Your message dated Wed, 24 Jul 2024 19:33:56 +0000
with message-id <e1swhkk-00axns...@fasolo.debian.org>
and subject line Bug#1076879: fixed in epcr 2.3.12-1-10
has caused the Debian Bug report #1076879,
regarding epcr: FTBFS: re-PCR_main.cpp:30:10: fatal error: epcr/defaults.h: No
such file or directory
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1076879: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1076879
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:epcr
Version: 2.3.12-1-9
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules binary
dh binary --no-parallel
dh_update_autotools_config -O--no-parallel
dh_autoreconf -O--no-parallel
dh_auto_configure -O--no-parallel
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- links depend all OPTIMIZE=6
make -j1 "INSTALL=install --strip-program=true" links depend all
OPTIMIZE=6
make[2]: Entering directory '/<<PKGBUILDDIR>>'
for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \
make -ef ./stand/Makefile.$i CXXFLAGS='-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection' links ; \
done
make[3]: Entering directory '/<<PKGBUILDDIR>>'
if test -n "epcr" ; then \
test -L epcr || ln -s . epcr ; \
fi
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
if test -n "" ; then \
test -L || ln -s . ; \
fi
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
if test -n "" ; then \
test -L || ln -s . ; \
fi
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
if test -n "" ; then \
test -L || ln -s . ; \
fi
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
if test -n "" ; then \
test -L || ln -s . ; \
fi
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \
make -ef ./stand/Makefile.$i CXXFLAGS='-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection' depend ; \
done
make[3]: Entering directory '/<<PKGBUILDDIR>>'
g++ -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -M ./faread.cpp
./fast_seqio_read.cpp ./fast_seqio_write.cpp ./hashset.cpp ./mmap.cpp ./align.cpp
./stsmatch_i.cpp ./stsmatch_m.cpp ./stsfilter.cpp ./stsmatch.cpp ./fahash_create.cpp
./fahash_create1.cpp ./fahash_create2.cpp ./fahash_lookup.cpp | perl
-ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./libepcr_depend.mk
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
./faread.cpp:30:10: fatal error: epcr/faread.hpp: No such file or directory
30 | #include <epcr/faread.hpp>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
./fast_seqio_read.cpp:30:10: fatal error: epcr/fast_seqio.hpp: No such file or
directory
30 | #include <epcr/fast_seqio.hpp>
| ^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
./fast_seqio_write.cpp:30:10: fatal error: epcr/fast_seqio.hpp: No such file or
directory
30 | #include <epcr/fast_seqio.hpp>
| ^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
./hashset.cpp:30:10: fatal error: epcr/hashset.hpp: No such file or directory
30 | #include <epcr/hashset.hpp>
| ^~~~~~~~~~~~~~~~~~
compilation terminated.
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
./mmap.cpp:30:10: fatal error: epcr/mmap.hpp: No such file or directory
30 | #include <epcr/mmap.hpp>
| ^~~~~~~~~~~~~~~
compilation terminated.
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
./align.cpp:33:10: fatal error: epcr/align.hpp: No such file or directory
33 | #include <epcr/align.hpp>
| ^~~~~~~~~~~~~~~~
compilation terminated.
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
./stsmatch_i.cpp:30:10: fatal error: epcr/hashset.hpp: No such file or directory
30 | #include <epcr/hashset.hpp>
| ^~~~~~~~~~~~~~~~~~
compilation terminated.
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
./stsmatch_m.cpp:30:10: fatal error: epcr/defaults.h: No such file or directory
30 | #include <epcr/defaults.h>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
./stsfilter.cpp:30:10: fatal error: epcr/hashset.hpp: No such file or directory
30 | #include <epcr/hashset.hpp>
| ^~~~~~~~~~~~~~~~~~
compilation terminated.
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
./stsmatch.cpp:30:10: fatal error: epcr/defaults.h: No such file or directory
30 | #include <epcr/defaults.h>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
./fahash_create.cpp:30:10: fatal error: epcr/fahash.hpp: No such file or
directory
30 | #include <epcr/fahash.hpp>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
./fahash_create1.cpp:30:10: fatal error: epcr/fahash.hpp: No such file or
directory
30 | #include <epcr/fahash.hpp>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
./fahash_create2.cpp:30:10: fatal error: epcr/fahash.hpp: No such file or
directory
30 | #include <epcr/fahash.hpp>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
./fahash_lookup.cpp:30:10: fatal error: epcr/fahash.hpp: No such file or
directory
30 | #include <epcr/fahash.hpp>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
g++ -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -M ./e-PCR_main.cpp
| perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdepcr_depend.mk
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
./e-PCR_main.cpp:30:10: fatal error: epcr/defaults.h: No such file or directory
30 | #include <epcr/defaults.h>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
g++ -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -M ./famap_main.cpp
| perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdfamap_depend.mk
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
./famap_main.cpp:30:10: fatal error: epcr/fast_seqio.hpp: No such file or
directory
30 | #include <epcr/fast_seqio.hpp>
| ^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
g++ -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -M ./fahash_main.cpp
| perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdfahash_depend.mk
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
./fahash_main.cpp:30:10: fatal error: epcr/defaults.h: No such file or directory
30 | #include <epcr/defaults.h>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
g++ -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -M ./re-PCR_main.cpp
| perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdrpcr_depend.mk
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
./re-PCR_main.cpp:30:10: fatal error: epcr/defaults.h: No such file or directory
30 | #include <epcr/defaults.h>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \
make -ef ./stand/Makefile.$i CXXFLAGS='-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection' all ; \
done
make[3]: Entering directory '/<<PKGBUILDDIR>>'
if test -n "epcr" ; then \
test -L epcr || ln -s . epcr ; \
fi
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection
-Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection
-Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -c faread.cpp -o faread.o
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
faread.cpp:30:10: fatal error: epcr/faread.hpp: No such file or directory
30 | #include <epcr/faread.hpp>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
make[3]: *** [stand/config.mk:107: faread.o] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
if test -n "" ; then \
test -L || ln -s . ; \
fi
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection
-Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection
-Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -c e-PCR_main.cpp -o
e-PCR_main.o
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
e-PCR_main.cpp:30:10: fatal error: epcr/defaults.h: No such file or directory
30 | #include <epcr/defaults.h>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
make[3]: *** [stand/config.mk:107: e-PCR_main.o] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
if test -n "" ; then \
test -L || ln -s . ; \
fi
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection
-Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection
-Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -c famap_main.cpp -o
famap_main.o
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
famap_main.cpp:30:10: fatal error: epcr/fast_seqio.hpp: No such file or
directory
30 | #include <epcr/fast_seqio.hpp>
| ^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
make[3]: *** [stand/config.mk:107: famap_main.o] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
if test -n "" ; then \
test -L || ln -s . ; \
fi
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection
-Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection
-Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -c fahash_main.cpp -o
fahash_main.o
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
fahash_main.cpp:30:10: fatal error: epcr/defaults.h: No such file or directory
30 | #include <epcr/defaults.h>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
make[3]: *** [stand/config.mk:107: fahash_main.o] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
if test -n "" ; then \
test -L || ln -s . ; \
fi
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection
-Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection
-Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -c re-PCR_main.cpp -o
re-PCR_main.o
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’
is not valid for C++
re-PCR_main.cpp:30:10: fatal error: epcr/defaults.h: No such file or directory
30 | #include <epcr/defaults.h>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
make[3]: *** [stand/config.mk:107: re-PCR_main.o] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: *** [Makefile:31: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j1 "INSTALL=install --strip-program=true" links
depend all OPTIMIZE=6 returned exit code 2
make[1]: *** [debian/rules:26: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:17: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202407/
About the archive rebuild: The build was made on virtual machines
of type m6a.large and r6a.large from AWS, using sbuild and a
reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: epcr
Source-Version: 2.3.12-1-10
Done: Étienne Mollier <emoll...@debian.org>
We believe that the bug you reported is fixed in the latest version of
epcr, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1076...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <emoll...@debian.org> (supplier of updated epcr package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 24 Jul 2024 20:56:51 +0200
Source: epcr
Architecture: source
Version: 2.3.12-1-10
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emoll...@debian.org>
Closes: 1076879
Changes:
epcr (2.3.12-1-10) unstable; urgency=medium
.
* d/rules: slight modernization accomodating changes in build tools.
(Closes: #1076879)
* d/control: declare compliance to standards version 4.7.0.
* d/control: add myself to uploaders.
Checksums-Sha1:
944706be903327bc816029dbd179ede731428d68 2188 epcr_2.3.12-1-10.dsc
c78b427a85b089c39fe67d091eed04b63da936a6 56140 epcr_2.3.12-1-10.debian.tar.xz
Checksums-Sha256:
fb6c00224c7ab16c9d532acc34727bb3caf926e462596089c24fc94eb32435e6 2188
epcr_2.3.12-1-10.dsc
d80050f7c1858e7a5ad54a0f37266180f631156cc724f7c5463f51f5d9855ff7 56140
epcr_2.3.12-1-10.debian.tar.xz
Files:
1baafdb3f5f440da25079c0712f10692 2188 science optional epcr_2.3.12-1-10.dsc
b3a081e1b8d603bacb6c409b3ea1f704 56140 science optional
epcr_2.3.12-1-10.debian.tar.xz
-----BEGIN PGP SIGNATURE-----
iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmahUOkUHGVtb2xsaWVy
QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqxwQ/+LHdcjPJTscjaL3di98zlp7ydM+Cx
fjuoDxGE9dWdBOKNbij4+DFR2yWOV09ByuDwabhCGIsLwBYLPpnwLuQBDPMXfOvg
aM/Vnr1mDL3l051nRSXfY06BiWdTRHWo3dXlvgyJGwtlR6UAcBDbT5vrfkRJ9rpM
GQPPIglwUKvumdswokzruCBFiuF9INvwMp5AB9C6SU1/+gXMHzv0tslxad8F7qKh
rCZMI+/XIo49k4BEFEBOBVHuWqCWT7IjcAqW3sigWu6EHZw5OhRH4fTbZBOnDe6F
bY9mz97DY1e2fyRJGQ//3DDtwCfu2jJfRSVJf/I07ucsN2ulOrHtN/QC5i6dETh4
Gw8dOX4B3SCZjdiFji/rcxb26zlolWot3VWMvrbkPF7ayWH2npoLxEo4cCMkOSWy
AMki9tW9Agd2C8qsZltnFiqkBoGY8kCnbcn2uHUT/g9KgZGxwvplSsW05hWlCwgF
t3hGHIyjopeqB17GSAo333+OrmxKfGwM5d5yDTfzLNomgsVF6DJxTS0fjzZz9BrQ
HAclFw7v4HciUXeUMGoIeXAfYdA1p734oQwCKfeGJIUa1+U0J0MK0RkqsltwtkMT
C5K8uF7QS2eI75733l85AS+zk2kYW6a9li9wx2wUOZJR2ti+W3bS+gFRwrbDg0hK
HqCWaEn0SJrNzNg=
=dn8r
-----END PGP SIGNATURE-----
pgpIkAOaAdhzL.pgp
Description: PGP signature
--- End Message ---