Your message dated Wed, 08 Jan 2025 12:35:12 +0000
with message-id <[email protected]>
and subject line Bug#1090242: fixed in lmfit-py 1.2.2-4
has caused the Debian Bug report #1090242,
regarding lmfit-py: FTBFS: Invalid `intersphinx_mapping` configuration (1
error).
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1090242: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1090242
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:lmfit-py
Version: 1.2.2-3
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cp -a lmfit/version.py lmfit/version.py.orig
dh_auto_configure
pybuild --configure -i python{version} -p "3.13 3.12"
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -O--buildsystem=pybuild
pybuild --build -i python{version} -p "3.13 3.12"
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build"
module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation
--wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_lmfit
* Building wheel...
running bdist_wheel
running build
running build_py
creating build/lib/lmfit
copying lmfit/confidence.py -> build/lib/lmfit
copying lmfit/model.py -> build/lib/lmfit
copying lmfit/models.py -> build/lib/lmfit
copying lmfit/jsonutils.py -> build/lib/lmfit
copying lmfit/__init__.py -> build/lib/lmfit
copying lmfit/printfuncs.py -> build/lib/lmfit
copying lmfit/conf_emcee.py -> build/lib/lmfit
copying lmfit/lineshapes.py -> build/lib/lmfit
copying lmfit/_ampgo.py -> build/lib/lmfit
copying lmfit/version.py -> build/lib/lmfit
copying lmfit/parameter.py -> build/lib/lmfit
copying lmfit/minimizer.py -> build/lib/lmfit
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/confidence.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/model.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/models.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/jsonutils.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/__init__.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/printfuncs.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/conf_emcee.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/lineshapes.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/_ampgo.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/version.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/parameter.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/minimizer.py -> build/bdist.linux-x86_64/wheel/./lmfit
running install_egg_info
running egg_info
writing lmfit.egg-info/PKG-INFO
writing dependency_links to lmfit.egg-info/dependency_links.txt
writing requirements to lmfit.egg-info/requires.txt
writing top-level names to lmfit.egg-info/top_level.txt
reading manifest file 'lmfit.egg-info/SOURCES.txt'
adding license file 'LICENSE'
adding license file 'AUTHORS.txt'
writing manifest file 'lmfit.egg-info/SOURCES.txt'
Copying lmfit.egg-info to build/bdist.linux-x86_64/wheel/./lmfit-1.2.2.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/lmfit-1.2.2.dist-info/WHEEL
creating
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_lmfit/.tmp-ht18v7dx/lmfit-1.2.2-py3-none-any.whl'
and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'lmfit/__init__.py'
adding 'lmfit/_ampgo.py'
adding 'lmfit/conf_emcee.py'
adding 'lmfit/confidence.py'
adding 'lmfit/jsonutils.py'
adding 'lmfit/lineshapes.py'
adding 'lmfit/minimizer.py'
adding 'lmfit/model.py'
adding 'lmfit/models.py'
adding 'lmfit/parameter.py'
adding 'lmfit/printfuncs.py'
adding 'lmfit/version.py'
adding 'lmfit-1.2.2.dist-info/AUTHORS.txt'
adding 'lmfit-1.2.2.dist-info/LICENSE'
adding 'lmfit-1.2.2.dist-info/METADATA'
adding 'lmfit-1.2.2.dist-info/WHEEL'
adding 'lmfit-1.2.2.dist-info/top_level.txt'
adding 'lmfit-1.2.2.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Successfully built lmfit-1.2.2-py3-none-any.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with
"installer" module
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build"
module
I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation
--wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit
* Building wheel...
running bdist_wheel
running build
running build_py
copying lmfit/version.py -> build/lib/lmfit
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/confidence.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/model.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/models.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/jsonutils.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/__init__.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/printfuncs.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/conf_emcee.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/lineshapes.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/_ampgo.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/version.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/parameter.py -> build/bdist.linux-x86_64/wheel/./lmfit
copying build/lib/lmfit/minimizer.py -> build/bdist.linux-x86_64/wheel/./lmfit
running install_egg_info
running egg_info
writing lmfit.egg-info/PKG-INFO
writing dependency_links to lmfit.egg-info/dependency_links.txt
writing requirements to lmfit.egg-info/requires.txt
writing top-level names to lmfit.egg-info/top_level.txt
reading manifest file 'lmfit.egg-info/SOURCES.txt'
adding license file 'LICENSE'
adding license file 'AUTHORS.txt'
writing manifest file 'lmfit.egg-info/SOURCES.txt'
Copying lmfit.egg-info to build/bdist.linux-x86_64/wheel/./lmfit-1.2.2.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/lmfit-1.2.2.dist-info/WHEEL
creating
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/.tmp-kpqmj6yc/lmfit-1.2.2-py3-none-any.whl'
and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'lmfit/__init__.py'
adding 'lmfit/_ampgo.py'
adding 'lmfit/conf_emcee.py'
adding 'lmfit/confidence.py'
adding 'lmfit/jsonutils.py'
adding 'lmfit/lineshapes.py'
adding 'lmfit/minimizer.py'
adding 'lmfit/model.py'
adding 'lmfit/models.py'
adding 'lmfit/parameter.py'
adding 'lmfit/printfuncs.py'
adding 'lmfit/version.py'
adding 'lmfit-1.2.2.dist-info/AUTHORS.txt'
adding 'lmfit-1.2.2.dist-info/LICENSE'
adding 'lmfit-1.2.2.dist-info/METADATA'
adding 'lmfit-1.2.2.dist-info/WHEEL'
adding 'lmfit-1.2.2.dist-info/top_level.txt'
adding 'lmfit-1.2.2.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Successfully built lmfit-1.2.2-py3-none-any.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with
"installer" module
dh_auto_test -O--buildsystem=pybuild
pybuild --test --test-pytest -i python{version} -p "3.13 3.12"
I: pybuild pybuild:308: cp -r NIST_STRD examples
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_lmfit/build
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_lmfit/build;
python3.13 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>
configfile: setup.cfg
plugins: typeguard-4.4.1, cov-5.0.0
collected 654 items
tests/test_1variable.py . [ 0%]
tests/test_NIST_Strd.py ........................... [ 4%]
tests/test_algebraic_constraint.py .... [ 4%]
tests/test_ampgo.py ............ [ 6%]
tests/test_basicfit.py . [ 6%]
tests/test_basinhopping.py ..... [ 7%]
tests/test_bounded_jacobian.py .. [ 7%]
tests/test_bounds.py . [ 8%]
tests/test_brute.py ............ [ 9%]
tests/test_builtin_models.py ....... [ 11%]
tests/test_confidence.py ............. [ 12%]
tests/test_covariance_matrix.py ..ssssssss. [ 14%]
tests/test_custom_independentvar.py . [ 14%]
tests/test_default_kws.py . [ 14%]
tests/test_dual_annealing.py ... [ 15%]
tests/test_itercb.py .................... [ 18%]
tests/test_jsonutils.py ................. [ 21%]
tests/test_least_squares.py ..... [ 21%]
tests/test_lineshapes.py ............................................... [ 29%]
.......................................... [ 35%]
tests/test_manypeaks_speed.py . [ 35%]
tests/test_max_nfev.py ........................... [ 39%]
tests/test_minimizer.py ............... [ 42%]
tests/test_model.py .................................................... [ 50%]
........................................................................ [ 61%]
.....s....s............................................. [ 69%]
tests/test_model_saveload.py ...................... [ 72%]
tests/test_model_uncertainties.py ..... [ 73%]
tests/test_models.py ........ [ 74%]
tests/test_multidatasets.py . [ 75%]
tests/test_nose.py ...................s...... [ 79%]
tests/test_pandas.py .. [ 79%]
tests/test_parameter.py ................................................ [ 86%]
.......... [ 88%]
tests/test_parameters.py ............................... [ 92%]
tests/test_params_uvars.py ... [ 93%]
tests/test_printfuncs.py ............................s...... [ 98%]
tests/test_shgo.py ...... [ 99%]
tests/test_stepmodel.py .. [100%]
=============================== warnings summary ===============================
tests/test_manypeaks_speed.py:15
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_lmfit/build/tests/test_manypeaks_speed.py:15:
PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can
register custom marks to avoid this warning - for details, see
https://docs.pytest.org/en/stable/how-to/mark.html
@pytest.mark.flaky(max_runs=5)
.pybuild/cpython3_3.13_lmfit/build/tests/test_jsonutils.py::test_encode_decode_pandas
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_lmfit/build/lmfit/jsonutils.py:130:
FutureWarning: Passing literal json to 'read_json' is deprecated and will be
removed in a future version. To read from a literal string, wrap it in a
'StringIO' object.
out = read_json(obj['value'])
.pybuild/cpython3_3.13_lmfit/build/tests/test_jsonutils.py::test_encode_decode_pandas
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_lmfit/build/lmfit/jsonutils.py:132:
FutureWarning: Passing literal json to 'read_json' is deprecated and will be
removed in a future version. To read from a literal string, wrap it in a
'StringIO' object.
out = read_json(obj['value'], typ='series')
.pybuild/cpython3_3.13_lmfit/build/tests/test_model.py::test_coercion_of_input_data[pandas-complex]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_lmfit/build/lmfit/model.py:818:
FutureWarning: Series.ravel is deprecated. The underlying array is already 1D,
so ravel is not necessary. Use `to_numpy()` for conversion to a numpy array
instead.
diff = diff.ravel().view(float)
.pybuild/cpython3_3.13_lmfit/build/tests/test_model.py::test_make_params_valuetypes
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_lmfit/build/lmfit/model.py:686:
ComplexWarning: Casting complex values to real discards the imaginary part
dval = {'value': float(val)}
.pybuild/cpython3_3.13_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_coerce_float64
.pybuild/cpython3_3.13_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_scalar_minimizers
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_lmfit/build/lmfit/minimizer.py:979:
OptimizeWarning: Unknown solver options: maxiter
ret = scipy_minimize(self.penalty, variables, **fmin_kws)
.pybuild/cpython3_3.13_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee
/usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee of <tests.test_nose.CommonMinimizerTest
testMethod=test_emcee>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.13_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_bounds_length
/usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_bounds_length of
<tests.test_nose.CommonMinimizerTest testMethod=test_emcee_bounds_length>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.13_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_custom_pool
/usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_custom_pool of
<tests.test_nose.CommonMinimizerTest testMethod=test_emcee_custom_pool>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.13_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_float
/usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_float of <tests.test_nose.CommonMinimizerTest
testMethod=test_emcee_float>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.13_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_init_with_chain
/usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_init_with_chain of
<tests.test_nose.CommonMinimizerTest testMethod=test_emcee_init_with_chain>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.13_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_method_kwarg
/usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_method_kwarg of
<tests.test_nose.CommonMinimizerTest testMethod=test_emcee_method_kwarg>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.13_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_ntemps
/usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_ntemps of <tests.test_nose.CommonMinimizerTest
testMethod=test_emcee_ntemps>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.13_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_output
/usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_output of <tests.test_nose.CommonMinimizerTest
testMethod=test_emcee_output>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.13_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_partial_bounds
/usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_partial_bounds of
<tests.test_nose.CommonMinimizerTest testMethod=test_emcee_partial_bounds>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.13_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_reuse_sampler
/usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_reuse_sampler of
<tests.test_nose.CommonMinimizerTest testMethod=test_emcee_reuse_sampler>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.13_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_seed
/usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_seed of <tests.test_nose.CommonMinimizerTest
testMethod=test_emcee_seed>>)
return self.run(*args, **kwds)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
---------- coverage: platform linux, python 3.13.1-final-0 -----------
Coverage HTML written to dir htmlcov
================ 642 passed, 12 skipped, 18 warnings in 53.10s =================
I: pybuild pybuild:334: rm -fr
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_lmfit/build/NIST_STRD
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_lmfit/build/examples; find
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_lmfit/build -name "*.sav" -delete
I: pybuild pybuild:308: cp -r NIST_STRD examples
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build;
python3.12 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>
configfile: setup.cfg
plugins: typeguard-4.4.1, cov-5.0.0
collected 654 items
tests/test_1variable.py . [ 0%]
tests/test_NIST_Strd.py ........................... [ 4%]
tests/test_algebraic_constraint.py .... [ 4%]
tests/test_ampgo.py ............ [ 6%]
tests/test_basicfit.py . [ 6%]
tests/test_basinhopping.py ..... [ 7%]
tests/test_bounded_jacobian.py .. [ 7%]
tests/test_bounds.py . [ 8%]
tests/test_brute.py ............ [ 9%]
tests/test_builtin_models.py ....... [ 11%]
tests/test_confidence.py ............. [ 12%]
tests/test_covariance_matrix.py ..ssssssss. [ 14%]
tests/test_custom_independentvar.py . [ 14%]
tests/test_default_kws.py . [ 14%]
tests/test_dual_annealing.py ... [ 15%]
tests/test_itercb.py .................... [ 18%]
tests/test_jsonutils.py ................. [ 21%]
tests/test_least_squares.py ..... [ 21%]
tests/test_lineshapes.py ............................................... [ 29%]
.......................................... [ 35%]
tests/test_manypeaks_speed.py . [ 35%]
tests/test_max_nfev.py ........................... [ 39%]
tests/test_minimizer.py ............... [ 42%]
tests/test_model.py .................................................... [ 50%]
........................................................................ [ 61%]
.....s....s............................................. [ 69%]
tests/test_model_saveload.py ...................... [ 72%]
tests/test_model_uncertainties.py ..... [ 73%]
tests/test_models.py ........ [ 74%]
tests/test_multidatasets.py . [ 75%]
tests/test_nose.py ...................s...... [ 79%]
tests/test_pandas.py .. [ 79%]
tests/test_parameter.py ................................................ [ 86%]
.......... [ 88%]
tests/test_parameters.py ............................... [ 92%]
tests/test_params_uvars.py ... [ 93%]
tests/test_printfuncs.py ............................s...... [ 98%]
tests/test_shgo.py ...... [ 99%]
tests/test_stepmodel.py .. [100%]
=============================== warnings summary ===============================
tests/test_manypeaks_speed.py:15
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build/tests/test_manypeaks_speed.py:15:
PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can
register custom marks to avoid this warning - for details, see
https://docs.pytest.org/en/stable/how-to/mark.html
@pytest.mark.flaky(max_runs=5)
.pybuild/cpython3_3.12_lmfit/build/tests/test_jsonutils.py::test_encode_decode_pandas
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build/lmfit/jsonutils.py:130:
FutureWarning: Passing literal json to 'read_json' is deprecated and will be
removed in a future version. To read from a literal string, wrap it in a
'StringIO' object.
out = read_json(obj['value'])
.pybuild/cpython3_3.12_lmfit/build/tests/test_jsonutils.py::test_encode_decode_pandas
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build/lmfit/jsonutils.py:132:
FutureWarning: Passing literal json to 'read_json' is deprecated and will be
removed in a future version. To read from a literal string, wrap it in a
'StringIO' object.
out = read_json(obj['value'], typ='series')
.pybuild/cpython3_3.12_lmfit/build/tests/test_model.py::test_coercion_of_input_data[pandas-complex]
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build/lmfit/model.py:818:
FutureWarning: Series.ravel is deprecated. The underlying array is already 1D,
so ravel is not necessary. Use `to_numpy()` for conversion to a numpy array
instead.
diff = diff.ravel().view(float)
.pybuild/cpython3_3.12_lmfit/build/tests/test_model.py::test_make_params_valuetypes
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build/lmfit/model.py:686:
ComplexWarning: Casting complex values to real discards the imaginary part
dval = {'value': float(val)}
.pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_coerce_float64
.pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_scalar_minimizers
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build/lmfit/minimizer.py:979:
OptimizeWarning: Unknown solver options: maxiter
ret = scipy_minimize(self.penalty, variables, **fmin_kws)
.pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee
/usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee of <tests.test_nose.CommonMinimizerTest
testMethod=test_emcee>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_bounds_length
/usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_bounds_length of
<tests.test_nose.CommonMinimizerTest testMethod=test_emcee_bounds_length>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_custom_pool
/usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_custom_pool of
<tests.test_nose.CommonMinimizerTest testMethod=test_emcee_custom_pool>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_float
/usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_float of <tests.test_nose.CommonMinimizerTest
testMethod=test_emcee_float>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_init_with_chain
/usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_init_with_chain of
<tests.test_nose.CommonMinimizerTest testMethod=test_emcee_init_with_chain>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_method_kwarg
/usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_method_kwarg of
<tests.test_nose.CommonMinimizerTest testMethod=test_emcee_method_kwarg>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_ntemps
/usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_ntemps of <tests.test_nose.CommonMinimizerTest
testMethod=test_emcee_ntemps>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_output
/usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_output of <tests.test_nose.CommonMinimizerTest
testMethod=test_emcee_output>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_partial_bounds
/usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_partial_bounds of
<tests.test_nose.CommonMinimizerTest testMethod=test_emcee_partial_bounds>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_reuse_sampler
/usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_reuse_sampler of
<tests.test_nose.CommonMinimizerTest testMethod=test_emcee_reuse_sampler>>)
return self.run(*args, **kwds)
.pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_seed
/usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is
deprecated to return a value that is not None from a test case (<bound method
CommonMinimizerTest.test_emcee_seed of <tests.test_nose.CommonMinimizerTest
testMethod=test_emcee_seed>>)
return self.run(*args, **kwds)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
---------- coverage: platform linux, python 3.12.8-final-0 -----------
Coverage HTML written to dir htmlcov
================ 642 passed, 12 skipped, 18 warnings in 58.87s =================
I: pybuild pybuild:334: rm -fr
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build/NIST_STRD
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build/examples; find
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build -name "*.sav" -delete
rm -fr -- /tmp/dh-xdg-rundir-if2qQ_LZ
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
rm -f -- debian/python3-lmfit.substvars
debian/python-lmfit-doc.substvars
rm -fr -- debian/.debhelper/generated/python3-lmfit/
debian/python3-lmfit/ debian/tmp/ debian/.debhelper/generated/python-lmfit-doc/
debian/python-lmfit-doc/
dh_auto_install -O--buildsystem=pybuild
install -m0755 -d /<<PKGBUILDDIR>>/debian/tmp
pybuild --install -i python{version} -p "3.13 3.12" --dest-dir
/<<PKGBUILDDIR>>/debian/tmp
I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir
I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir
rm -f debian/python-lmfit-doc.debhelper.log
debian/python3-lmfit.debhelper.log
debian/rules override_dh_installdocs-indep
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mv examples/example_emcee_Model_interface.py
examples/nodoc_example_emcee_Model_interface.py
cp doc/sphinx/ext_mathjax.py doc/extensions.py
PYTHONPATH=. http_proxy='localhost' python3 -m sphinx -N -bhtml -D
mathjax_path="/usr/share/javascript/mathjax/MathJax.js" doc/ .pybuild/html #
HTML generator
Running Sphinx v8.1.3
loading translations [en]... done
making output directory... done
Using Sphinx-Gallery to convert rst text blocks to markdown for .ipynb files.
ERROR: Invalid target URI value `'https://matplotlib.org/stable/'` in
intersphinx_mapping['matplotlib'][0]. Target URIs must be unique (other
instance in intersphinx_mapping['scipy']).
Configuration error:
Invalid `intersphinx_mapping` configuration (1 error).
make[1]: *** [debian/rules:30: override_dh_installdocs-indep] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:15: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202412/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: lmfit-py
Source-Version: 1.2.2-4
Done: Alexandre Detiste <[email protected]>
We believe that the bug you reported is fixed in the latest version of
lmfit-py, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Alexandre Detiste <[email protected]> (supplier of updated lmfit-py package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 08 Jan 2025 12:03:40 +0100
Source: lmfit-py
Architecture: source
Version: 1.2.2-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Alexandre Detiste <[email protected]>
Closes: 1090242
Changes:
lmfit-py (1.2.2-4) unstable; urgency=medium
.
* Team upload.
* Fix bad copy-paste in intersphinx mapping (Closes: #1090242)
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