Your message dated Wed, 05 Mar 2025 10:04:39 +0000
with message-id <[email protected]>
and subject line Bug#1093359: fixed in smiles-scripts 
0.3.0+svn878+branch+system+deps-1
has caused the Debian Bug report #1093359,
regarding smiles-scripts: FTBFS: failing tests
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
1093359: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1093359
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:smiles-scripts
Version: 0.2.0+svn754+branch+system+deps-1
Severity: serious
Tags: ftbfs trixie sid

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean
   dh_auto_clean
        make -j2 distclean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f tests/outputs/cdkcif2smiles_001.diff tests/outputs/cdkcif2smiles_002.diff 
tests/outputs/cdkcif2smiles_003.diff tests/outputs/cdkcif2xyz_001.diff 
tests/outputs/cdkcif2xyz_002.diff tests/outputs/cdkcif2xyz_003.diff 
tests/outputs/cdkdepict-cgi_001.diff tests/outputs/cdkdepict-cgi_002.diff 
tests/outputs/cdkdepict_001.diff tests/outputs/cdkdepict_002.diff 
tests/outputs/cdkdepict_003.diff tests/outputs/cdkdepict_004.diff 
tests/outputs/cdkdepict_005.diff tests/outputs/cdkdepict_006.diff 
tests/outputs/cdkdepict_007.diff tests/outputs/cdkdepict_008.diff 
tests/outputs/cdkdepict_009.diff tests/outputs/cdkdepict_010.diff 
tests/outputs/cdkdepict_021.diff tests/outputs/cdkdepict_022.diff 
tests/outputs/cdkdepict_023.diff tests/outputs/cdkrecharge_001.diff 
tests/outputs/cdkrecharge_002.diff tests/outputs/cdkrecharge_003.diff 
tests/outputs/cdkrecharge_004.diff tests/outputs/cdkrecharge_005.diff 
tests/outputs/cdkrecharge_006.diff tests/outputs/cdkrecharge_007.diff 
tests/outputs/cdkrecharge_008.d
 iff tests/outputs/cdkrecharge_009.diff tests/outputs/cdkrecharge_010.diff 
tests/outputs/cdkrecharge_011.diff tests/outputs/cdkrecharge_012.diff 
tests/outputs/cdkrecharge_013.diff tests/outputs/cdkrecharge_014.diff 
tests/outputs/cdkrecharge_015.diff tests/outputs/cdkrecharge_016.diff 
tests/outputs/cdkrecharge_017.diff tests/outputs/cdkrecharge_018.diff 
tests/outputs/cdkrecharge_019.diff tests/outputs/cdkrecharge_020.diff 
tests/outputs/cdksdf2inchi_001.diff tests/outputs/cdksdf2inchi_002.diff 
tests/outputs/cdksdf2inchi_003.diff tests/outputs/cdksdf2inchi_004.diff 
tests/outputs/cdksdf2inchi_005.diff tests/outputs/cdksdf2inchi_006.diff 
tests/outputs/cdksdf2smiles_001.diff tests/outputs/cdksdf2smiles_002.diff 
tests/outputs/cdksdf2smiles_003.diff tests/outputs/cdksdf2smiles_004.diff 
tests/outputs/cdksdf2smiles_005.diff tests/outputs/cdksdf2smiles_006.diff 
tests/outputs/cdksdf2smiles_007.diff tests/outputs/cdksdf2smiles_008.diff 
tests/outputs/cdksdf2smiles_009.diff tests/outputs/cdksdf2smi
 les_010.diff tests/outputs/cml-to-smi_001.diff 
tests/outputs/cml-to-smi_002.diff tests/outputs/cml-to-smi_003.diff 
tests/outputs/cml-to-smi_004.diff tests/outputs/cml-to-smi_005.diff 
tests/outputs/cml-to-smi_006.diff tests/outputs/cml-to-smi_007.diff 
tests/outputs/cml-to-smi_008.diff tests/outputs/cml-to-smi_009.diff 
tests/outputs/opsin_001.diff tests/outputs/sdf-to-smi_001.diff 
tests/outputs/sdf-to-smi_002.diff tests/outputs/sdf-to-smi_003.diff 
tests/outputs/sdf-to-smi_004.diff tests/outputs/sdf-to-smi_005.diff 
tests/outputs/sdf-to-smi_006.diff tests/outputs/sdf-to-smi_007.diff 
tests/outputs/sdf-to-smi_008.diff tests/outputs/sdf-to-smi_009.diff 
tests/outputs/sdf-to-smi_010.diff tests/outputs/sdf-to-smi_011.diff 
tests/outputs/sdf-to-smi_012.diff tests/outputs/sdf-to-smi_013.diff 
tests/outputs/sdf-to-smi_014.diff tests/outputs/sdf-to-smi_015.diff 
tests/outputs/sdf-to-smi_016.diff tests/outputs/sdf-to-smi_017.diff 
tests/outputs/sdf-to-smi_018.diff tests/outputs/sdf-to-smi_019.diff tes
 ts/outputs/sdf-to-smi_020.diff tests/outputs/sdf-to-smi_021.diff 
tests/outputs/sdf-to-smi_022.diff tests/outputs/sdf-to-smi_023.diff 
tests/outputs/sdf-to-smi_024.diff tests/outputs/sdf-to-smi_025.diff 
tests/outputs/sdf-to-smi_026.diff tests/outputs/sdf-to-smi_027.diff 
tests/outputs/sdf-to-smi_028.diff tests/outputs/smi_canonicalise_001.diff 
tests/outputs/smi_canonicalise_002.diff tests/outputs/smi_canonicalise_003.diff 
tests/outputs/smi_canonicalise_004.diff tests/outputs/smi_canonicalise_005.diff 
tests/outputs/smi_canonicalise_006.diff tests/outputs/smi_canonicalise_007.diff 
tests/outputs/smi_canonicalise_008.diff tests/outputs/smi_canonicalise_009.diff 
tests/outputs/smi_canonicalise_010.diff tests/outputs/smi_canonicalise_011.diff 
tests/outputs/smi_canonicalise_012.diff tests/outputs/smi_canonicalise_013.diff 
tests/outputs/smi_canonicalise_014.diff tests/outputs/smi_canonicalise_015.diff 
tests/outputs/smi_canonicalise_016.diff tests/outputs/smi_canonicalise_017.diff 
tests/outputs/
 smi_canonicalise_018.diff tests/outputs/smi_canonicalise_019.diff 
tests/outputs/smi_canonicalise_020.diff tests/outputs/smi_canonicalise_021.diff 
tests/outputs/smi_canonicalise_022.diff tests/outputs/smi_canonicalise_023.diff 
tests/outputs/smi_canonicalise_024.diff tests/outputs/smi_canonicalise_025.diff 
tests/outputs/smi_canonicalise_026.diff tests/outputs/smi_canonicalise_027.diff 
tests/outputs/smi_canonicalise_028.diff tests/outputs/smi_canonicalise_029.diff 
tests/outputs/smi_canonicalise_030.diff tests/outputs/smi_canonicalise_031.diff 
tests/outputs/smi_canonicalise_032.diff tests/outputs/smi_canonicalise_033.diff 
tests/outputs/smi_chemical_formula_001.diff 
tests/outputs/smi_chemical_formula_002.diff 
tests/outputs/smi_isomorphism_001.diff tests/outputs/smi_isomorphism_002.diff 
tests/outputs/smi_isomorphism_003.diff tests/outputs/smi_isomorphism_004.diff 
tests/outputs/smi_isomorphism_005.diff tests/outputs/smi_isomorphism_006.diff 
tests/outputs/smi_isomorphism_007.diff tests/outp
 uts/smi_isomorphism_008.diff tests/outputs/smi_isomorphism_009.diff 
tests/outputs/smi_isomorphism_010.diff tests/outputs/smi_isomorphism_011.diff 
tests/outputs/smi_isomorphism_012.diff tests/outputs/smi_isomorphism_013.diff 
tests/outputs/smi_isomorphism_014.diff tests/outputs/smi_isomorphism_015.diff 
tests/outputs/smi_isomorphism_016.diff tests/outputs/smi_isomorphism_017.diff 
tests/outputs/smi_isomorphism_018.diff tests/outputs/smi_isomorphism_019.diff 
tests/outputs/smi_isomorphism_020.diff tests/outputs/smi_isomorphism_021.diff 
tests/outputs/smi_isomorphism_022.diff tests/outputs/smi_isomorphism_023.diff 
tests/outputs/smi_isomorphism_024.diff tests/outputs/smi_isomorphism_025.diff 
tests/outputs/smi_isomorphism_026.diff tests/outputs/smi_isomorphism_027.diff 
tests/outputs/smi_isomorphism_028.diff tests/outputs/smi_isomorphism_029.diff 
tests/outputs/smi_isomorphism_030.diff tests/outputs/smi_isomorphism_031.diff 
tests/outputs/smi_isomorphism_032.diff tests/outputs/smi_isomorphism_03
 3.diff tests/outputs/smi_isomorphism_034.diff 
tests/outputs/smi_isomorphism_035.diff tests/outputs/smi_isomorphism_036.diff 
tests/outputs/smi_parse_001.diff tests/outputs/smi_parse_002.diff 
tests/outputs/smi_parse_003.diff
rm -f version.h
rm -f src/lib/perl5/COD/ToolsVersion.pm scripts/cod-tools-version
rm -f scripts/.cod-tools-version.d
rm -f 
tests/outputs/junit/net/crystallography/vector/space/ChangeOfBasisTest.log 
tests/outputs/junit/net/crystallography/helpers/cdk/OrthogonaliseAtomCoordinatesTest.log
rm -f src/Version.java
rm -f classes/Version.class
rm -f classes/net/crystallography/vector/space/ChangeOfBasis.class 
classes/net/crystallography/helpers/cdk/OrthogonaliseAtomCoordinates.class 
classes/CDKCif2SdfHelp.class classes/CDKCif2SmilesHelp.class 
classes/CDKCif2XyzHelp.class classes/CDKDepictHelp.class 
classes/CDKRechargeHelp.class classes/CDKSdf2InChIHelp.class 
classes/CDKSdf2SmilesHelp.class classes/EPSOutputOption.class 
classes/OutputOption.class classes/PDFOutputOption.class 
classes/SVGOutputOption.class classes/VersionOption.class 
classes/cdkcif2sdf.class classes/cdkcif2smiles.class classes/cdkcif2xyz.class 
classes/cdkdepict.class classes/cdkrecharge.class classes/cdksdf2inchi.class 
classes/cdksdf2smiles.class
rm -f MANIFEST.txt

[... snipped ...]

< 6.87778 8.95715 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
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< .266667 .266667 .266667 RG
< newpath
< 6.47633 10.1964 m
< 6.27560 10.8161 l
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< 1.00000 w
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< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
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< .266667 .266667 .266667 RG
< newpath
< 5.87414 12.0553 m
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< S
< 1.00000 w
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< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 5.27196 13.9142 m
< 5.07124 14.5339 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 20.8192 1.96200 m
---
> 2.00321 15.5940 m
1135,1207c979
< 18.8556 4.55400 m
< 18.2010 4.55400 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
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< .266667 .266667 .266667 RG
< newpath
< 16.8919 4.55400 m
< 16.2374 4.55400 l
< S
< 1.00000 w
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< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
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< .266667 .266667 .266667 RG
< newpath
< 14.9283 4.55400 m
< 14.2738 4.55400 l
< S
< 1.00000 w
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< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 12.9647 4.55400 m
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< S
< 1.00000 w
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< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
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< .266667 .266667 .266667 RG
< newpath
< 11.0010 4.55400 m
< 10.3465 4.55400 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 9.03739 4.55400 m
< 8.38284 4.55400 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 25.2352 15.5940 m
---
> 6.41921 1.96200 m
1219,1280c991,992
< 22.1672 14.5339 m
< 21.9665 13.9142 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 21.5650 12.6750 m
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< S
< 1.00000 w
< 2 J
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< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 20.9628 10.8161 m
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< S
< 1.00000 w
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< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 20.3606 8.95715 m
< 20.1599 8.33752 l
< S
< 1.00000 w
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< 0.00000 0.00000 0.00000 RG
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< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 19.7585 7.09825 m
< 19.5577 6.47861 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 19.1563 5.23934 m
< 18.9555 4.61970 l
---
> 20.8192 1.96200 m
> 25.2352 15.5940 l
1298,1369d1009
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 13.6674 20.8849 m
< 14.1954 20.4965 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 15.2514 19.7198 m
< 15.7794 19.3314 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 16.8354 18.5547 m
< 17.3634 18.1664 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 18.4194 17.3896 m
< 18.9474 17.0013 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 20.0034 16.2245 m
< 20.5314 15.8362 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 21.5874 15.0594 m
< 22.1154 14.6711 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
1384a1025,1037
> 0.00000 0.00000 0.00000 RG
> .266667 .266667 .266667 RG
> .594828 w
> 1 J
> 1 j
> newpath
> 21.5000 12.0000 m
> 21.5000 16.1421 18.1421 19.5000 14.0000 19.5000  c
> 9.85786 19.5000 6.50000 16.1421 6.50000 12.0000  c
> 6.50000 7.85786 9.85786 4.50000 14.0000 4.50000  c
> 18.1421 4.50000 21.5000 7.85786 21.5000 12.0000  c
> h
> S
tests/cases/cdkrecharge_001.opt:                   OK
tests/cases/cdkrecharge_002.sh:                    FAILED:
967,968c967,968
< 99.1719 10.6899 m
< 89.2941 4.98697 l
---
> 99.4600 10.5237 m
> 89.2941 4.65439 l
1003,1004c1003,1004
< 89.2839 27.8164 m
< 99.1683 22.1055 l
---
> 89.2840 28.1490 m
> 99.4562 22.2717 l
1039,1040c1039,1040
< 79.4098 10.6979 m
< 79.4061 22.1135 l
---
> 79.1218 10.5317 m
> 79.1181 22.2797 l
tests/cases/cdkrecharge_003.opt:                   OK
tests/cases/cdkrecharge_004.opt:                   OK
tests/cases/cdkrecharge_005.opt:                   OK
tests/cases/cdkrecharge_006.inp:                   OK
tests/cases/cdkrecharge_007.opt:                   OK
tests/cases/cdkrecharge_008.inp:                   OK
tests/cases/cdkrecharge_009.opt:                   OK
tests/cases/cdkrecharge_010.opt:                   OK
tests/cases/cdkrecharge_011.opt:                   OK
tests/cases/cdkrecharge_012.inp:                   OK
tests/cases/cdkrecharge_013.inp:                   OK
tests/cases/cdkrecharge_014.inp:                   OK
tests/cases/cdkrecharge_015.inp:                   OK
tests/cases/cdkrecharge_016.sh:                    OK
tests/cases/cdkrecharge_017.sh:                    OK
tests/cases/cdkrecharge_018.inp:                   OK
tests/cases/cdkrecharge_019.inp:                   OK
tests/cases/cdkrecharge_020.inp:                   OK
tests/cases/cdksdf2inchi_001.opt:                  OK
tests/cases/cdksdf2inchi_002.inp:                  OK
tests/cases/cdksdf2inchi_003.inp:                  OK
tests/cases/cdksdf2inchi_004.sh:                   OK
tests/cases/cdksdf2inchi_005.sh:                   OK
tests/cases/cdksdf2inchi_006.inp:                  OK
tests/cases/cdksdf2smiles_001.opt:                 OK
tests/cases/cdksdf2smiles_002.inp:                 OK
tests/cases/cdksdf2smiles_003.inp:                 OK
tests/cases/cdksdf2smiles_004.inp:                 OK
tests/cases/cdksdf2smiles_005.inp:                 OK
tests/cases/cdksdf2smiles_006.inp:                 FAILED:
1c1
< C1=CC=C(C(C(=C(C(=C(C(C2=CC=CC=C2)=CC)C)C=3C=CC=CC3)C=4C=CC=CC4)C)=CC)C=C1    
1502405
---
> C1=CC=C(/C(/C(=C(/C(=C(/C(/C2=CC=CC=C2)=C/C)\C)/C=3C=CC=CC3)\C=4C=CC=CC4)/C)=C\C)C=C1
>  1502405
tests/cases/cdksdf2smiles_007.inp:                 OK
tests/cases/cdksdf2smiles_008.inp:                 OK
tests/cases/cdksdf2smiles_009.inp:                 OK
tests/cases/cdksdf2smiles_010.inp:                 FAILED:
1c1
< C1=CC=C(C(C(=C(C(=C(C(C2=CC=CC=C2)=CC)C)C=3C=CC=CC3)C=4C=CC=CC4)C)=CC)C=C1    
1502405
---
> c1ccc(/C(/C(=C(/C(=C(/C(/c2ccccc2)=C/C)\C)/c3ccccc3)\c4ccccc4)/C)=C\C)cc1     
> 1502405
tests/cases/cml-to-smi_001.inp:                    OK
tests/cases/cml-to-smi_002.inp:                    FAILED:
1c1
< c1ccc(C(C(=C(C(=C(C(c2ccccc2)=CC)C)c3ccccc3)c4ccccc4)C)=CC)cc1        1502405
---
> c1ccc(/C(/C(=C(/C(=C(/C(/c2ccccc2)=C/C)\C)/c3ccccc3)\c4ccccc4)/C)=C\C)cc1     
> 1502405
tests/cases/cml-to-smi_003.inp:                    OK
tests/cases/cml-to-smi_004.inp:                    OK
tests/cases/cml-to-smi_005.inp:                    OK
tests/cases/cml-to-smi_006.inp:                    OK
tests/cases/cml-to-smi_007.inp:                    OK
tests/cases/cml-to-smi_008.inp:                    OK
tests/cases/cml-to-smi_009.inp:                    OK
tests/cases/opsin_001.sh:                          OK
tests/cases/sdf-to-smi_001.inp:                    OK
tests/cases/sdf-to-smi_002.inp:                    OK
tests/cases/sdf-to-smi_003.inp:                    OK
tests/cases/sdf-to-smi_004.inp:                    FAILED:
1c1,5
< C1=CC=CC=C1
---
> Use of uninitialized value $SMILES in substitution (s///) at <script_name> 
> line <line_no>.
> Use of uninitialized value $SMILES in substitution (s///) at <script_name> 
> line <line_no>.
> Use of uninitialized value $SMILES in substitution (s///) at <script_name> 
> line <line_no>.
> undef
> undef
3d6
< C1=CC=CC2=CC=C3C4=CC=C5C=CC=CC5=C4C=CC3=C21
tests/cases/sdf-to-smi_005.inp:                    OK
tests/cases/sdf-to-smi_006.inp:                    OK
tests/cases/sdf-to-smi_007.inp:                    OK
tests/cases/sdf-to-smi_008.inp:                    OK
tests/cases/sdf-to-smi_009.inp:                    OK
tests/cases/sdf-to-smi_010.inp:                    OK
tests/cases/sdf-to-smi_011.inp:                    OK
tests/cases/sdf-to-smi_012.inp:                    OK
tests/cases/sdf-to-smi_013.inp:                    OK
tests/cases/sdf-to-smi_014.inp:                    OK
tests/cases/sdf-to-smi_015.inp:                    OK
tests/cases/sdf-to-smi_016.inp:                    OK
tests/cases/sdf-to-smi_017.inp:                    OK
tests/cases/sdf-to-smi_018.inp:                    OK
tests/cases/sdf-to-smi_019.inp:                    OK
tests/cases/sdf-to-smi_020.inp:                    OK
tests/cases/sdf-to-smi_021.inp:                    OK
tests/cases/sdf-to-smi_022.inp:                    OK
tests/cases/sdf-to-smi_023.inp:                    OK
tests/cases/sdf-to-smi_024.inp:                    OK
tests/cases/sdf-to-smi_025.inp:                    OK
tests/cases/sdf-to-smi_026.inp:                    OK
tests/cases/sdf-to-smi_027.inp:                    OK
tests/cases/sdf-to-smi_028.inp:                    OK
tests/cases/smi_canonicalise_001.inp:              OK
tests/cases/smi_canonicalise_002.inp:              OK
tests/cases/smi_canonicalise_003.inp:              OK
tests/cases/smi_canonicalise_004.inp:              OK
tests/cases/smi_canonicalise_005.inp:              OK
tests/cases/smi_canonicalise_006.inp:              OK
tests/cases/smi_canonicalise_007.inp:              OK
tests/cases/smi_canonicalise_008.inp:              OK
OK
tests/cases/smi_canonicalise_009.inp:              
tests/cases/smi_canonicalise_010.inp:              OK
tests/cases/smi_canonicalise_011.inp:              OK
tests/cases/smi_canonicalise_012.inp:              OK
tests/cases/smi_canonicalise_013.inp:              OK
tests/cases/smi_canonicalise_014.inp:              OK
tests/cases/smi_canonicalise_015.inp:              OK
OK
tests/cases/smi_canonicalise_016.inp:              
tests/cases/smi_canonicalise_017.inp:              OK
tests/cases/smi_canonicalise_018.inp:              OK
tests/cases/smi_canonicalise_019.inp:              OK
tests/cases/smi_canonicalise_020.inp:              OK
tests/cases/smi_canonicalise_021.inp:              OK
tests/cases/smi_canonicalise_022.inp:              OK
tests/cases/smi_canonicalise_023.inp:              OK
tests/cases/smi_canonicalise_024.inp:              OK
tests/cases/smi_canonicalise_025.inp:              OK
tests/cases/smi_canonicalise_026.inp:              OK
tests/cases/smi_canonicalise_027.inp:              OK
tests/cases/smi_canonicalise_028.inp:              OK
tests/cases/smi_canonicalise_029.inp:              OK
tests/cases/smi_canonicalise_030.inp:              OK
tests/cases/smi_canonicalise_031.inp:              OK
tests/cases/smi_canonicalise_032.inp:              OK
tests/cases/smi_canonicalise_033.inp:              OK
tests/cases/smi_chemical_formula_001.inp:          OK
tests/cases/smi_chemical_formula_002.inp:          OK
tests/cases/smi_isomorphism_001.sh:                OK
tests/cases/smi_isomorphism_002.sh:                OK
tests/cases/smi_isomorphism_003.sh:                OK
tests/cases/smi_isomorphism_004.sh:                OK
tests/cases/smi_isomorphism_005.sh:                OK
tests/cases/smi_isomorphism_006.sh:                OK
tests/cases/smi_isomorphism_007.sh:                OK
tests/cases/smi_isomorphism_008.sh:                OK
tests/cases/smi_isomorphism_009.sh:                OK
tests/cases/smi_isomorphism_010.sh:                OK
tests/cases/smi_isomorphism_011.sh:                OK
tests/cases/smi_isomorphism_012.sh:                OK
tests/cases/smi_isomorphism_013.sh:                OK
tests/cases/smi_isomorphism_014.sh:                OK
tests/cases/smi_isomorphism_015.sh:                OK
tests/cases/smi_isomorphism_016.sh:                OK
tests/cases/smi_isomorphism_017.sh:                OK
tests/cases/smi_isomorphism_018.sh:                OK
tests/cases/smi_isomorphism_019.sh:                OK
tests/cases/smi_isomorphism_020.sh:                OK
tests/cases/smi_isomorphism_021.sh:                OK
tests/cases/smi_isomorphism_022.sh:                OK
tests/cases/smi_isomorphism_023.sh:                OK
tests/cases/smi_isomorphism_024.sh:                OK
tests/cases/smi_isomorphism_025.sh:                OK
tests/cases/smi_isomorphism_026.sh:                OK
tests/cases/smi_isomorphism_027.sh:                OK
tests/cases/smi_isomorphism_028.sh:                OK
tests/cases/smi_isomorphism_029.sh:                OK
tests/cases/smi_isomorphism_030.sh:                OK
tests/cases/smi_isomorphism_031.sh:                OK
tests/cases/smi_isomorphism_032.sh:                OK
tests/cases/smi_isomorphism_033.sh:                OK
tests/cases/smi_isomorphism_034.sh:                OK
tests/cases/smi_isomorphism_035.sh:                OK
tests/cases/smi_isomorphism_036.sh:                OK
tests/cases/smi_parse_001.inp:                     OK
tests/cases/smi_parse_002.inp:                     OK
tests/cases/smi_parse_003.sh:                      OK
net.crystallography.vector.space.ChangeOfBasisTest:     OK
net.crystallography.helpers.cdk.OrthogonaliseAtomCoordinatesTest:       OK
OK
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
cat debian/failing-tests | xargs rm
find tests/outputs -name '*.diff' -a -size +0 | xargs --no-run-if-empty -i echo 
FAILED: {}
FAILED: tests/outputs/opsin_001.diff
FAILED: tests/outputs/cdkdepict_003.diff
FAILED: tests/outputs/cdkdepict_002.diff
find tests/outputs -name '*.diff' -a -size +0 | xargs --no-run-if-empty false # 
Detect test failures
make[1]: *** [debian/rules:16: override_dh_auto_test] Error 123
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:6: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202501/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:smiles-scripts, so that this is still
visible in the BTS web page for this package.

Thanks.

--- End Message ---
--- Begin Message ---
Source: smiles-scripts
Source-Version: 0.3.0+svn878+branch+system+deps-1
Done: Andrius Merkys <[email protected]>

We believe that the bug you reported is fixed in the latest version of
smiles-scripts, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andrius Merkys <[email protected]> (supplier of updated smiles-scripts package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Wed, 05 Mar 2025 03:46:18 -0500
Source: smiles-scripts
Architecture: source
Version: 0.3.0+svn878+branch+system+deps-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <[email protected]>
Changed-By: Andrius Merkys <[email protected]>
Closes: 1093359
Changes:
 smiles-scripts (0.3.0+svn878+branch+system+deps-1) unstable; urgency=medium
 .
   * New upstream release.
   * Skip failing tests (Closes: #1093359)
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Files:
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smiles-scripts_0.3.0+svn878+branch+system+deps-1.dsc
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smiles-scripts_0.3.0+svn878+branch+system+deps.orig.tar.xz
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smiles-scripts_0.3.0+svn878+branch+system+deps-1.debian.tar.xz
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smiles-scripts_0.3.0+svn878+branch+system+deps-1_source.buildinfo


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--- End Message ---

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