Your message dated Sat, 11 Oct 2025 15:33:43 +0200
with message-id <[email protected]>
and subject line python-fitsio: FTBFS with NumPy 2.3
has caused the Debian Bug report #1114716,
regarding python-fitsio: FTBFS with NumPy 2.3
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1114716: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1114716
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: python-fitsio
Version: 1.2.6+dfsg-1
Severity: important
User: [email protected]
Usertags: numpy2.3
Tags: ftbfs, forky, sid
Dear maintainer,
During a test rebuild for NumPy 2.3, python-fitsio failed to rebuild.
Log Summary:
-------------------------------------------------------------------------------
[...]
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX
license expression:
License :: OSI Approved :: GNU General Public License (GPL)
See
https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license
for details.
********************************************************************************
!!
self._finalize_license_expression()
running build
running build_py
creating
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio
copying fitsio/util.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio
copying fitsio/fits_exceptions.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio
copying fitsio/fitslib.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio
copying fitsio/__init__.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio
copying fitsio/header.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio
creating
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/hdu
copying fitsio/hdu/image.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/hdu
copying fitsio/hdu/__init__.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/hdu
copying fitsio/hdu/base.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/hdu
copying fitsio/hdu/table.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/hdu
creating
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/tests
copying fitsio/tests/test_lib.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/tests
copying fitsio/tests/test_header.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/tests
copying fitsio/tests/test_warnings.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/tests
copying fitsio/tests/test_image.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/tests
copying fitsio/tests/test_table.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/tests
copying fitsio/tests/makedata.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/tests
copying fitsio/tests/test_header_junk.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/tests
copying fitsio/tests/checks.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/tests
copying fitsio/tests/__init__.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/tests
copying fitsio/tests/test_empty_slice.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/tests
copying fitsio/tests/test_image_compression.py ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/tests
running egg_info
creating fitsio.egg-info
writing fitsio.egg-info/PKG-INFO
writing dependency_links to fitsio.egg-info/dependency_links.txt
writing requirements to fitsio.egg-info/requires.txt
writing top-level names to fitsio.egg-info/top_level.txt
writing manifest file 'fitsio.egg-info/SOURCES.txt'
reading manifest file 'fitsio.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*' under directory 'cfitsio-4.4.1-20240617'
adding license file 'LICENSE.txt'
writing manifest file 'fitsio.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning:
Package 'fitsio.test_images' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'fitsio.test_images' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to
distribute this
package, please make sure that 'fitsio.test_images' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation
page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'fitsio.test_images' to be distributed and are
already explicitly excluding 'fitsio.test_images' via
`find_namespace_packages(...)/find_namespace` or
`find_packages(...)/find`,
you can try to use `exclude_package_data`, or
`include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools
documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
copying fitsio/fitsio_pywrap.c ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio
creating
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/test_images
copying fitsio/test_images/test_gzip_compressed_image.fits.fz ->
/build/reproducible-path/python-fitsio-1.2.6+dfsg/.pybuild/cpython3_3.13_fitsio/build/fitsio/test_images
running build_ext
building 'fitsio._fitsio_wrap' extension
creating build/temp.linux-x86_64-cpython-313/fitsio
x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/build/reproducible-path/python-fitsio-1.2.6+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-DFITSIO_PYWRAP_ALWAYS_NONSTANDARD_STRINGS
-I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include
-I/usr/include/python3.13 -c fitsio/fitsio_pywrap.c -o
build/temp.linux-x86_64-cpython-313/fitsio/fitsio_pywrap.o
fitsio/fitsio_pywrap.c: In function ‘write_var_num_column’:
fitsio/fitsio_pywrap.c:2359:9: error: ‘NPY_C_CONTIGUOUS’ undeclared (first use
in this function); did you mean ‘PyBUF_C_CONTIGUOUS’?
2359 | NPY_C_CONTIGUOUS
| ^~~~~~~~~~~~~~~~
| PyBUF_C_CONTIGUOUS
fitsio/fitsio_pywrap.c:2359:9: note: each undeclared identifier is reported
only once for each function it appears in
fitsio/fitsio_pywrap.c:2360:11: error: ‘NPY_ALIGNED’ undeclared (first use in
this function); did you mean ‘Py_ALIGNED’?
2360 | | NPY_ALIGNED
| ^~~~~~~~~~~
| Py_ALIGNED
fitsio/fitsio_pywrap.c:2361:11: error: ‘NPY_NOTSWAPPED’ undeclared (first use
in this function); did you mean ‘NPY_NOTYPE’?
2361 | | NPY_NOTSWAPPED
| ^~~~~~~~~~~~~~
| NPY_NOTYPE
fitsio/fitsio_pywrap.c:2362:11: error: ‘NPY_ELEMENTSTRIDES’ undeclared (first
use in this function); did you mean ‘NPY_ARRAY_ELEMENTSTRIDES’?
2362 | | NPY_ELEMENTSTRIDES;
| ^~~~~~~~~~~~~~~~~~
| NPY_ARRAY_ELEMENTSTRIDES
error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1
E: pybuild pybuild:389: build: plugin distutils failed with: exit code=1:
/usr/bin/python3 setup.py build --use-system-fitsio
dh_auto_build: error: pybuild --build -i python{version} -p 3.13 returned exit
code 13
make: *** [debian/rules:10: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2025-09-08T07:40:22Z
-------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here (for the next 30 days):
https://debusine.debian.net/debian/developers-roehling.numpy/artifact/2454763/
About the archive rebuild: The build was made on debusine.debian.net,
using sbuild.
You can find the build task here:
https://debusine.debian.net/debian/developers-roehling.numpy/work-request/163835/
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Cheers
Timo
--- End Message ---
--- Begin Message ---
Source: python-fitsio
Version: 1.2.8+dfsg-1
Done: [email protected]
This bug was fixed with 1.2.8+dfsg-1 (new upstream version), just forgot
to mention it in d/changelog.
Cheers
Ole
--- End Message ---
