Your message dated Sun, 05 Jul 2026 21:34:08 +0000
with message-id <[email protected]>
and subject line Bug#1141163: fixed in ariba 2.14.7+ds-13
has caused the Debian Bug report #1141163,
regarding ariba: Autopkgtests fail: The following reads file(s) were not found
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1141163: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1141163
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: ariba
Version: 2.14.7+ds-12
Severity: serious
___________________________ Assembling each cluster ___________________________
Will run 1 cluster(s) in parallel
Not constructing cluster cluster because it only has 2 reads (1 of 9)
Constructing cluster cluster_1 (2 of 9)
Constructing cluster cluster_2 (3 of 9)
Constructing cluster cluster_3 (4 of 9)
Constructing cluster cluster_4 (5 of 9)
Constructing cluster gene (6 of 9)
Constructing cluster gene_1 (7 of 9)
Constructing cluster noncoding (8 of 9)
Constructing cluster noncoding_1 (9 of 9)
The following reads file(s) were not found:
reads_1.fq
reads_2.fq
Cannot continue
Traceback (most recent call last):
File "/usr/bin/ariba", line 312, in <module>
args.func(args)
~~~~~~~~~^^^^^^
File "/usr/lib/python3/dist-packages/ariba/tasks/run.py", line 65, in run
c.run()
~~~~~^^
File "/usr/lib/python3/dist-packages/ariba/clusters.py", line 612, in run
self._run()
~~~~~~~~~^^
File "/usr/lib/python3/dist-packages/ariba/clusters.py", line 637, in _run
self._init_and_run_clusters()
~~~~~~~~~~~~~~~~~~~~~~~~~~~^^
File "/usr/lib/python3/dist-packages/ariba/clusters.py", line 465, in
_init_and_run_clusters
manager = multiprocessing.Manager()
File "/usr/lib/python3.14/multiprocessing/context.py", line 57, in Manager
m.start()
~~~~~~~^^
File "/usr/lib/python3.14/multiprocessing/managers.py", line 566, in start
self._process.start()
~~~~~~~~~~~~~~~~~~~^^
File "/usr/lib/python3.14/multiprocessing/process.py", line 121, in start
self._popen = self._Popen(self)
~~~~~~~~~~~^^^^^^
File "/usr/lib/python3.14/multiprocessing/context.py", line 306, in _Popen
return Popen(process_obj)
File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 35, in
__init__
super().__init__(process_obj)
~~~~~~~~~~~~~~~~^^^^^^^^^^^^^
File "/usr/lib/python3.14/multiprocessing/popen_fork.py", line 20, in
__init__
self._launch(process_obj)
~~~~~~~~~~~~^^^^^^^^^^^^^
File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 51, in
_launch
self.sentinel, w = forkserver.connect_to_new_process(self._fds)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^
File "/usr/lib/python3.14/multiprocessing/forkserver.py", line 106, in
connect_to_new_process
connection.answer_challenge(
~~~~~~~~~~~~~~~~~~~~~~~~~~~^
wrapped_client, self._forkserver_authkey)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.14/multiprocessing/connection.py", line 995, in
answer_challenge
message = connection.recv_bytes(256) # reject large message
File "/usr/lib/python3.14/multiprocessing/connection.py", line 226, in
recv_bytes
buf = self._recv_bytes(maxlength)
File "/usr/lib/python3.14/multiprocessing/connection.py", line 451, in
_recv_bytes
buf = self._recv(4)
File "/usr/lib/python3.14/multiprocessing/connection.py", line 416, in _recv
chunk = read(handle, to_read)
ConnectionResetError: [Errno 104] Connection reset by peer
-- System Information:
Debian Release: forky/sid
APT prefers unstable-debug
APT policy: (500, 'unstable-debug'), (500, 'unstable'), (500, 'testing'),
(101, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 7.0.13+deb14-amd64 (SMP w/16 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=ru_RU.UTF-8, LC_CTYPE=ru_RU.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages ariba depends on:
pn bowtie2 <none>
pn cd-hit <none>
pn fastaq <none>
ii libc6 2.42-17
pn libfml0 <none>
ii libgcc-s1 16.1.0-2
pn libminimap0 <none>
ii libstdc++6 16.1.0-2
pn mash <none>
pn mummer <none>
ii python3 3.13.9-3+b1
pn python3-biopython <none>
ii python3-bs4 4.15.0-1
pn python3-dendropy <none>
ii python3-matplotlib 3.10.7+dfsg1-5
pn python3-pymummer <none>
pn python3-pysam <none>
ii python3-tk 3.14.6-1
ii zlib1g 1:1.3.dfsg+really1.3.2-3
ariba recommends no packages.
Versions of packages ariba suggests:
pn spades <none>
--- End Message ---
--- Begin Message ---
Source: ariba
Source-Version: 2.14.7+ds-13
Done: Sascha Steinbiss <[email protected]>
We believe that the bug you reported is fixed in the latest version of
ariba, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sascha Steinbiss <[email protected]> (supplier of updated ariba package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 05 Jul 2026 23:10:35 +0200
Source: ariba
Architecture: source
Version: 2.14.7+ds-13
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Sascha Steinbiss <[email protected]>
Closes: 1141163
Changes:
ariba (2.14.7+ds-13) unstable; urgency=medium
.
* Add patch to make code compatible with Python 3.14's multiprocessing.
(Closes: #1141163)
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