Package: src:adios4dolfinx Version: 0.10.0.post1-3 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202608/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:adios4dolfinx, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] =================================== FAILURES =================================== _________ test_mesh_read_writer[True-GhostMode.shared_facet-HDF5-.h5] __________ encoder = 'HDF5', suffix = '.h5', ghost_mode = GhostMode.shared_facet tmp_path = PosixPath('/tmp/pytest-of-sbuild/pytest-1/test_mesh_read_writer_True_Gho1') store_partition = True @pytest.mark.parametrize("encoder, suffix", [("BP4", ".bp"), ("HDF5", ".h5"), ("BP5", ".bp")]) @pytest.mark.parametrize( "ghost_mode", [dolfinx.mesh.GhostMode.shared_facet, dolfinx.mesh.GhostMode.none] ) @pytest.mark.parametrize("store_partition", [True, False]) def test_mesh_read_writer(encoder, suffix, ghost_mode, tmp_path, store_partition): N = 7 # Consistent tmp dir across processes fname = MPI.COMM_WORLD.bcast(tmp_path, root=0) file = fname / f"adios_mesh_{encoder}_{store_partition}" xdmf_file = fname / "xdmf_mesh_{encode}_{ghost_mode}_{store_partition}" mesh = dolfinx.mesh.create_unit_cube(MPI.COMM_WORLD, N, N, N, ghost_mode=ghost_mode) > write_mesh(file.with_suffix(suffix), mesh, encoder, > store_partition_info=store_partition) /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_adios4dolfinx/build/tests/test_mesh_writer.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_adios4dolfinx/build/adios4dolfinx/checkpointing.py:806: in write_mesh _internal_mesh_writer( /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_adios4dolfinx/build/adios4dolfinx/writers.py:45: in write_mesh with ADIOSFile( /usr/lib/python3.14/contextlib.py:141: in __enter__ return next(self.gen) ^^^^^^^^^^^^^^ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ adios = <adios2.bindings.adios2_bindings_mpi.ADIOS object at 0x7fecba2553b0> filename = PosixPath('/tmp/pytest-of-sbuild/pytest-1/test_mesh_read_writer_True_Gho1/adios_mesh_HDF5_True.h5') engine = 'HDF5', mode = Mode.Write, io_name = 'MeshWriter' comm = <mpi4py.MPI.Intracomm object at 0x7fecb8d3b030> @contextmanager def ADIOSFile( adios: adios2.ADIOS, filename: Union[Path, str], engine: str, mode: adios2.Mode, io_name: str, comm: MPI.Intracomm | None = None, ): io = adios.DeclareIO(io_name) io.SetEngine(engine) # ADIOS2 sometimes struggles with existing files/folders it should overwrite if mode == adios2.Mode.Write: filename = Path(filename) if filename.exists() and comm is not None and comm.rank == 0: if filename.is_dir(): shutil.rmtree(filename) else: filename.unlink() if comm is not None: comm.Barrier() > file = io.Open(str(filename), mode) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ E ValueError: [1;36m[Sat Aug 22 10:11:38 2026][1;34m [ADIOS2 EXCEPTION][0m <Core> <IOHDF5> <MakeEngineHDF5> : A serial HDF5 engine cannot be used with a communicator that is MPI-based.[0m /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_adios4dolfinx/build/adios4dolfinx/adios2_helpers.py:70: ValueError _____________ test_mesh_read_writer[True-GhostMode.none-HDF5-.h5] ______________ encoder = 'HDF5', suffix = '.h5', ghost_mode = GhostMode.none tmp_path = PosixPath('/tmp/pytest-of-sbuild/pytest-1/test_mesh_read_writer_True_Gho4') store_partition = True @pytest.mark.parametrize("encoder, suffix", [("BP4", ".bp"), ("HDF5", ".h5"), ("BP5", ".bp")]) @pytest.mark.parametrize( "ghost_mode", [dolfinx.mesh.GhostMode.shared_facet, dolfinx.mesh.GhostMode.none] ) @pytest.mark.parametrize("store_partition", [True, False]) def test_mesh_read_writer(encoder, suffix, ghost_mode, tmp_path, store_partition): N = 7 # Consistent tmp dir across processes fname = MPI.COMM_WORLD.bcast(tmp_path, root=0) file = fname / f"adios_mesh_{encoder}_{store_partition}" xdmf_file = fname / "xdmf_mesh_{encode}_{ghost_mode}_{store_partition}" mesh = dolfinx.mesh.create_unit_cube(MPI.COMM_WORLD, N, N, N, ghost_mode=ghost_mode) > write_mesh(file.with_suffix(suffix), mesh, encoder, > store_partition_info=store_partition) /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_adios4dolfinx/build/tests/test_mesh_writer.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_adios4dolfinx/build/adios4dolfinx/checkpointing.py:806: in write_mesh _internal_mesh_writer( /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_adios4dolfinx/build/adios4dolfinx/writers.py:45: in write_mesh with ADIOSFile( /usr/lib/python3.14/contextlib.py:141: in __enter__ return next(self.gen) ^^^^^^^^^^^^^^ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ adios = <adios2.bindings.adios2_bindings_mpi.ADIOS object at 0x7fecb896dcb0> filename = PosixPath('/tmp/pytest-of-sbuild/pytest-1/test_mesh_read_writer_True_Gho4/adios_mesh_HDF5_True.h5') engine = 'HDF5', mode = Mode.Write, io_name = 'MeshWriter' comm = <mpi4py.MPI.Intracomm object at 0x7fecb896e100> @contextmanager def ADIOSFile( adios: adios2.ADIOS, filename: Union[Path, str], engine: str, mode: adios2.Mode, io_name: str, comm: MPI.Intracomm | None = None, ): io = adios.DeclareIO(io_name) io.SetEngine(engine) # ADIOS2 sometimes struggles with existing files/folders it should overwrite if mode == adios2.Mode.Write: filename = Path(filename) if filename.exists() and comm is not None and comm.rank == 0: if filename.is_dir(): shutil.rmtree(filename) else: filename.unlink() if comm is not None: comm.Barrier() > file = io.Open(str(filename), mode) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ E ValueError: [1;36m[Sat Aug 22 10:11:38 2026][1;34m [ADIOS2 EXCEPTION][0m <Core> <IOHDF5> <MakeEngineHDF5> : A serial HDF5 engine cannot be used with a communicator that is MPI-based.[0m /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_adios4dolfinx/build/adios4dolfinx/adios2_helpers.py:70: ValueError _________ test_mesh_read_writer[False-GhostMode.shared_facet-HDF5-.h5] _________ encoder = 'HDF5', suffix = '.h5', ghost_mode = GhostMode.shared_facet tmp_path = PosixPath('/tmp/pytest-of-sbuild/pytest-1/test_mesh_read_writer_False_Gh1') store_partition = False @pytest.mark.parametrize("encoder, suffix", [("BP4", ".bp"), ("HDF5", ".h5"), ("BP5", ".bp")]) @pytest.mark.parametrize( "ghost_mode", [dolfinx.mesh.GhostMode.shared_facet, dolfinx.mesh.GhostMode.none] ) @pytest.mark.parametrize("store_partition", [True, False]) def test_mesh_read_writer(encoder, suffix, ghost_mode, tmp_path, store_partition): N = 7 # Consistent tmp dir across processes fname = MPI.COMM_WORLD.bcast(tmp_path, root=0) file = fname / f"adios_mesh_{encoder}_{store_partition}" xdmf_file = fname / "xdmf_mesh_{encode}_{ghost_mode}_{store_partition}" mesh = dolfinx.mesh.create_unit_cube(MPI.COMM_WORLD, N, N, N, ghost_mode=ghost_mode) > write_mesh(file.with_suffix(suffix), mesh, encoder, > store_partition_info=store_partition) /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_adios4dolfinx/build/tests/test_mesh_writer.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_adios4dolfinx/build/adios4dolfinx/checkpointing.py:806: in write_mesh _internal_mesh_writer( /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_adios4dolfinx/build/adios4dolfinx/writers.py:45: in write_mesh with ADIOSFile( /usr/lib/python3.14/contextlib.py:141: in __enter__ return next(self.gen) ^^^^^^^^^^^^^^ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ adios = <adios2.bindings.adios2_bindings_mpi.ADIOS object at 0x7fecb8931f80> filename = PosixPath('/tmp/pytest-of-sbuild/pytest-1/test_mesh_read_writer_False_Gh1/adios_mesh_HDF5_False.h5') engine = 'HDF5', mode = Mode.Write, io_name = 'MeshWriter' comm = <mpi4py.MPI.Intracomm object at 0x7fecba3f57a0> @contextmanager def ADIOSFile( adios: adios2.ADIOS, filename: Union[Path, str], engine: str, mode: adios2.Mode, io_name: str, comm: MPI.Intracomm | None = None, ): io = adios.DeclareIO(io_name) io.SetEngine(engine) # ADIOS2 sometimes struggles with existing files/folders it should overwrite if mode == adios2.Mode.Write: filename = Path(filename) if filename.exists() and comm is not None and comm.rank == 0: if filename.is_dir(): shutil.rmtree(filename) else: filename.unlink() if comm is not None: comm.Barrier() > file = io.Open(str(filename), mode) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ E ValueError: [1;36m[Sat Aug 22 10:11:38 2026][1;34m [ADIOS2 EXCEPTION][0m <Core> <IOHDF5> <MakeEngineHDF5> : A serial HDF5 engine cannot be used with a communicator that is MPI-based.[0m /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_adios4dolfinx/build/adios4dolfinx/adios2_helpers.py:70: ValueError _____________ test_mesh_read_writer[False-GhostMode.none-HDF5-.h5] _____________ encoder = 'HDF5', suffix = '.h5', ghost_mode = GhostMode.none tmp_path = PosixPath('/tmp/pytest-of-sbuild/pytest-1/test_mesh_read_writer_False_Gh4') store_partition = False @pytest.mark.parametrize("encoder, suffix", [("BP4", ".bp"), ("HDF5", ".h5"), ("BP5", ".bp")]) @pytest.mark.parametrize( "ghost_mode", [dolfinx.mesh.GhostMode.shared_facet, dolfinx.mesh.GhostMode.none] ) @pytest.mark.parametrize("store_partition", [True, False]) def test_mesh_read_writer(encoder, suffix, ghost_mode, tmp_path, store_partition): N = 7 # Consistent tmp dir across processes fname = MPI.COMM_WORLD.bcast(tmp_path, root=0) file = fname / f"adios_mesh_{encoder}_{store_partition}" xdmf_file = fname / "xdmf_mesh_{encode}_{ghost_mode}_{store_partition}" mesh = dolfinx.mesh.create_unit_cube(MPI.COMM_WORLD, N, N, N, ghost_mode=ghost_mode) > write_mesh(file.with_suffix(suffix), mesh, encoder, > store_partition_info=store_partition) /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_adios4dolfinx/build/tests/test_mesh_writer.py:25: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_adios4dolfinx/build/adios4dolfinx/checkpointing.py:806: in write_mesh _internal_mesh_writer( /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_adios4dolfinx/build/adios4dolfinx/writers.py:45: in write_mesh with ADIOSFile( /usr/lib/python3.14/contextlib.py:141: in __enter__ return next(self.gen) ^^^^^^^^^^^^^^ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ adios = <adios2.bindings.adios2_bindings_mpi.ADIOS object at 0x7fecb896dec0> filename = PosixPath('/tmp/pytest-of-sbuild/pytest-1/test_mesh_read_writer_False_Gh4/adios_mesh_HDF5_False.h5') engine = 'HDF5', mode = Mode.Write, io_name = 'MeshWriter' comm = <mpi4py.MPI.Intracomm object at 0x7fecb896d410> @contextmanager def ADIOSFile( adios: adios2.ADIOS, filename: Union[Path, str], engine: str, mode: adios2.Mode, io_name: str, comm: MPI.Intracomm | None = None, ): io = adios.DeclareIO(io_name) io.SetEngine(engine) # ADIOS2 sometimes struggles with existing files/folders it should overwrite if mode == adios2.Mode.Write: filename = Path(filename) if filename.exists() and comm is not None and comm.rank == 0: if filename.is_dir(): shutil.rmtree(filename) else: filename.unlink() if comm is not None: comm.Barrier() > file = io.Open(str(filename), mode) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ E ValueError: [1;36m[Sat Aug 22 10:11:38 2026][1;34m [ADIOS2 EXCEPTION][0m <Core> <IOHDF5> <MakeEngineHDF5> : A serial HDF5 engine cannot be used with a communicator that is MPI-based.[0m /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_adios4dolfinx/build/adios4dolfinx/adios2_helpers.py:70: ValueError =========================== short test summary info ============================ FAILED tests/test_mesh_writer.py::test_mesh_read_writer[True-GhostMode.shared_facet-HDF5-.h5] FAILED tests/test_mesh_writer.py::test_mesh_read_writer[True-GhostMode.none-HDF5-.h5] FAILED tests/test_mesh_writer.py::test_mesh_read_writer[False-GhostMode.shared_facet-HDF5-.h5] FAILED tests/test_mesh_writer.py::test_mesh_read_writer[False-GhostMode.none-HDF5-.h5] ========== 4 failed, 998 passed, 5 skipped, 180 deselected in 16.84s =========== E: pybuild pybuild:485: test: plugin pyproject failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_adios4dolfinx/build; python3.14 -m pytest -k "not test_original_checkpoint" dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.13 3.14" --parallel=2 returned exit code 13 make: *** [debian/rules:13: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 --------------------------------------------------------------------------------
