Package: src:jellyfish1 Version: 1.1.11-10 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202608/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:jellyfish1, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_clean if [ -d debian/tmp_save_tests ] ; then \ mv debian/tmp_save_tests/* tests ; \ rmdir debian/tmp_save_tests ; \ fi make[1]: Leaving directory '/<<PKGBUILDDIR>>' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf autoreconf: export WARNINGS= [... snipped ...] /usr/include/c++/16/istream:205:7: 205 | operator>>(long long& __n) | ^~~~~~~~ ⢠conversion of argument 1 would be ill-formed: ⢠error: invalid conversion from âchar*â to âlong long intâ [-fpermissive] jellyfish/query_main.cc:38:31: 38 | in >> std::setw(width) >> mer; | ^~~ | | | char* ⢠error: cannot bind rvalue â(long long int)((char*)(& mer))â to âlong long int&â ⢠candidate 9: âstd::basic_istream<_CharT, _Traits>::__istream_type& std::basic_istream<_CharT, _Traits>::operator>>(long long unsigned int&) [with _CharT = char; _Traits = std::char_traits<char>; __istream_type = std::basic_istream<char>]â (near match) /usr/include/c++/16/istream:209:7: 209 | operator>>(unsigned long long& __n) | ^~~~~~~~ ⢠conversion of argument 1 would be ill-formed: ⢠error: invalid conversion from âchar*â to âlong long unsigned intâ [-fpermissive] jellyfish/query_main.cc:38:31: 38 | in >> std::setw(width) >> mer; | ^~~ | | | char* ⢠error: cannot bind rvalue â(long long unsigned int)((char*)(& mer))â to âlong long unsigned int&â ⢠candidate 10: âstd::basic_istream<_CharT, _Traits>::__istream_type& std::basic_istream<_CharT, _Traits>::operator>>(void*&) [with _CharT = char; _Traits = std::char_traits<char>; __istream_type = std::basic_istream<char>]â (near match) /usr/include/c++/16/istream:334:7: 334 | operator>>(void*& __p) | ^~~~~~~~ ⢠conversion of argument 1 would be ill-formed: ⢠error: cannot bind non-const lvalue reference of type âvoid*&â to an rvalue of type âvoid*â jellyfish/query_main.cc:38:31: 38 | in >> std::setw(width) >> mer; | ^~~ ⢠candidate 11: âstd::basic_istream<_CharT, _Traits>::__istream_type& std::basic_istream<_CharT, _Traits>::operator>>(float&) [with _CharT = char; _Traits = std::char_traits<char>; __istream_type = std::basic_istream<char>]â /usr/include/c++/16/istream:225:7: 225 | operator>>(float& __f) | ^~~~~~~~ ⢠no known conversion for argument 1 from âchar [(width + 1)]â to âfloat&â /usr/include/c++/16/istream:225:25: 225 | operator>>(float& __f) | ~~~~~~~^~~ ⢠candidate 12: âstd::basic_istream<_CharT, _Traits>::__istream_type& std::basic_istream<_CharT, _Traits>::operator>>(double&) [with _CharT = char; _Traits = std::char_traits<char>; __istream_type = std::basic_istream<char>]â /usr/include/c++/16/istream:229:7: 229 | operator>>(double& __f) | ^~~~~~~~ ⢠no known conversion for argument 1 from âchar [(width + 1)]â to âdouble&â /usr/include/c++/16/istream:229:26: 229 | operator>>(double& __f) | ~~~~~~~~^~~ ⢠candidate 13: âstd::basic_istream<_CharT, _Traits>::__istream_type& std::basic_istream<_CharT, _Traits>::operator>>(long double&) [with _CharT = char; _Traits = std::char_traits<char>; __istream_type = std::basic_istream<char>]â /usr/include/c++/16/istream:233:7: 233 | operator>>(long double& __f) | ^~~~~~~~ ⢠no known conversion for argument 1 from âchar [(width + 1)]â to âlong double&â /usr/include/c++/16/istream:233:31: 233 | operator>>(long double& __f) | ~~~~~~~~~~~~~^~~ ⢠candidate 14: âstd::basic_istream<_CharT, _Traits>::__istream_type& std::basic_istream<_CharT, _Traits>::operator>>(__istream_type& (*)(__istream_type&)) [with _CharT = char; _Traits = std::char_traits<char>; __istream_type = std::basic_istream<char>]â /usr/include/c++/16/istream:128:7: 128 | operator>>(__istream_type& (*__pf)(__istream_type&)) | ^~~~~~~~ ⢠no known conversion for argument 1 from âchar [(width + 1)]â to âstd::basic_istream<char>::__istream_type& (*)(std::basic_istream<char>::__istream_type&)â {aka âstd::basic_istream<char>& (*)(std::basic_istream<char>&)â} /usr/include/c++/16/istream:128:36: 128 | operator>>(__istream_type& (*__pf)(__istream_type&)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ⢠candidate 15: âstd::basic_istream<_CharT, _Traits>::__istream_type& std::basic_istream<_CharT, _Traits>::operator>>(__ios_type& (*)(__ios_type&)) [with _CharT = char; _Traits = std::char_traits<char>; __istream_type = std::basic_istream<char>; __ios_type = std::basic_ios<char>]â /usr/include/c++/16/istream:132:7: 132 | operator>>(__ios_type& (*__pf)(__ios_type&)) | ^~~~~~~~ ⢠no known conversion for argument 1 from âchar [(width + 1)]â to âstd::basic_istream<char>::__ios_type& (*)(std::basic_istream<char>::__ios_type&)â {aka âstd::basic_ios<char>& (*)(std::basic_ios<char>&)â} /usr/include/c++/16/istream:132:32: 132 | operator>>(__ios_type& (*__pf)(__ios_type&)) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ ⢠candidate 16: âstd::basic_istream<_CharT, _Traits>::__istream_type& std::basic_istream<_CharT, _Traits>::operator>>(std::ios_base& (*)(std::ios_base&)) [with _CharT = char; _Traits = std::char_traits<char>; __istream_type = std::basic_istream<char>]â /usr/include/c++/16/istream:139:7: 139 | operator>>(ios_base& (*__pf)(ios_base&)) | ^~~~~~~~ ⢠no known conversion for argument 1 from âchar [(width + 1)]â to âstd::ios_base& (*)(std::ios_base&)â /usr/include/c++/16/istream:139:30: 139 | operator>>(ios_base& (*__pf)(ios_base&)) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ⢠candidate 17: âstd::basic_istream<_CharT, _Traits>& std::basic_istream<_CharT, _Traits>::operator>>(__streambuf_type*) [with _CharT = char; _Traits = std::char_traits<char>; __streambuf_type = std::basic_streambuf<char>]â /usr/include/c++/16/istream:358:7: 358 | operator>>(__streambuf_type* __sb); | ^~~~~~~~ ⢠no known conversion for argument 1 from âchar [(width + 1)]â to âstd::basic_istream<char>::__streambuf_type*â {aka âstd::basic_streambuf<char>*â} /usr/include/c++/16/istream:358:36: 358 | operator>>(__streambuf_type* __sb); | ~~~~~~~~~~~~~~~~~~^~~~ ⢠candidate 18: âtemplate<class _CharT, class _Traits, class _Alloc> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, __cxx11::basic_string<_CharT, _Traits, _Alloc>&)â /usr/include/c++/16/bits/basic_string.tcc:898:5: 898 | operator>>(basic_istream<_CharT, _Traits>& __in, | ^~~~~~~~ ⢠template argument deduction/substitution failed: ⢠mismatched types âstd::__cxx11::basic_string<_CharT, _Traits, _Alloc>â and âchar [(width + 1)]â jellyfish/query_main.cc:38:28: 38 | in >> std::setw(width) >> mer; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ⢠candidate 19: âtemplate<class _IntegerType> constexpr std::__byte_op_t<_IntegerType> std::operator>>(byte, _IntegerType)â /usr/include/c++/16/cstddef:136:5: 136 | operator>>(byte __b, _IntegerType __shift) noexcept | ^~~~~~~~ ⢠template argument deduction/substitution failed: ⢠cannot convert âstd::operator>><char, char_traits<char> >((* & in), std::setw(((int)width)))â (type âstd::basic_istream<char>â) to type âstd::byteâ jellyfish/query_main.cc:38:28: 38 | in >> std::setw(width) >> mer; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ⢠candidate 20: âtemplate<class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, _CharT&)â /usr/include/c++/16/bits/istream.tcc:983:5: 983 | operator>>(basic_istream<_CharT, _Traits>& __in, _CharT& __c) | ^~~~~~~~ ⢠template argument deduction/substitution failed: ⢠deduced conflicting types for parameter â_CharTâ (âcharâ and âchar [(width + 1)]â) jellyfish/query_main.cc:38:28: 38 | in >> std::setw(width) >> mer; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ⢠candidate 21: âtemplate<class _Traits> std::basic_istream<char, _Traits>& std::operator>>(basic_istream<char, _Traits>&, unsigned char&)â /usr/include/c++/16/istream:862:5: 862 | operator>>(basic_istream<char, _Traits>& __in, unsigned char& __c) | ^~~~~~~~ ⢠template argument deduction/substitution failed: ⢠cannot convert âmerâ (type âchar [(width + 1)]â) to type âunsigned char&â jellyfish/query_main.cc:38:31: 38 | in >> std::setw(width) >> mer; | ^~~ ⢠candidate 22: âtemplate<class _Traits> std::basic_istream<char, _Traits>& std::operator>>(basic_istream<char, _Traits>&, signed char&)â /usr/include/c++/16/istream:867:5: 867 | operator>>(basic_istream<char, _Traits>& __in, signed char& __c) | ^~~~~~~~ ⢠template argument deduction/substitution failed: ⢠cannot convert âmerâ (type âchar [(width + 1)]â) to type âsigned char&â jellyfish/query_main.cc:38:31: 38 | in >> std::setw(width) >> mer; | ^~~ ⢠candidate 23: âtemplate<class _CharT, class _Traits, long unsigned int _Num> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, _CharT (&)[_Num])â /usr/include/c++/16/istream:965:5: 965 | operator>>(basic_istream<_CharT, _Traits>& __in, _CharT (&__s)[_Num]) | ^~~~~~~~ ⢠template argument deduction/substitution failed: ⢠variable-sized array type âlong intâ is not a valid template argument jellyfish/query_main.cc:38:28: 38 | in >> std::setw(width) >> mer; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ⢠candidate 24: âtemplate<class _Traits, long unsigned int _Num> std::basic_istream<char, _Traits>& std::operator>>(basic_istream<char, _Traits>&, unsigned char (&)[_Num])â /usr/include/c++/16/istream:974:5: 974 | operator>>(basic_istream<char, _Traits>& __in, unsigned char (&__s)[_Num]) | ^~~~~~~~ ⢠template argument deduction/substitution failed: ⢠mismatched types âunsigned charâ and âcharâ jellyfish/query_main.cc:38:28: 38 | in >> std::setw(width) >> mer; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ⢠candidate 25: âtemplate<class _Traits, long unsigned int _Num> std::basic_istream<char, _Traits>& std::operator>>(basic_istream<char, _Traits>&, signed char (&)[_Num])â /usr/include/c++/16/istream:979:5: 979 | operator>>(basic_istream<char, _Traits>& __in, signed char (&__s)[_Num]) | ^~~~~~~~ ⢠template argument deduction/substitution failed: ⢠mismatched types âsigned charâ and âcharâ jellyfish/query_main.cc:38:28: 38 | in >> std::setw(width) >> mer; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ⢠candidate 26: âtemplate<class _Istream, class _Tp> _Istream&& std::operator>>(_Istream&&, _Tp&&)â /usr/include/c++/16/istream:1112:5: 1112 | operator>>(_Istream&& __is, _Tp&& __x) | ^~~~~~~~ ⢠template argument deduction/substitution failed: ⢠variable-sized array type âchar (&)[(width + 1)]â is not a valid template argument jellyfish/query_main.cc:38:28: 38 | in >> std::setw(width) >> mer; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ⢠candidate 27: âtemplate<class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, _Resetiosflags)â /usr/include/c++/16/iomanip:81:5: 81 | operator>>(basic_istream<_CharT, _Traits>& __is, _Resetiosflags __f) | ^~~~~~~~ ⢠template argument deduction/substitution failed: ⢠cannot convert âmerâ (type âchar [(width + 1)]â) to type âstd::_Resetiosflagsâ jellyfish/query_main.cc:38:31: 38 | in >> std::setw(width) >> mer; | ^~~ ⢠candidate 28: âtemplate<class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, _Setiosflags)â /usr/include/c++/16/iomanip:111:5: 111 | operator>>(basic_istream<_CharT, _Traits>& __is, _Setiosflags __f) | ^~~~~~~~ ⢠template argument deduction/substitution failed: ⢠cannot convert âmerâ (type âchar [(width + 1)]â) to type âstd::_Setiosflagsâ jellyfish/query_main.cc:38:31: 38 | in >> std::setw(width) >> mer; | ^~~ ⢠candidate 29: âtemplate<class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, _Setbase)â /usr/include/c++/16/iomanip:142:5: 142 | operator>>(basic_istream<_CharT, _Traits>& __is, _Setbase __f) | ^~~~~~~~ ⢠template argument deduction/substitution failed: ⢠cannot convert âmerâ (type âchar [(width + 1)]â) to type âstd::_Setbaseâ jellyfish/query_main.cc:38:31: 38 | in >> std::setw(width) >> mer; | ^~~ ⢠candidate 30: âtemplate<class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, _Setfill<_CharT>)â /usr/include/c++/16/iomanip:182:5: 182 | operator>>(basic_istream<_CharT, _Traits>& __is, _Setfill<_CharT> __f) | ^~~~~~~~ ⢠template argument deduction/substitution failed: ⢠mismatched types âstd::_Setfill<_CharT>â and âchar*â jellyfish/query_main.cc:38:28: 38 | in >> std::setw(width) >> mer; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ⢠candidate 31: âtemplate<class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, _Setprecision)â /usr/include/c++/16/iomanip:212:5: 212 | operator>>(basic_istream<_CharT, _Traits>& __is, _Setprecision __f) | ^~~~~~~~ ⢠template argument deduction/substitution failed: ⢠cannot convert âmerâ (type âchar [(width + 1)]â) to type âstd::_Setprecisionâ jellyfish/query_main.cc:38:31: 38 | in >> std::setw(width) >> mer; | ^~~ ⢠candidate 32: âtemplate<class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, _Setw)â /usr/include/c++/16/iomanip:242:5: 242 | operator>>(basic_istream<_CharT, _Traits>& __is, _Setw __f) | ^~~~~~~~ ⢠template argument deduction/substitution failed: ⢠cannot convert âmerâ (type âchar [(width + 1)]â) to type âstd::_Setwâ jellyfish/query_main.cc:38:31: 38 | in >> std::setw(width) >> mer; | ^~~ ⢠candidate 33: âtemplate<class _CharT, class _Traits, class _MoneyT> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, _Get_money<_MoneyT>)â /usr/include/c++/16/iomanip:276:5: 276 | operator>>(basic_istream<_CharT, _Traits>& __is, _Get_money<_MoneyT> __f) | ^~~~~~~~ ⢠template argument deduction/substitution failed: ⢠mismatched types âstd::_Get_money<_MoneyT>â and âchar*â jellyfish/query_main.cc:38:28: 38 | in >> std::setw(width) >> mer; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ⢠candidate 34: âtemplate<class _CharT, class _Traits> std::basic_istream<_CharT, _Traits>& std::operator>>(basic_istream<_CharT, _Traits>&, _Get_time<_CharT>)â /usr/include/c++/16/iomanip:430:5: 430 | operator>>(basic_istream<_CharT, _Traits>& __is, _Get_time<_CharT> __f) | ^~~~~~~~ ⢠template argument deduction/substitution failed: ⢠mismatched types âstd::_Get_time<_CharT>â and âchar*â jellyfish/query_main.cc:38:28: 38 | in >> std::setw(width) >> mer; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ./jellyfish/err.hpp: In instantiation of âerr::raise_t<err_t>::~raise_t() [with err_t = jellyfish::simple_growing_array<char>::SimpleGrowingArrayError]â: ./jellyfish/simple_growing_array.hpp:55:9: required from âvoid jellyfish::simple_growing_array<T>::resize() [with T = char]â 139 | #define eraise(e) if(1) err::raise_t<e>() | ^~~~~~~~~~~~ ./jellyfish/simple_growing_array.hpp:27:53: required from âjellyfish::simple_growing_array<T>::simple_growing_array(size_t) [with T = char; size_t = long unsigned int]â 27 | _capacity(capacity / 2), _size(0), _data(0) { resize(); } | ^~~~~~ ./jellyfish/seq_qual_parser.hpp:53:41: required from here 53 | seq_qual_parser(fd, path, str, len) {} | ^ ./jellyfish/err.hpp:123:18: warning: âthrowâ will always call âterminateâ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ânoexceptâ ./jellyfish/err.hpp: In instantiation of âerr::raise_t<err_t>::~raise_t() [with err_t = jellyfish::raw_hash::ErrorReading]â: ./jellyfish/raw_dumper.hpp:169:11: required from âstatic jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array<long unsigned int, atomic::gcc, allocators::mmap>; storage_t = jellyfish::invertible_hash::array<long unsigned int, atomic::gcc, allocators::mmap>]â 139 | #define eraise(e) if(1) err::raise_t<e>() | ^~~~~~~~~~~~ ./jellyfish/raw_dumper.hpp:98:20: required from âjellyfish::raw_hash::query<_storage_t>::query(mapped_file&) [with _storage_t = jellyfish::invertible_hash::array<long unsigned int, atomic::gcc, allocators::mmap>]â 98 | _ary = init(_file, hash_matrix, hash_inverse_matrix); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ jellyfish/query_main.cc:63:34: required from here 63 | raw_inv_hash_query_t hash(dbf); | ^ ./jellyfish/err.hpp:123:18: warning: âthrowâ will always call âterminateâ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ânoexceptâ make[3]: *** [Makefile:1222: jellyfish/query_main.o] Error 1 make[3]: Leaving directory '/<<PKGBUILDDIR>>' make[2]: *** [Makefile:872: all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>' dh_auto_build: error: make -j1 all bin/generate_sequence bin/test_all returned exit code 2 make[1]: *** [debian/rules:22: override_dh_auto_build] Error 25 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:10: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 --------------------------------------------------------------------------------
