Source: diamond-aligner Version: 2.1.11-2 Severity: serious User: [email protected] Usertags: cmake-4 Tags: ftbfs, forky, sid
Dear maintainer, During a test rebuild for CMake 4, diamond-aligner failed to rebuild. Log Summary: ------------------------------------------------------------------------------- [...] Checksums-Sha1: 1e96180a43107a2cdfa3d5e902e871e9efa68187 4299560 diamond-aligner_2.1.11.orig.tar.xz 881ccbd0d81af2a8d33f4aa2816a956409f713a7 138004 diamond-aligner_2.1.11-2.debian.tar.xz Checksums-Sha256: 02959fe5a7135d6cad22d5253a7547a7b76b583ae6c4d8b1cfc1cb202898a55a 4299560 diamond-aligner_2.1.11.orig.tar.xz 28fbdffd1badf92cf3563400408b957635b84d7ae8af33894180341cfa0c5a6f 138004 diamond-aligner_2.1.11-2.debian.tar.xz Files: b8c3c9bed2fcd5599c3ac5527ee76fb1 4299560 diamond-aligner_2.1.11.orig.tar.xz aaffc68e4846e6fc4bc27be1fe31175c 138004 diamond-aligner_2.1.11-2.debian.tar.xz Dgit: b201d1044e17f4656801e34dd9b7682b848f00e1 debian archive/debian/2.1.11-2 https://git.dgit.debian.org/diamond-aligner -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmfNZSsUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrfUQ//dMzDgdsnT8LNELaVZj8c9DxEb8H+ zCuqtepII3h+VtKqzuif17yqdqJmwnJP0v4dFIDOilg62vQm8/RBHyL/CqgQwFnj UxAyoxgVEXcJs6m1zqEqVYuMTyp09nBzCNj4rN/Bm2D6qdOVgdkmw2iJzYzUsr3/ 0ixm67Uh5EkytcF43DEhCCRgmHeHyNE7aoSVTN4A8i4sZQhq/AgDEmAjjWod/1O/ wDeoDD7ksUNcTStqz2zg8A56ujoEaiowtl+c6vMpjD0rYy8avTsVesxLBhX6iyD9 NaA5hgJb1Bh+wD5pjaMkf8Suc1QiJUfPnYJNq0GYj0GiH4EvWSleIQnwS7dtiHY2 m10uBtpTw2edWISn7RwB1fAbmPMHNkkuXvgloaACM45nLA0WB2h8RuR8Sex+ejiq 7fxaIYVtJP6UHAbwA0dd+OCrU83VcVWnrzb5au52RTZw34M82DwsdY7unrWBHqVk lY1un6CgM3xiSGy/ZVgHxlXaP/ma8QhAq0Dy/JIdIikK7ufoqKzUZ9hIxnjFF1f1 5JEZGr6XhL87Fi2L1OCQB+zskgSaClDfQO6xX9HWCsAnScCWxRkNK3Ma7u/BHSsG lDLeOWo0K6Kn4CkMZLc4vsvr6KRVYB5Ct4xtM7CCbQ2UhZHXBpabp/8cVFvrIhJm 2WPrWpr1/03Ky4M= =zB9T -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./diamond-aligner_2.1.11-2.dsc: no acceptable signature found dpkg-source: info: extracting diamond-aligner in /build/reproducible-path/diamond-aligner-2.1.11 dpkg-source: info: unpacking diamond-aligner_2.1.11.orig.tar.xz dpkg-source: info: unpacking diamond-aligner_2.1.11-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying typo.patch dpkg-source: info: applying fix_missing_cstring_riscv64.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -b dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 2.1.11-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier <[email protected]> dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11' dh_auto_configure -- -DX86=OFF -DCMAKE_BUILD_TYPE=Release cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DX86=OFF -DCMAKE_BUILD_TYPE=Release .. CMake Error at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 has been removed from CMake. Update the VERSION argument <min> value. Or, use the <min>...<max> syntax to tell CMake that the project requires at least <min> but has been updated to work with policies introduced by <max> or earlier. Or, add -DCMAKE_POLICY_VERSION_MINIMUM=3.5 to try configuring anyway. -- Configuring incomplete, errors occurred! cd obj-aarch64-linux-gnu && tail -v -n \+0 CMakeCache.txt ==> CMakeCache.txt <== # This is the CMakeCache file. # For build in directory: /build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu # It was generated by CMake: /usr/bin/cmake # You can edit this file to change values found and used by cmake. # If you do not want to change any of the values, simply exit the editor. # If you do want to change a value, simply edit, save, and exit the editor. # The syntax for the file is as follows: # KEY:TYPE=VALUE # KEY is the name of a variable in the cache. # TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!. # VALUE is the current value for the KEY. ######################## # EXTERNAL cache entries ######################## //No help, variable specified on the command line. CMAKE_BUILD_TYPE:UNINITIALIZED=Release //No help, variable specified on the command line. CMAKE_EXPORT_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON //No help, variable specified on the command line. CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON //Value Computed by CMake. CMAKE_FIND_PACKAGE_REDIRECTS_DIR:STATIC=/build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu/CMakeFiles/pkgRedirects //No help, variable specified on the command line. CMAKE_FIND_USE_PACKAGE_REGISTRY:UNINITIALIZED=OFF //No help, variable specified on the command line. CMAKE_INSTALL_LIBDIR:UNINITIALIZED=lib/aarch64-linux-gnu //No help, variable specified on the command line. CMAKE_INSTALL_LOCALSTATEDIR:UNINITIALIZED=/var //No help, variable specified on the command line. CMAKE_INSTALL_PREFIX:UNINITIALIZED=/usr //No help, variable specified on the command line. CMAKE_INSTALL_RUNSTATEDIR:UNINITIALIZED=/run //No help, variable specified on the command line. CMAKE_INSTALL_SYSCONFDIR:UNINITIALIZED=/etc //No help, variable specified on the command line. CMAKE_SKIP_INSTALL_ALL_DEPENDENCY:UNINITIALIZED=ON //No help, variable specified on the command line. CMAKE_VERBOSE_MAKEFILE:UNINITIALIZED=ON //No help, variable specified on the command line. FETCHCONTENT_FULLY_DISCONNECTED:UNINITIALIZED=ON //No help, variable specified on the command line. X86:UNINITIALIZED=OFF ######################## # INTERNAL cache entries ######################## //This is the directory where this CMakeCache.txt was created CMAKE_CACHEFILE_DIR:INTERNAL=/build/reproducible-path/diamond-aligner-2.1.11/obj-aarch64-linux-gnu //Major version of cmake used to create the current loaded cache CMAKE_CACHE_MAJOR_VERSION:INTERNAL=4 //Minor version of cmake used to create the current loaded cache CMAKE_CACHE_MINOR_VERSION:INTERNAL=1 //Patch version of cmake used to create the current loaded cache CMAKE_CACHE_PATCH_VERSION:INTERNAL=1 //Path to CMake executable. CMAKE_COMMAND:INTERNAL=/usr/bin/cmake //Path to cpack program executable. CMAKE_CPACK_COMMAND:INTERNAL=/usr/bin/cpack //Path to ctest program executable. CMAKE_CTEST_COMMAND:INTERNAL=/usr/bin/ctest //Name of external makefile project generator. CMAKE_EXTRA_GENERATOR:INTERNAL= //Name of generator. CMAKE_GENERATOR:INTERNAL=Unix Makefiles //Generator instance identifier. CMAKE_GENERATOR_INSTANCE:INTERNAL= //Name of generator platform. CMAKE_GENERATOR_PLATFORM:INTERNAL= //Name of generator toolset. CMAKE_GENERATOR_TOOLSET:INTERNAL= //Source directory with the top level CMakeLists.txt file for this // project CMAKE_HOME_DIRECTORY:INTERNAL=/build/reproducible-path/diamond-aligner-2.1.11 //Name of CMakeLists files to read CMAKE_LIST_FILE_NAME:INTERNAL=CMakeLists.txt //number of local generators CMAKE_NUMBER_OF_MAKEFILES:INTERNAL=1 //Path to CMake installation. CMAKE_ROOT:INTERNAL=/usr/share/cmake-4.1 dh_auto_configure: error: cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DX86=OFF -DCMAKE_BUILD_TYPE=Release .. returned exit code 1 make[1]: *** [debian/rules:19: override_dh_auto_configure] Error 2 make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11' make: *** [debian/rules:16: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2025-08-29T16:49:13Z ------------------------------------------------------------------------------- The above is just how the build ends and not necessarily the most relevant part. If required, the full build log is available here (for the next 30 days): https://debusine.debian.net/artifact/2391110/ The most likely cause of build failures is the removed backwards compatibility for CMake versions earlier than 3.5. You can find additional information in my debian-devel announcement: https://lists.debian.org/debian-devel/2025/04/msg00310.html About the archive rebuild: The build was made on debusine.debian.net, using sbuild. You can find the build task here: https://debusine.debian.net/work-request/152698/ If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks, Timo
