Package: src:nauty
Version: 2.8.8+ds-5
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'autotool'.
libtoolize: copying file 'autotool/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:6: warning: The macro 'AC_CONFIG_HEADER' is obsolete.
configure.ac:6: You should run autoupdate.
./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from...
configure.ac:6: the top level
configure.ac:548: warning: The macro 'AC_TRY_RUN' is obsolete.
configure.ac:548: You should run autoupdate.
./lib/autoconf/general.m4:2995: AC_TRY_RUN is expanded from...
m4/gmp.m4:10: AM_PATH_GMP is expanded from...
configure.ac:548: the top level
configure.ac:548: warning: The macro 'AC_TRY_LINK' is obsolete.
configure.ac:548: You should run autoupdate.
./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from...
m4/gmp.m4:10: AM_PATH_GMP is expanded from...
configure.ac:548: the top level
configure.ac:169: installing 'autotool/compile'
configure.ac:144: installing 'autotool/config.guess'
configure.ac:144: installing 'autotool/config.sub'
configure.ac:7: installing 'autotool/install-sh'
configure.ac:7: installing 'autotool/missing'
Makefile.am:345: warning: nauty_dimacs2g_CPPFLAGS multiply defined in condition
TRUE ...
Makefile.am:308: ... 'nauty_dimacs2g_CPPFLAGS' previously defined here
Makefile.am: installing 'autotool/depcomp'
parallel-tests: installing 'autotool/test-driver'
Makefile.am:200: warning: variable 'NAUTYQ0_LDADD' is defined but no program or
Makefile.am:200: library has 'NAUTYQ0' as canonical name (possible typo)
Makefile.am:201: warning: variable 'NAUTYQ1_LDADD' is defined but no program or
Makefile.am:201: library has 'NAUTYQ1' as canonical name (possible typo)
debian/rules override_dh_auto_configure-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --enable-clz --enable-tls --disable-ansicontrols
./configure --build=x86_64-linux-gnu --prefix=/usr
--includedir=\${prefix}/include --mandir=\${prefix}/share/man
--infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var
--disable-option-checking --disable-silent-rules
--libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run
--disable-maintainer-mode --disable-dependency-tracking --enable-clz
--enable-tls --disable-ansicontrols
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for help2man... /usr/bin/help2man
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu
format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format...
func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for vfork.h... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared
libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gcc option to enable large file support... none needed
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for signal.h... yes
checking for stddef.h... yes
checking for unistd.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/wait.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for errno.h... yes
checking for limits.h... yes
checking for stdint.h... (cached) yes
checking for pid_t... yes
checking for gcc options needed to detect all undeclared functions... none
needed
checking whether ftell is declared... yes
checking whether popen is declared... yes
checking whether fdopen is declared... yes
checking whether putenv is declared... yes
checking whether setenv is declared... yes
checking whether malloc is declared... yes
checking how to run the C preprocessor... gcc -E
checking for egrep -e... (cached) /usr/bin/grep -E
checking if compiler accepts flexible array members... 1
checking if INFINITY is declared in math.h... 1
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of void*... 8
checking size of __uint128_t... 16
checking size of unsigned __int128... 16
checking for isatty... yes
checking for time... yes
checking for gettimeofday... yes
checking for clock_gettime... yes
checking for clock... yes
checking for times... yes
checking for getrusage... yes
checking for perror... yes
checking for pipe... yes
checking for wait... yes
checking for popen... yes
checking for putenv... yes
checking for setenv... yes
checking for fork... yes
checking for vfork... yes
checking for working fork... yes
checking for working vfork... (cached) yes
checking for fseeko... yes
checking for sigaction... yes
checking for sigprocmask... yes
checking if popcnt instruction is available and requested... 1
checking if __builtin_popcount() is supported... 1
checking if __builtin_popcountl() is supported... 1
checking if __builtin_popcountll() is supported... 1
checking if gcc supports -march=native... yes
CC=gcc
CFLAGS=-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
MORECFLAGS= -mpopcnt -march=native
checking if lzcnt instruction is available and requested... 1
checking if __builtin_clz() is supported... 1
checking if __builtin_clzl() is supported... 1
checking if __builtin_clzll() is supported... 1
checking for getc_unlocked... yes
checking for flockfile... yes
checking for noreturn attribute... _Noreturn
checking for thread local storage (TLS) class... _Thread_local
checking for gsort... no
checking for sort... sort
checking if sort supports the -k switch... 1
checking if sort supports the -S switch... 1
checking for gunzip... gunzip
checking if LD -Wl,--version-script works... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for cos in -lm... yes
checking whether ZLIB is disabled... no
checking for zlib >= 1.2.8... yes
checking whether GMP is disabled... no
checking for GMP - version >= 6.1.2... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating nauty.pc
config.status: creating Makefile
config.status: creating nauty/Makefile
config.status: creating nauty.h
config.status: creating naututil.h
config.status: creating gtools.h
config.status: creating runalltests
config.status: creating nauty/nauty_config.h
config.status: executing depfiles commands
config.status: executing libtool commands
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_configure-indep
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build-indep
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -Nnauty-doc
make -j2
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Making all in nauty
make[2]: Entering directory '/<<PKGBUILDDIR>>/nauty'
make all-am
make[3]: Entering directory '/<<PKGBUILDDIR>>/nauty'
rm -f nauty.h nautinv.h naurng.h nausparse.h naututil.h naugroup.h schreier.h
traces.h gtools.h gutils.h
HEADERLIST=" \
../nauty.h \
../naututil.h \
../gtools.h \
../nautinv.h \
../naurng.h \
../nausparse.h \
../naugroup.h \
../schreier.h \
../traces.h \
../gutils.h \
"; \
for h in $HEADERLIST; do \
BASENAME=`basename $h`; \
test -e $BASENAME || ln -s $h $BASENAME; \
done
make[3]: Leaving directory '/<<PKGBUILDDIR>>/nauty'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/nauty'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
gcc -DHAVE_CONFIG_H -I. -I./nauty -DDEBPKGVERSION=\"2.8.8+ds-5\" -Wdate-time
-D_FORTIFY_SOURCE=2 -I/usr/include/cliquer -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection
-Wformat -Werror=format-security -fcf-protection -c -o dreadnaut-dreadnaut.o `test -f 'dreadnaut.c'
|| echo './'`dreadnaut.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./nauty
-Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/cliquer -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security
-fcf-protection -c -o nauty.lo nauty.c
In file included from ./nauty/naututil.h:127,
from gtools.h:63,
from dreadnaut.c:110:
./nauty/nauty.h:64:23: error: operator '==' has no left operand
64 | #if _FILE_OFFSET_BITS == 64
| ^~
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./nauty -Wdate-time -D_FORTIFY_SOURCE=2
-I/usr/include/cliquer -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c nauty.c -fPIC
-DPIC -o .libs/nauty.o
In file included from nauty.c:73:
nauty.h:64:23: error: operator '==' has no left operand
64 | #if _FILE_OFFSET_BITS == 64
| ^~
make[2]: *** [Makefile:3953: dreadnaut-dreadnaut.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[2]: *** [Makefile:2749: nauty.lo] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: *** [Makefile:5344: all-recursive] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j2 returned exit code 2
make: *** [debian/rules:22: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202408/
About the archive rebuild: The build was made on virtual machines
of type m6a.large and r6a.large from AWS, using sbuild and a
reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
