Your message dated Wed, 12 Aug 2026 06:08:35 +0000
with message-id <[email protected]>
and subject line Bug#1133567: fixed in murasaki 1.68.6-18
has caused the Debian Bug report #1133567,
regarding murasaki: ftbfs with GCC-16
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1133567: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1133567
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:murasaki
Version: 1.68.6-17
Severity: important
Tags: sid forky ftbfs
User: [email protected]
Usertags: ftbfs-gcc-16
Hi,
murasaki fails to build in a test rebuild on at least amd64 and arm64 with
gcc-16/g++-16, but builds properly with gcc-15/g++-15. The severity of this
report will be raised before the forky release.
The full build log can be found at:
https://people.debian.org/~ema/gcc-16-rebuilds/output-1/murasaki_arm64.build.xz
The last lines of the build log are at the end of this report.
To build with GCC 16, either set CC=gcc-16 CXX=g++-16 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures include unused (but set) variables, array subscripts
partly outside array bounds, and new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-16/porting_to.html
Please only close this issue after double-checking that the package can be
built correctly with GCC 16.
Please do not reassign this bug to another package. If a fix in another package
is required, then file a bug for the other package (or clone), and mark this
bug as blocked by the bug in the other package.
[...]
134 | struct binary_function
| ^~~~~~~~~~~~~~~
murasaki_mpi.cc:89:29: warning: ‘template<class _Arg1, class _Arg2, class
_Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
89 | struct lt_mpi_worldMemory : binary_function<int,int,bool> {
| ^~~~~~~~~~~~~~~
/usr/include/c++/16/bits/stl_function.h:134:12: note: declared here
134 | struct binary_function
| ^~~~~~~~~~~~~~~
murasaki_mpi.cc:95:29: warning: ‘template<class _Arg1, class _Arg2, class
_Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
95 | struct gt_mpi_worldMemory : binary_function<int,int,bool> {
| ^~~~~~~~~~~~~~~
/usr/include/c++/16/bits/stl_function.h:134:12: note: declared here
134 | struct binary_function
| ^~~~~~~~~~~~~~~
make[3]: *** [Makefile:190: murasaki.o] Error 1
make[3]: *** [Makefile:190: align-best.o] Error 1
make[3]: *** [Makefile:190: testeco.o] Error 1
In file included from sequence.h:42,
from options.h:28,
from options.cc:26:
itree.h: In instantiation of ‘class Itree::itree<long int, AnchorSet*>’:
sequence.h:136:18: required from here
136 | typedef usedItree::iterator MapIte;
| ^~
itree.h:396:5: error: no class template named ‘rebind’ in ‘class
std::allocator<Itree::itree_node<long int, AnchorSet*> >’
396 | _Node_allocator;
| ^~~~~~~~~~~~~~~
sequence.h:444:19: warning: ‘template<class _Arg1, class _Arg2, class _Result>
struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
444 | struct ltRegion : binary_function<SeqPosPair,SeqPosPair,bool> {
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/16/bits/predefined_ops.h:33,
from /usr/include/c++/16/bits/stl_algobase.h:70,
from /usr/include/c++/16/bits/stl_tree.h:65,
from /usr/include/c++/16/set:64,
from cmultiset.h:33,
from sequence.h:30:
/usr/include/c++/16/bits/stl_function.h:134:12: note: declared here
134 | struct binary_function
| ^~~~~~~~~~~~~~~
make[3]: *** [Makefile:190: sequence.o] Error 1
make[3]: *** [Makefile:190: murasaki_mpi.o] Error 1
make[3]: *** [Makefile:190: options.o] Error 1
cgr.cc: In member function ‘std::pair<long unsigned int, long unsigned int>
Cgr::sampleHighLow(double, double)’:
cgr.cc:339:10: warning: ‘void operator delete(void*, std::size_t)’ called on
pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
339 | delete alt;
| ^~~
cgr.cc:330:24: note: returned from ‘void* operator new [](std::size_t)’
330 | pix *alt=new pix[size];
| ^
cgr.cc: In member function ‘std::pair<long unsigned int, long unsigned int>
Cgr::sampleHighLow(int, int)’:
cgr.cc:354:10: warning: ‘void operator delete(void*, std::size_t)’ called on
pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
354 | delete alt;
| ^~~
cgr.cc:345:24: note: returned from ‘void* operator new [](std::size_t)’
345 | pix *alt=new pix[size];
| ^
cgr.cc: In member function ‘std::pair<long unsigned int, long unsigned int>
Cgr::findNiceRange()’:
cgr.cc:395:10: warning: ‘void operator delete(void*, std::size_t)’ called on
pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
395 | delete alt;
| ^~~
cgr.cc:376:24: note: returned from ‘void* operator new [](std::size_t)’
376 | pix *alt=new pix[size];
| ^
make[3]: Leaving directory '/build/reproducible-path/murasaki-1.68.6/src'
make[2]: *** [Makefile:8: all] Error 2
make[2]: Leaving directory '/build/reproducible-path/murasaki-1.68.6'
dh_auto_build: error: make -j128 INSTALL="install --strip-program=true"
USE_MPI=YES returned exit code 2
make[1]: *** [debian/rules:19: override_dh_auto_build] Error 25
make[1]: Leaving directory '/build/reproducible-path/murasaki-1.68.6'
make: *** [debian/rules:16: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit
status 2
--- End Message ---
--- Begin Message ---
Source: murasaki
Source-Version: 1.68.6-18
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
murasaki, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated murasaki package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 12 Aug 2026 07:19:33 +0200
Source: murasaki
Architecture: source
Version: 1.68.6-18
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1133567
Changes:
murasaki (1.68.6-18) unstable; urgency=medium
.
* Fix build failure with GCC 16 / C++20: std::allocator::rebind removed
Closes: #1133567
* Standards-Version: 4.7.4 (routine-update)
* Reflow Uploaders field (cme)
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