDDIR>>/src/sbml/packages/qual/sbml
> -I/<<PKGBUILDDIR>>/src/sbml/packages/qual/validator
> -I/<<PKGBUILDDIR>>/src/sbml/packages/qual/validator/constraints
> -I/<<PKGBUILDDIR>>/src/sbml/packages/render/common
> -I/<<PKGBUILDDIR>>/src/sbml/packages/render/extension
> -I/<<PKGBUILDDIR>>/src/sbml/packages/render/sbml
> -I/<<PKGBUILDDIR>>/src/sbml/packages/render/util
> -I/<<PKGBUILDDIR>>/src/sbml/packages/render/validator
> -I/<<PKGBUILDDIR>>/src/sbml/packages/render/validator/constraints -isystem
> /usr/include/libxml2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -fstack-clash-protection -Wformat
> -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
> -fno-strict-aliasing -fPIC -fPIC -Wall -MD -MT
> src/CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o -MF
> CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o.d -o
> CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o -c
> /<<PKGBUILDDIR>>/src/sbml/xml/LibXMLParser.cpp
> /<<PKGBUILDDIR>>/src/sbml/xml/LibXMLParser.cpp: In member function ‘virtual
> bool LibXMLParser::parseNext()’:
> /<<PKGBUILDDIR>>/src/sbml/xml/LibXMLParser.cpp:427:46: error: invalid
> conversion from ‘const xmlError*’ {aka ‘const _xmlError*’} to ‘xmlErrorPtr’
> {aka ‘_xmlError*’} [-fpermissive]
> 427 | xmlErrorPtr libxmlError = xmlGetLastError();
> | ~~~~~~~~~~~~~~~^~
> | |
> | const xmlError* {aka
> const _xmlError*}
> make[3]: *** [src/CMakeFiles/sbml.dir/build.make:5623:
> src/CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o] Error 1
The full build log is available from:
http://qa-logs.debian.net/2024/06/15/libsbml_5.20.2+dfsg-7_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240615;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240615&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: libsbml
Source-Version: 5.20.2+dfsg-8
Done: Michael R. Crusoe <cru...@debian.org>
We believe that the bug you reported is fixed in the latest version of
libsbml, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1073...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <cru...@debian.org> (supplier of updated libsbml package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 26 Jun 2024 18:59:21 +0200
Source: libsbml
Architecture: source
Version: 5.20.2+dfsg-8
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@debian.org>
Closes: 1073321
Changes:
libsbml (5.20.2+dfsg-8) unstable; urgency=medium
.
* Team upload.
* Added patch from upstream to add libxml2 2.12.0 support.
Closes: #1073321
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