Source: openms Version: 2.6.0+cleaned1-4 Severity: serious User: [email protected] Usertags: cmake-4 Tags: ftbfs, forky, sid
Dear maintainer, During a test rebuild for CMake 4, openms failed to rebuild. Log Summary: ------------------------------------------------------------------------------- [...] //ADVANCED property for variable: CMAKE_INSTALL_MANDIR CMAKE_INSTALL_MANDIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_OLDINCLUDEDIR CMAKE_INSTALL_OLDINCLUDEDIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_RUNSTATEDIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_SBINDIR CMAKE_INSTALL_SBINDIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_SHAREDSTATEDIR CMAKE_INSTALL_SHAREDSTATEDIR-ADVANCED:INTERNAL=1 //Install .so files without execute permission. CMAKE_INSTALL_SO_NO_EXE:INTERNAL=1 //ADVANCED property for variable: CMAKE_INSTALL_SYSCONFDIR CMAKE_INSTALL_SYSCONFDIR-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_LINKER CMAKE_LINKER-ADVANCED:INTERNAL=1 //Name of CMakeLists files to read CMAKE_LIST_FILE_NAME:INTERNAL=CMakeLists.txt //ADVANCED property for variable: CMAKE_MAKE_PROGRAM CMAKE_MAKE_PROGRAM-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS CMAKE_MODULE_LINKER_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS_DEBUG CMAKE_MODULE_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_NM CMAKE_NM-ADVANCED:INTERNAL=1 //number of local generators CMAKE_NUMBER_OF_MAKEFILES:INTERNAL=3 //ADVANCED property for variable: CMAKE_OBJCOPY CMAKE_OBJCOPY-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_OBJDUMP CMAKE_OBJDUMP-ADVANCED:INTERNAL=1 //Platform information initialized CMAKE_PLATFORM_INFO_INITIALIZED:INTERNAL=1 //ADVANCED property for variable: CMAKE_RANLIB CMAKE_RANLIB-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_READELF CMAKE_READELF-ADVANCED:INTERNAL=1 //Path to CMake installation. CMAKE_ROOT:INTERNAL=/usr/share/cmake-4.1 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_DEBUG CMAKE_SHARED_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_RELEASE CMAKE_SHARED_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SKIP_INSTALL_RPATH CMAKE_SKIP_INSTALL_RPATH-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_SKIP_RPATH CMAKE_SKIP_RPATH-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS CMAKE_STATIC_LINKER_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_DEBUG CMAKE_STATIC_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_RELEASE CMAKE_STATIC_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_STRIP CMAKE_STRIP-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CMAKE_TAPI CMAKE_TAPI-ADVANCED:INTERNAL=1 //uname command CMAKE_UNAME:INTERNAL=/usr/bin/uname //ADVANCED property for variable: CMAKE_VERBOSE_MAKEFILE CMAKE_VERBOSE_MAKEFILE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: COMPRESSIONCOMMAND COMPRESSIONCOMMAND-ADVANCED:INTERNAL=1 //ADVANCED property for variable: COVERAGE_COMMAND COVERAGE_COMMAND-ADVANCED:INTERNAL=1 //ADVANCED property for variable: COVERAGE_EXTRA_FLAGS COVERAGE_EXTRA_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CTEST_SUBMIT_RETRY_COUNT CTEST_SUBMIT_RETRY_COUNT-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CTEST_SUBMIT_RETRY_DELAY CTEST_SUBMIT_RETRY_DELAY-ADVANCED:INTERNAL=1 //ADVANCED property for variable: DART_BUILD_ERROR_REPORT_LIMIT DART_BUILD_ERROR_REPORT_LIMIT-ADVANCED:INTERNAL=1 //ADVANCED property for variable: DART_BUILD_WARNING_REPORT_LIMIT DART_BUILD_WARNING_REPORT_LIMIT-ADVANCED:INTERNAL=1 //ADVANCED property for variable: DART_ROOT DART_ROOT-ADVANCED:INTERNAL=1 //ADVANCED property for variable: DART_TESTING_TIMEOUT DART_TESTING_TIMEOUT-ADVANCED:INTERNAL=1 //ADVANCED property for variable: DART_VERBOSE_BUILD DART_VERBOSE_BUILD-ADVANCED:INTERNAL=1 //ADVANCED property for variable: DELIVER_CONTINUOUS_EMAIL DELIVER_CONTINUOUS_EMAIL-ADVANCED:INTERNAL=1 //Details about finding OpenMP FIND_PACKAGE_MESSAGE_DETAILS_OpenMP:INTERNAL=[TRUE][TRUE][ ][v4.5()] //Details about finding OpenMP_C FIND_PACKAGE_MESSAGE_DETAILS_OpenMP_C:INTERNAL=[-fopenmp][/usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so][/usr/lib/aarch64-linux-gnu/libpthread.a][v4.5()] //Details about finding OpenMP_CXX FIND_PACKAGE_MESSAGE_DETAILS_OpenMP_CXX:INTERNAL=[-fopenmp][/usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so][/usr/lib/aarch64-linux-gnu/libpthread.a][v4.5()] //ADVANCED property for variable: GIT_EXECUTABLE GIT_EXECUTABLE-ADVANCED:INTERNAL=1 //ADVANCED property for variable: GUNZIPCOMMAND GUNZIPCOMMAND-ADVANCED:INTERNAL=1 //ADVANCED property for variable: JAVACOMMAND JAVACOMMAND-ADVANCED:INTERNAL=1 //ADVANCED property for variable: MAKECOMMAND MAKECOMMAND-ADVANCED:INTERNAL=1 //ADVANCED property for variable: MEMORYCHECK_COMMAND MEMORYCHECK_COMMAND-ADVANCED:INTERNAL=1 //ADVANCED property for variable: MEMORYCHECK_SUPPRESSIONS_FILE MEMORYCHECK_SUPPRESSIONS_FILE-ADVANCED:INTERNAL=1 //Architecture-bits OPENMS_64BIT_ARCHITECTURE:INTERNAL=1 //List of paths to be searched when the API documentation is generated OPENMS_DOCUMENTATION_DIRECTORIES:INTERNAL= //Result of TRY_COMPILE OpenMP_COMPILE_RESULT_CXX_fopenmp:INTERNAL=TRUE //Result of TRY_COMPILE OpenMP_COMPILE_RESULT_C_fopenmp:INTERNAL=TRUE //ADVANCED property for variable: OpenMP_CXX_FLAGS OpenMP_CXX_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: OpenMP_CXX_LIB_NAMES OpenMP_CXX_LIB_NAMES-ADVANCED:INTERNAL=1 //CXX compiler's OpenMP specification date OpenMP_CXX_SPEC_DATE:INTERNAL=201511 //ADVANCED property for variable: OpenMP_C_FLAGS OpenMP_C_FLAGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: OpenMP_C_LIB_NAMES OpenMP_C_LIB_NAMES-ADVANCED:INTERNAL=1 //C compiler's OpenMP specification date OpenMP_C_SPEC_DATE:INTERNAL=201511 //Result of TRY_COMPILE OpenMP_SPECTEST_CXX_:INTERNAL=TRUE //Result of TRY_COMPILE OpenMP_SPECTEST_C_:INTERNAL=TRUE //ADVANCED property for variable: OpenMP_gomp_LIBRARY OpenMP_gomp_LIBRARY-ADVANCED:INTERNAL=1 //ADVANCED property for variable: OpenMP_pthread_LIBRARY OpenMP_pthread_LIBRARY-ADVANCED:INTERNAL=1 //ADVANCED property for variable: SITE SITE-ADVANCED:INTERNAL=1 //Test WITH_FPIC WITH_FPIC:INTERNAL=1 //CMAKE_INSTALL_PREFIX during last run _GNUInstallDirs_LAST_CMAKE_INSTALL_PREFIX:INTERNAL=/usr //List of targets that will be exported. _OPENMS_EXPORT_TARGETS:INTERNAL= dh_auto_configure: error: cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DDEBIAN_BUILD=ON -DHAS_XSERVER=OFF -DCMAKE_FIND_LIBRARY_SUFFIXES=.so -DCMAKE_SKIP_RPATH=ON -DCMAKE_INSTALL_PREFIX=/usr -DOPENMS_CONTRIB_LIBS=/usr/lib\;/usr/lib/aarch64-linux-gnu -DCMAKE_BUILD_TYPE=release -DBOOST_USE_STATIC=OFF -DENABLE_STYLE_TESTING=OFF -DENABLE_TOPP_TESTING=OFF -DENABLE_CLASS_TESTING=OFF -DENABLE_PIPELINE_TESTING=OFF -DENABLE_TUTORIALS=ON -DSEQAN_INCLUDE_DIR=/build/reproducible-path/openms-2.6.0\+cleaned1/debian .. returned exit code 1 make[1]: *** [debian/rules:62: override_dh_auto_configure] Error 2 make[1]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1' make: *** [debian/rules:43: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2025-08-30T11:52:30Z ------------------------------------------------------------------------------- The above is just how the build ends and not necessarily the most relevant part. If required, the full build log is available here (for the next 30 days): https://debusine.debian.net/artifact/2406244/ The most likely cause of build failures is the removed backwards compatibility for CMake versions earlier than 3.5. You can find additional information in my debian-devel announcement: https://lists.debian.org/debian-devel/2025/04/msg00310.html About the archive rebuild: The build was made on debusine.debian.net, using sbuild. You can find the build task here: https://debusine.debian.net/work-request/154350/ If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks, Timo
