Package: src:r-cran-gprofiler2 Version: 0.2.4+dfsg-1 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202605/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:r-cran-gprofiler2, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R debian/rules execute_after_dh_auto_build make[1]: Entering directory '/<<PKGBUILDDIR>>' cd inst/doc && Rscript -e "require(knitr); require(markdown); knit('gprofiler2.Rmd', 'gprofiler2.md'); markdownToHTML('gprofiler2.md', 'gprofiler2.html', options=c('use_xhtml', 'base64_images'));" && rm -f gprofiler2.md Loading required package: knitr Loading required package: markdown processing file: gprofiler2.Rmd 1/69 2/69 [unnamed-chunk-1] 3/69 4/69 [unnamed-chunk-2] 5/69 6/69 [setup] 7/69 8/69 [unnamed-chunk-3] 9/69 10/69 [unnamed-chunk-4] 11/69 12/69 [unnamed-chunk-5] 13/69 14/69 [unnamed-chunk-6] 15/69 16/69 [unnamed-chunk-7] 17/69 18/69 [unnamed-chunk-8] 19/69 20/69 [unnamed-chunk-9] 21/69 22/69 [unnamed-chunk-10] 23/69 24/69 [unnamed-chunk-11] 25/69 26/69 [unnamed-chunk-12] 27/69 28/69 [unnamed-chunk-13] 29/69 30/69 [unnamed-chunk-14] 31/69 32/69 [unnamed-chunk-15] 33/69 34/69 [unnamed-chunk-16] 35/69 36/69 [unnamed-chunk-17] 37/69 38/69 [unnamed-chunk-18] 39/69 40/69 [unnamed-chunk-19] 41/69 42/69 [unnamed-chunk-20] 43/69 44/69 [unnamed-chunk-21] 45/69 46/69 [unnamed-chunk-22] 47/69 48/69 [unnamed-chunk-23] 49/69 50/69 [unnamed-chunk-24] 51/69 52/69 [unnamed-chunk-25] 53/69 54/69 [unnamed-chunk-26] 55/69 56/69 [unnamed-chunk-27] 57/69 58/69 [unnamed-chunk-28] 59/69 60/69 [unnamed-chunk-29] 61/69 62/69 [unnamed-chunk-30] 63/69 64/69 [unnamed-chunk-31] 65/69 66/69 [unnamed-chunk-32] 67/69 68/69 [unnamed-chunk-33] 69/69 output file: gprofiler2.md [1] "gprofiler2.md" Error in mark(..., format = "html", template = template) : Detected bibliography in YAML (gprofiler2.md) but the rbibutils package is unavailable. Please make sure it is installed (and declared in Suggests if bibliography is used in package vignettes). Calls: markdownToHTML -> mark_html -> mark Execution halted make[1]: *** [debian/rules:7: execute_after_dh_auto_build] Error 1 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:4: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 --------------------------------------------------------------------------------
