Package: src:spoa Version: 4.1.5-1 Severity: serious Tags: ftbfs forky sid Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202602/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:spoa, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --no-parallel dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary dh binary --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/x86_64-linux-gnu/cmake/CpuFeatures -Dspoa_generate_dispatch=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/x86_64-linux-gnu/cmake/CpuFeatures -Dspoa_generate_dispatch=ON .. -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/share/cmake-4.2/Modules/FetchContent.cmake:1963 (message): Calling FetchContent_Populate(simde) is deprecated, call FetchContent_MakeAvailable(simde) instead. Policy CMP0169 can be set to OLD to allow FetchContent_Populate(simde) to be called directly for now, but the ability to call it with declared details will be removed completely in a future version. Call Stack (most recent call first): CMakeLists.txt:53 (FetchContent_Populate) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning at /usr/share/cmake-4.2/Modules/FetchContent.cmake:2121 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency simde to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/simde-src Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/share/cmake-4.2/Modules/FetchContent.cmake:1988:EVAL:1 (__FetchContent_Populate) /usr/share/cmake-4.2/Modules/FetchContent.cmake:1988 (cmake_language) CMakeLists.txt:53 (FetchContent_Populate) -- Configuring done (0.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY spoa_build_executable -- Build files have been written to: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_auto_build -O--no-parallel cd obj-x86_64-linux-gnu && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_avx2.dir/build.make CMakeFiles/spoa_avx2.dir/depend make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/spoa_avx2.dir/DependInfo.cmake "--color=" spoa_avx2 make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_avx2.dir/build.make CMakeFiles/spoa_avx2.dir/build make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 5%] Building CXX object CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -mavx2 -MD -MT CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o -MF CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o.d -o CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o -c /<<PKGBUILDDIR>>/src/simd_alignment_engine_dispatch.cpp make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 5%] Built target spoa_avx2 make -f CMakeFiles/spoa_sse4.1.dir/build.make CMakeFiles/spoa_sse4.1.dir/depend make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse4.1.dir/DependInfo.cmake "--color=" spoa_sse4.1 make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_sse4.1.dir/build.make CMakeFiles/spoa_sse4.1.dir/build make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 11%] Building CXX object CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -msse4.1 -MD -MT CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o -MF CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o.d -o CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o -c /<<PKGBUILDDIR>>/src/simd_alignment_engine_dispatch.cpp make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 11%] Built target spoa_sse4.1 make -f CMakeFiles/spoa_sse2.dir/build.make CMakeFiles/spoa_sse2.dir/depend make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse2.dir/DependInfo.cmake "--color=" spoa_sse2 make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_sse2.dir/build.make CMakeFiles/spoa_sse2.dir/build make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 17%] Building CXX object CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -msse2 -MD -MT CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o -MF CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o.d -o CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o -c /<<PKGBUILDDIR>>/src/simd_alignment_engine_dispatch.cpp make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 17%] Built target spoa_sse2 make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/depend make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/spoa.dir/DependInfo.cmake "--color=" spoa make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/build make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 23%] Building CXX object CMakeFiles/spoa.dir/src/alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -c /<<PKGBUILDDIR>>/src/alignment_engine.cpp [ 29%] Building CXX object CMakeFiles/spoa.dir/src/graph.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/graph.cpp.o -MF CMakeFiles/spoa.dir/src/graph.cpp.o.d -o CMakeFiles/spoa.dir/src/graph.cpp.o -c /<<PKGBUILDDIR>>/src/graph.cpp [ 35%] Building CXX object CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -MF CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o.d -o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -c /<<PKGBUILDDIR>>/src/simd_alignment_engine_dispatcher.cpp [ 41%] Building CXX object CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -c /<<PKGBUILDDIR>>/src/sisd_alignment_engine.cpp [ 47%] Building CXX object CMakeFiles/spoa.dir/src/version.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/version.cpp.o -MF CMakeFiles/spoa.dir/src/version.cpp.o.d -o CMakeFiles/spoa.dir/src/version.cpp.o -c /<<PKGBUILDDIR>>/src/version.cpp [ 52%] Linking CXX shared library lib/libspoa.so /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -shared -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/spoa.dir/link.d -Wl,-soname,libspoa.so.7.0.0 -o lib/libspoa.so.7.0.0 CMakeFiles/spoa.dir/src/alignment_engine.cpp.o CMakeFiles/spoa.dir/src/graph.cpp.o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o CMakeFiles/spoa.dir/src/version.cpp.o /usr/lib/x86_64-linux-gnu/libcpu_features.a -ldl /usr/bin/cmake -E cmake_symlink_library lib/libspoa.so.7.0.0 lib/libspoa.so.7.0.0 lib/libspoa.so make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 52%] Built target spoa make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/depend make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/spoa_static.dir/DependInfo.cmake "--color=" spoa_static make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/build make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 58%] Building CXX object CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/vendor/simde -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -c /<<PKGBUILDDIR>>/src/alignment_engine.cpp [ 64%] Building CXX object CMakeFiles/spoa_static.dir/src/graph.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/vendor/simde -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/graph.cpp.o -MF CMakeFiles/spoa_static.dir/src/graph.cpp.o.d -o CMakeFiles/spoa_static.dir/src/graph.cpp.o -c /<<PKGBUILDDIR>>/src/graph.cpp [ 70%] Building CXX object CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/vendor/simde -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -c /<<PKGBUILDDIR>>/src/sisd_alignment_engine.cpp [ 76%] Linking CXX static library lib/libspoa_static.a /usr/bin/cmake -P CMakeFiles/spoa_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_static.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libspoa_static.a CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/graph.cpp.o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o /usr/bin/ranlib lib/libspoa_static.a make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 76%] Built target spoa_static make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/depend make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/spoa_exe.dir/DependInfo.cmake "--color=" spoa_exe make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/build make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 82%] Building CXX object CMakeFiles/spoa_exe.dir/src/main.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_exe.dir/src/main.cpp.o -MF CMakeFiles/spoa_exe.dir/src/main.cpp.o.d -o CMakeFiles/spoa_exe.dir/src/main.cpp.o -c /<<PKGBUILDDIR>>/src/main.cpp [ 88%] Linking CXX executable bin/spoa /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/spoa_exe.dir/link.d CMakeFiles/spoa_exe.dir/src/main.cpp.o -o bin/spoa -Wl,-rpath,/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/lib: lib/libspoa.so.7.0.0 -lz /usr/lib/x86_64-linux-gnu/libcpu_features.a -ldl make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 88%] Built target spoa_exe make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/depend make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/spoa_test.dir/DependInfo.cmake "--color=" spoa_test make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/build make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 94%] Building CXX object CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/simde-src -isystem /usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -MF CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o.d -o CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -c /<<PKGBUILDDIR>>/test/spoa_test.cpp [100%] Linking CXX executable bin/spoa_test /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/spoa_test.dir/link.d CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -o bin/spoa_test -Wl,-rpath,/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/lib lib/libspoa.so.7.0.0 -lz /usr/lib/x86_64-linux-gnu/libcpu_features.a -ldl /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [100%] Built target spoa_test make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/<<PKGBUILDDIR>>' `find . -name spoa_test` Running main() from ./googletest/src/gtest_main.cc [==========] Running 22 tests from 2 test suites. [----------] Global test environment set-up. [----------] 3 tests from SpoaAlignmentTest [ RUN ] SpoaAlignmentTest.TypeError [ OK ] SpoaAlignmentTest.TypeError (0 ms) [ RUN ] SpoaAlignmentTest.EmptyInput [ OK ] SpoaAlignmentTest.EmptyInput (0 ms) [ RUN ] SpoaAlignmentTest.LargeInput [ OK ] SpoaAlignmentTest.LargeInput (0 ms) [----------] 3 tests from SpoaAlignmentTest (0 ms total) [----------] 19 tests from SpoaTest [ RUN ] SpoaTest.Clear [ OK ] SpoaTest.Clear (61 ms) [ RUN ] SpoaTest.Local [ OK ] SpoaTest.Local (31 ms) [ RUN ] SpoaTest.LocalAffine [ OK ] SpoaTest.LocalAffine (45 ms) [ RUN ] SpoaTest.LocalConvex [ OK ] SpoaTest.LocalConvex (50 ms) [ RUN ] SpoaTest.LocalWithQualities [ OK ] SpoaTest.LocalWithQualities (30 ms) [ RUN ] SpoaTest.LocalAffineWithQualities [ OK ] SpoaTest.LocalAffineWithQualities (45 ms) [ RUN ] SpoaTest.LocalConvexWithQualities [ OK ] SpoaTest.LocalConvexWithQualities (49 ms) [ RUN ] SpoaTest.Global [ OK ] SpoaTest.Global (30 ms) [ RUN ] SpoaTest.GlobalAffine [ OK ] SpoaTest.GlobalAffine (43 ms) [ RUN ] SpoaTest.GlobalConvex [ OK ] SpoaTest.GlobalConvex (48 ms) [ RUN ] SpoaTest.GlobalWithQualities [ OK ] SpoaTest.GlobalWithQualities (30 ms) [ RUN ] SpoaTest.GlobalAffineWithQualities [ OK ] SpoaTest.GlobalAffineWithQualities (43 ms) [ RUN ] SpoaTest.GlobalConvexWithQualities [ OK ] SpoaTest.GlobalConvexWithQualities (48 ms) [ RUN ] SpoaTest.SemiGlobal [ OK ] SpoaTest.SemiGlobal (29 ms) [ RUN ] SpoaTest.SemiGlobalAffine [ OK ] SpoaTest.SemiGlobalAffine (44 ms) [ RUN ] SpoaTest.SemiGlobalConvex [ OK ] SpoaTest.SemiGlobalConvex (48 ms) [ RUN ] SpoaTest.SemiGlobalWithQualities [ OK ] SpoaTest.SemiGlobalWithQualities (29 ms) [ RUN ] SpoaTest.SemiGlobalAffineWithQualities [ OK ] SpoaTest.SemiGlobalAffineWithQualities (43 ms) [ RUN ] SpoaTest.SemiGlobalConvexWithQualities [ OK ] SpoaTest.SemiGlobalConvexWithQualities (48 ms) [----------] 19 tests from SpoaTest (803 ms total) [----------] Global test environment tear-down [==========] 22 tests from 2 test suites ran. (803 ms total) [ PASSED ] 22 tests. `find . -name spoa | grep bin` test/data/sample.fastq.gz >Consensus LN:i:496 AATGATGCGCTTTGTTGGCGCGGTGGCTTGATGCAGGGGCTAATCGACCTCTGGCAACCACTTTTCCATGACAGGAGTTGAATATGGCATTCAGTAATCCCTTCGATGATCCGCAGGGAGCGTTTTACATATTGCGCAATGCGCAGGGGCAATTCAGTCTGTGGCCGCAACAATGCGTCTTACCGGCAGGCTGGGACATTGTGTGTCAGCCGCAGTCACAGGCGTCCTGCCAGCAGTGGCTGGAAGCCCACTGGCGTACTCTGACACCGACGAATTTTACCCAGTTGCAGGAGGCACAATGAGCCAGCATTTACCTTTGGTCGCCGCACAGCCCGGCATCTGGATGGCAGAAAAACTGTCAGAATTACCCTCCGCCTGGAGCGTGGCGCATTACGTTGAGTTAACCGGAGAGGTTGATTCGCCATTACTGGCCCGCGCGGTGGTTGCCGGACTAGCGCAAGCAGATACGCTTTACACGCGCAACCAAGGATTTCGG make[1]: Leaving directory '/<<PKGBUILDDIR>>' create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel dh_auto_install -O--no-parallel cd obj-x86_64-linux-gnu && make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so.7.0.0 -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa_static.a -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/spoa.hpp -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/graph.hpp -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/alignment_engine.hpp -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/version.hpp -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/spoa/spoaTargets.cmake -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/spoa/spoaTargets-release.cmake -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/spoa/spoaConfig.cmake -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/spoa/spoaConfigVersion.cmake -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/bin/spoa -- Set non-toolchain portion of runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/bin/spoa" to "" make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --exclude-a \ --movedev debian/tmp/usr/include/spoa usr/include \ --movedev debian/tmp/usr/lib/x86_64-linux-gnu/cmake /usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libspoa-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libspoa7.0.0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so debian/libspoa-dev/usr/lib/x86_64-linux-gnu mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so.7.0.0 debian/libspoa7.0.0/usr/lib/x86_64-linux-gnu PKGDEV=libspoa-dev PKGSHL=libspoa7.0.0 install -d -m 755 debian/libspoa-dev/usr/include mv debian/tmp/usr/include/spoa debian/libspoa-dev/usr/include install -d -m 755 debian/libspoa-dev//usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/cmake debian/libspoa-dev//usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_installdocs -O--no-parallel dh_installchangelogs -O--no-parallel dh_installexamples -O--no-parallel dh_installman -O--no-parallel dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_dwz -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libspoa7.0.0/DEBIAN/symbols does not match completely debian/libspoa7.0.0.symbols.amd64 --- debian/libspoa7.0.0.symbols.amd64 (libspoa7.0.0_4.1.5-1_amd64) +++ dpkg-gensymbolsAg564Y 2026-02-09 15:48:45.403228786 +0000 @@ -28,8 +28,8 @@ GetXCR0Eax@Base 4.0.7 StackLineReader_Initialize@Base 4.0.7 StackLineReader_NextLine@Base 4.0.7 - (optional)_ZGVN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE@Base 4.0.5 - (optional)_ZGVZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t@Base 4.0.5 +#MISSING: 4.1.5-1# (optional)_ZGVN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE@Base 4.0.5 +#MISSING: 4.1.5-1# (optional)_ZGVZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t@Base 4.0.5 _ZN4spoa15AlignmentEngine5AlignERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_5GraphEPi@Base 4.0.5 _ZN4spoa15AlignmentEngine6CreateENS_13AlignmentTypeEaaa@Base 4.0.5 _ZN4spoa15AlignmentEngine6CreateENS_13AlignmentTypeEaaaa@Base 4.0.5 @@ -120,10 +120,10 @@ _ZN4spoa5GraphD1Ev@Base 1.1.3 _ZN4spoa5GraphD2Ev@Base 1.1.3 _ZN4spoa7VersionB5cxx11Ev@Base 4.1.4 - (optional)_ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEv@Base 4.0.5 - (optional)_ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE@Base 4.0.5 - (optional)_ZN6cereal6detail18PolymorphicCastersD1Ev@Base 4.0.5 - (optional)_ZN6cereal6detail18PolymorphicCastersD2Ev@Base 4.0.5 +#MISSING: 4.1.5-1# (optional)_ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEv@Base 4.0.5 +#MISSING: 4.1.5-1# (optional)_ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE@Base 4.0.5 +#MISSING: 4.1.5-1# (optional)_ZN6cereal6detail18PolymorphicCastersD1Ev@Base 4.0.5 +#MISSING: 4.1.5-1# (optional)_ZN6cereal6detail18PolymorphicCastersD2Ev@Base 4.0.5 _ZNK4spoa15AlignmentEngine23WorstCaseAlignmentScoreEll@Base 4.0.5 _ZNK4spoa5Graph15ExtractSubgraphEPKNS0_4NodeES3_@Base 4.0.5 _ZNK4spoa5Graph15UpdateAlignmentERKSt6vectorIPKNS0_4NodeESaIS4_EEPS1_ISt4pairIiiESaISA_EE@Base 4.0.5 @@ -134,48 +134,50 @@ _ZNK4spoa5Graph8PrintDotERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 4.0.5 _ZNK4spoa5Graph8SubgraphEjjPSt6vectorIPKNS0_4NodeESaIS4_EE@Base 4.0.5 _ZNKSt5ctypeIcE8do_widenEc@Base 1.1.5 - (optional)_ZNSt10_HashtableISt10type_indexSt4pairIKS0_St13unordered_mapIS0_St6vectorIPKN6cereal6detail17PolymorphicCasterESaIS9_EESt4hashIS0_ESt8equal_toIS0_ESaIS1_IS2_SB_EEEESaISJ_ENSt8__detail10_Select1stESF_SD_NSL_18_Mod_range_hashingENSL_20_Default_ranged_hashENSL_20_Prime_rehash_policyENSL_17_Hashtable_traitsILb0ELb0ELb1EEEE5clearEv@Base 4.0.5 +#MISSING: 4.1.5-1# (optional)_ZNSt10_HashtableISt10type_indexSt4pairIKS0_St13unordered_mapIS0_St6vectorIPKN6cereal6detail17PolymorphicCasterESaIS9_EESt4hashIS0_ESt8equal_toIS0_ESaIS1_IS2_SB_EEEESaISJ_ENSt8__detail10_Select1stESF_SD_NSL_18_Mod_range_hashingENSL_20_Default_ranged_hashENSL_20_Prime_rehash_policyENSL_17_Hashtable_traitsILb0ELb0ELb1EEEE5clearEv@Base 4.0.5 (optional)_ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE15_M_emplace_uniqIJRKjEEESt4pairINS1_14_Node_iteratorIjLb1ELb0EEEbEDpOT_@Base 4.1.5 (optional)_ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE21_M_insert_unique_nodeEmmPNS1_10_Hash_nodeIjLb0EEEm@Base 4.1.4 _ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv@Base 1.1.3 - (optional)_ZNSt5dequeIPKN4spoa5Graph4NodeESaIS4_EE16_M_push_back_auxIJRKS4_EEEvDpOT_@Base 4.0.5 +#MISSING: 4.1.5-1# (optional)_ZNSt5dequeIPKN4spoa5Graph4NodeESaIS4_EE16_M_push_back_auxIJRKS4_EEEvDpOT_@Base 4.0.5 (optional)_ZNSt5dequeIPKN4spoa5Graph4NodeESaIS4_EE17_M_reallocate_mapEmb@Base 4.1.5 - (optional)_ZNSt5dequeIPN4spoa5Graph4NodeESaIS3_EE16_M_push_back_auxIJRKS3_EEEvDpOT_@Base 4.0.5 +#MISSING: 4.1.5-1# (optional)_ZNSt5dequeIPN4spoa5Graph4NodeESaIS3_EE16_M_push_back_auxIJRKS3_EEEvDpOT_@Base 4.0.5 _ZNSt5dequeIPN4spoa5Graph4NodeESaIS3_EE17_M_reallocate_mapEmb@Base 4.0.5 _ZNSt6vectorIN4spoa7StorageESaIS1_EE17_M_default_appendEm@Base 4.1.4 (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJRS5_EEEvDpOT_@Base 4.1.4 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.3 - _ZNSt6vectorIPKN4spoa5Graph4NodeESaIS4_EE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPS4_S6_EEmRKS4_@Base 4.0.5 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.3 +#MISSING: 4.1.5-1# _ZNSt6vectorIPKN4spoa5Graph4NodeESaIS4_EE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPS4_S6_EEmRKS4_@Base 4.0.5 (optional)_ZNSt6vectorIPN4spoa5Graph4EdgeESaIS3_EE17_M_realloc_appendIJS3_EEEvDpOT_@Base 4.1.4 - (optional)_ZNSt6vectorIPN4spoa5Graph4EdgeESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 4.0.5 - (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE12emplace_backIJRS3_EEEvDpOT_@Base 4.0.5 - (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE12emplace_backIJS3_EEEvDpOT_@Base 4.0.5 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIPN4spoa5Graph4EdgeESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 4.0.5 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE12emplace_backIJRS3_EEEvDpOT_@Base 4.0.5 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE12emplace_backIJS3_EEEvDpOT_@Base 4.0.5 (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE17_M_realloc_appendIJRKS3_EEEvDpOT_@Base 4.1.4 - (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE17_M_realloc_appendIJRS3_EEEvDpOT_@Base 4.1.4 - (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE17_M_realloc_insertIJRKS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 4.0.5 - (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EED1Ev@Base 4.1.4 - (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EED2Ev@Base 4.1.4 - (optional)_ZNSt6vectorISt10unique_ptrIN4spoa5Graph4EdgeESt14default_deleteIS3_EESaIS6_EE17_M_realloc_insertIJPS3_EEEvN9__gnu_cxx17__normal_iteratorIPS6_S8_EEDpOT_@Base 4.0.7 - (optional)_ZNSt6vectorISt10unique_ptrIN4spoa5Graph4NodeESt14default_deleteIS3_EESaIS6_EE17_M_realloc_insertIJPS3_EEEvN9__gnu_cxx17__normal_iteratorIPS6_S8_EEDpOT_@Base 4.0.5 - (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRjiEEEvDpOT_@Base 4.0.5 - (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJijEEEvDpOT_@Base 3.0.0 - (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjiEEEvDpOT_@Base 3.4.0 - (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjjEEEvDpOT_@Base 3.0.0 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE17_M_realloc_appendIJRS3_EEEvDpOT_@Base 4.1.4 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE17_M_realloc_insertIJRKS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 4.0.5 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EED1Ev@Base 4.1.4 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EED2Ev@Base 4.1.4 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt10unique_ptrIN4spoa5Graph4EdgeESt14default_deleteIS3_EESaIS6_EE17_M_realloc_insertIJPS3_EEEvN9__gnu_cxx17__normal_iteratorIPS6_S8_EEDpOT_@Base 4.0.7 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt10unique_ptrIN4spoa5Graph4NodeESt14default_deleteIS3_EESaIS6_EE17_M_realloc_insertIJPS3_EEEvN9__gnu_cxx17__normal_iteratorIPS6_S8_EEDpOT_@Base 4.0.5 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRjiEEEvDpOT_@Base 4.0.5 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJijEEEvDpOT_@Base 3.0.0 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjiEEEvDpOT_@Base 3.4.0 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjjEEEvDpOT_@Base 3.0.0 (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_appendIJRjiEEEvDpOT_@Base 4.1.4 - (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_appendIJijEEEvDpOT_@Base 4.1.4 - (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_appendIJjjEEEvDpOT_@Base 4.1.4 - (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJRjiEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 4.1.4 - (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJijEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 4.1.4 - _ZNSt6vectorIiSaIiEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPiS1_EEmRKi@Base 1.1.3 - (optional)_ZNSt6vectorIiSaIiEED1Ev@Base 4.1.4 - (optional)_ZNSt6vectorIiSaIiEED2Ev@Base 4.1.4 - (optional)_ZNSt6vectorIjSaIjEE12emplace_backIJjEEEvDpOT_@Base 3.4.0 - _ZNSt6vectorIjSaIjEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPjS1_EEmRKj@Base 1.1.3 - (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_appendIJiEEEvDpOT_@Base 4.1.4 - (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_appendIJjEEEvDpOT_@Base 4.1.4 - (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 4.0.5 - (optional)_ZNSt6vectorIjSaIjEED1Ev@Base 4.1.4 - (optional)_ZNSt6vectorIjSaIjEED2Ev@Base 4.1.4 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_appendIJijEEEvDpOT_@Base 4.1.4 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_appendIJjjEEEvDpOT_@Base 4.1.4 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJRjiEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 4.1.4 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJijEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 4.1.4 + _ZNSt6vectorIiSaIiEE14_M_fill_appendEmRKi@Base 4.1.5-1 +#MISSING: 4.1.5-1# _ZNSt6vectorIiSaIiEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPiS1_EEmRKi@Base 1.1.3 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIiSaIiEED1Ev@Base 4.1.4 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIiSaIiEED2Ev@Base 4.1.4 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIjSaIjEE12emplace_backIJjEEEvDpOT_@Base 3.4.0 + _ZNSt6vectorIjSaIjEE14_M_fill_appendEmRKj@Base 4.1.5-1 +#MISSING: 4.1.5-1# _ZNSt6vectorIjSaIjEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPjS1_EEmRKj@Base 1.1.3 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_appendIJiEEEvDpOT_@Base 4.1.4 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_appendIJjEEEvDpOT_@Base 4.1.4 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 4.0.5 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIjSaIjEED1Ev@Base 4.1.4 +#MISSING: 4.1.5-1# (optional)_ZNSt6vectorIjSaIjEED2Ev@Base 4.1.4 _ZTIN4spoa15AlignmentEngineE@Base 1.1.3 _ZTIN4spoa19SimdAlignmentEngineILNS_12ArchitectureE0EEE@Base 4.0.5 _ZTIN4spoa19SimdAlignmentEngineILNS_12ArchitectureE1EEE@Base 4.0.5 @@ -191,4 +193,4 @@ _ZTVN4spoa19SimdAlignmentEngineILNS_12ArchitectureE1EEE@Base 4.0.5 _ZTVN4spoa19SimdAlignmentEngineILNS_12ArchitectureE2EEE@Base 4.0.5 _ZTVN4spoa19SisdAlignmentEngineE@Base 1.1.3 - (optional)_ZZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t@Base 4.0.5 +#MISSING: 4.1.5-1# (optional)_ZZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t@Base 4.0.5 dh_makeshlibs: error: failing due to earlier errors make: *** [debian/rules:24: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 --------------------------------------------------------------------------------
