Your message dated Tue, 14 Jan 2025 14:57:53 +0000
with message-id <[email protected]>
and subject line Bug#1092058: fixed in ghmm 0.9~rc3-11
has caused the Debian Bug report #1092058,
regarding ghmm ftbfs with Python 3.13 as the default
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1092058: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1092058
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:ghmm
Version: 0.9~rc3-10
Severity: serious
Tags: sid trixie
User: [email protected]
Usertags: python3.13
ghmm ftbfs with Python 3.13 as the default
[...]
make[5]: Leaving directory '/<<PKGBUILDDIR>>/ghmmwrapper'
/usr/bin/python3 setup.py build
file ghmmwrapper.py (for module ghmmwrapper) not found
file ghmmwrapper.py (for module ghmmwrapper) not found
ghmmwrapper_wrap.c: In function ‘PythonCallBack’:
ghmmwrapper_wrap.c:3573:9: error: implicit declaration of function
‘PyEval_CallObject’; did you mean ‘PyObject_CallObject’?
[-Wimplicit-function-declaration]
3573 | PyEval_CallObject(func, arglist);
| ^~~~~~~~~~~~~~~~~
| PyObject_CallObject
ghmmwrapper_wrap.c: In function ‘delete_ghmm_alphabet’:
ghmmwrapper_wrap.c:3778:23: warning: comparison of integer expressions
of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
3778 | for(i=0; i<self->size; ++i)
| ^
ghmmwrapper_wrap.c: In function ‘ghmm_cmodel_getStateName’:
ghmmwrapper_wrap.c:4031:16: warning: the comparison will always evaluate
as ‘true’ for the pointer operand in ‘self->s + (sizetype)(index * 96)’
must not be NULL [-Waddress]
4031 | if((self->s + index) && index < self->N) return
(self->s + index)->desc;
| ^
ghmmwrapper_wrap.c:4031:43: warning: comparison of integer expressions
of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’
[-Wsign-compare]
4031 | if((self->s + index) && index < self->N) return
(self->s + index)->desc;
| ^
ghmmwrapper_wrap.c: In function ‘ghmm_dbackground_setName’:
ghmmwrapper_wrap.c:4064:20: warning: comparison of integer expressions
of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’
[-Wsign-compare]
4064 | if(index < self->n){
| ^
ghmmwrapper_wrap.c: In function ‘ghmm_dmodel_getStateName’:
ghmmwrapper_wrap.c:4112:16: warning: the comparison will always evaluate
as ‘true’ for the pointer operand in ‘self->s + (sizetype)(index * 80)’
must not be NULL [-Waddress]
4112 | if((self->s + index) && index < self->N) return
(self->s + index)->desc;
| ^
ghmmwrapper_wrap.c:4112:43: warning: comparison of integer expressions
of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’
[-Wsign-compare]
4112 | if((self->s + index) && index < self->N) return
(self->s + index)->desc;
| ^
ghmmwrapper_wrap.c: In function ‘int_matrix_alloc’:
ghmmwrapper_wrap.c:4223:28: warning: comparison of integer expressions
of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’}
[-Wsign-compare]
4223 | for (i=0; i<rows; ++i) mat[i] = malloc(cols *
sizeof(int));
| ^
ghmmwrapper_wrap.c: In function ‘int_matrix_free’:
ghmmwrapper_wrap.c:4230:28: warning: comparison of integer expressions
of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’}
[-Wsign-compare]
4230 | for (i=0; i<rows; ++i) free(mat[i]);
| ^
ghmmwrapper_wrap.c: In function ‘double_matrix_alloc’:
ghmmwrapper_wrap.c:4243:28: warning: comparison of integer expressions
of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’}
[-Wsign-compare]
4243 | for (i=0; i<rows; ++i) mat[i] = malloc(cols *
sizeof(double));
| ^
ghmmwrapper_wrap.c: In function ‘double_matrix_free’:
ghmmwrapper_wrap.c:4250:28: warning: comparison of integer expressions
of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’}
[-Wsign-compare]
4250 | for (i=0; i<rows; ++i) free(mat[i]);
| ^
ghmmwrapper_wrap.c: In function ‘_wrap_list2int_array’:
ghmmwrapper_wrap.c:26182:21: warning: comparison of integer expressions
of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’}
[-Wsign-compare]
26182 | for (i = 0; i < arg2; i++) {
| ^
ghmmwrapper_wrap.c: In function ‘_wrap_int_array2list’:
ghmmwrapper_wrap.c:26242:18: warning: comparison of integer expressions
of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’}
[-Wsign-compare]
26242 | for (i=0; i<*arg3; i++) {
| ^
ghmmwrapper_wrap.c: In function ‘_wrap_list2double_array’:
ghmmwrapper_wrap.c:26276:21: warning: comparison of integer expressions
of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’}
[-Wsign-compare]
26276 | for (i = 0; i < arg2; i++) {
| ^
ghmmwrapper_wrap.c: In function ‘_wrap_double_array2list’:
ghmmwrapper_wrap.c:26343:18: warning: comparison of integer expressions
of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’}
[-Wsign-compare]
26343 | for (i=0; i<*arg3; i++) {
| ^
error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1
make[4]: *** [Makefile:727: all] Error 1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/ghmmwrapper'
make[3]: *** [Makefile:536: all-recursive] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: *** [Makefile:446: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j4 returned exit code 2
make[1]: *** [debian/rules:17: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:10: binary] Error 2
--- End Message ---
--- Begin Message ---
Source: ghmm
Source-Version: 0.9~rc3-11
Done: Nilesh Patra <[email protected]>
We believe that the bug you reported is fixed in the latest version of
ghmm, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <[email protected]> (supplier of updated ghmm package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 14 Jan 2025 18:47:58 +0530
Source: ghmm
Architecture: source
Version: 0.9~rc3-11
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Nilesh Patra <[email protected]>
Closes: 1092058
Changes:
ghmm (0.9~rc3-11) unstable; urgency=medium
.
* Team Upload.
* Fixup build with python 3.13 (Closes: #1092058)
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