Package: src:yt Version: 4.4.2-1 Severity: serious Tags: ftbfs forky sid Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202608/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:yt, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] # H5PY_ALWAYS_USE_MPI takes precedence if H5PY_NEVER_USE_MPI is also set if _MPI_ACTIVE or _MPI_USE_ALWAYS: try: from . import _debian_h5py_mpi as _h5py except: from . import _debian_h5py_serial as _h5py else: try: from . import _debian_h5py_serial as _h5py except: > from . import _debian_h5py_mpi as _h5py E ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) E Something went wrong while trying to lazy-import h5py. Please make sure that h5py is properly installed. E If the problem persists, please file an issue at https://github.com/yt-project/yt/issues/new /usr/lib/python3/dist-packages/h5py/__init__.py:26: ImportError __________________ test_all_invalid_with_missing_requirements __________________ # avoid running mpi with serial (1 process) jobs # by checking whether mpi is actually being used over multiple processes # Probe number of processes with OMPI_COMM_WORLD_SIZE (openmpi) and MPI_LOCALNRANKS (mpich) from os import getenv as os_getenv from sys import modules as sys_modules from importlib import import_module _OPENMPI_MULTIPROC = os_getenv('OMPI_COMM_WORLD_SIZE') is not None _MPICH_MULTIPROC = os_getenv('MPI_LOCALNRANKS') is not None _MPI_USE_ALWAYS = os_getenv('H5PY_ALWAYS_USE_MPI') is not None _MPI_USE_NEVER = os_getenv('H5PY_NEVER_USE_MPI') is not None _MPI_ACTIVE = (_OPENMPI_MULTIPROC or _MPICH_MULTIPROC) and not _MPI_USE_NEVER # H5PY_ALWAYS_USE_MPI takes precedence if H5PY_NEVER_USE_MPI is also set if _MPI_ACTIVE or _MPI_USE_ALWAYS: try: from . import _debian_h5py_mpi as _h5py except: from . import _debian_h5py_serial as _h5py else: try: > from . import _debian_h5py_serial as _h5py /usr/lib/python3/dist-packages/h5py/__init__.py:24: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ # This file is part of h5py, a Python interface to the HDF5 library. # # http://www.h5py.org # # Copyright 2008-2013 Andrew Collette and contributors # # License: Standard 3-clause BSD; see "license.txt" for full license terms # and contributor agreement. """ This is the h5py package, a Python interface to the HDF5 scientific data format. """ from warnings import warn as _warn import atexit # --- Library setup ----------------------------------------------------------- # When importing from the root of the unpacked tarball or git checkout, # Python sees the "h5py" source directory and tries to load it, which fails. # We tried working around this by using "package_dir" but that breaks Cython. try: from . import _errors except ImportError: import os.path as _op if _op.exists(_op.join(_op.dirname(__file__), '..', 'setup.py')): raise ImportError("You cannot import h5py from inside the install directory.\nChange to another directory first.") else: raise from . import version if version.hdf5_version_tuple[0:2] != version.hdf5_built_version_tuple[0:2]: > _warn(("h5py is running against HDF5 {0} when it was built against {1}, > " "this may cause problems").format( '{0}.{1}.{2}'.format(*version.hdf5_version_tuple), '{0}.{1}.{2}'.format(*version.hdf5_built_version_tuple) )) E UserWarning: h5py is running against HDF5 2.2.0 when it was built against 2.1.0, this may cause problems /usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:36: UserWarning During handling of the above exception, another exception occurred: tmp_path = PosixPath('/tmp/pytest-of-sbuild/pytest-1/test_all_invalid_with_missing_0') @pytest.mark.usefixtures("invalid_dataset_class_with_missing_requirements") def test_all_invalid_with_missing_requirements(tmp_path): with pytest.raises( YTUnidentifiedDataType, match=re.compile( re.escape(f"Could not determine input format from {tmp_path!r}\n") + "The following types could not be thorougly checked against your data because " "their requirements are missing. " "You may want to inspect this list and check your installation:\n" r".*" r"- MockDataset \(requires: mock_package_name\)" r".*" "\n\n" "Please make sure you are running a sufficiently recent version of yt.", re.DOTALL, ), ): > load(tmp_path) yt/tests/test_load_errors.py:258: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ yt/_maintenance/deprecation.py:68: in inner return func(*args, **kwargs) ^^^^^^^^^^^^^^^^^^^^^ yt/loaders.py:121: in load if cls._is_valid(fn, *args, **kwargs): ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ yt/frontends/swift/data_structures.py:205: in _is_valid handle = h5py.File(filename, mode="r") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ yt/utilities/on_demand_imports.py:39: in __call__ raise self.error yt/utilities/on_demand_imports.py:77: in inner return func(self) ^^^^^^^^^^ yt/utilities/on_demand_imports.py:305: in File from h5py import File _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ # avoid running mpi with serial (1 process) jobs # by checking whether mpi is actually being used over multiple processes # Probe number of processes with OMPI_COMM_WORLD_SIZE (openmpi) and MPI_LOCALNRANKS (mpich) from os import getenv as os_getenv from sys import modules as sys_modules from importlib import import_module _OPENMPI_MULTIPROC = os_getenv('OMPI_COMM_WORLD_SIZE') is not None _MPICH_MULTIPROC = os_getenv('MPI_LOCALNRANKS') is not None _MPI_USE_ALWAYS = os_getenv('H5PY_ALWAYS_USE_MPI') is not None _MPI_USE_NEVER = os_getenv('H5PY_NEVER_USE_MPI') is not None _MPI_ACTIVE = (_OPENMPI_MULTIPROC or _MPICH_MULTIPROC) and not _MPI_USE_NEVER # H5PY_ALWAYS_USE_MPI takes precedence if H5PY_NEVER_USE_MPI is also set if _MPI_ACTIVE or _MPI_USE_ALWAYS: try: from . import _debian_h5py_mpi as _h5py except: from . import _debian_h5py_serial as _h5py else: try: from . import _debian_h5py_serial as _h5py except: > from . import _debian_h5py_mpi as _h5py E ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) E Something went wrong while trying to lazy-import h5py. Please make sure that h5py is properly installed. E If the problem persists, please file an issue at https://github.com/yt-project/yt/issues/new /usr/lib/python3/dist-packages/h5py/__init__.py:26: ImportError _________________ test_single_valid_with_missing_requirements __________________ tmp_path = PosixPath('/tmp/pytest-of-sbuild/pytest-1/test_single_valid_with_missing0') @pytest.mark.usefixtures("valid_dataset_class_with_missing_requirements") def test_single_valid_with_missing_requirements(tmp_path): > with pytest.warns( UserWarning, match=( "This dataset appears to be of type MockDataset, " "but the following requirements are currently missing: mock_package_name\n" "Please verify your installation." ), ): E UserWarning: h5py is running against HDF5 2.2.0 when it was built against 2.1.0, this may cause problems yt/tests/test_load_errors.py:294: UserWarning =========================== short test summary info ============================ SKIPPED [2] yt/testing.py:1253: Missing required file WDMerger_hdf5_chk_1000/WDMerger_hdf5_chk_1000.hdf5 SKIPPED [1] yt/testing.py:1253: Missing required module xarray SKIPPED [1] yt/testing.py:1253: Missing required file IsothermalCollapse/snap_505 SKIPPED [5] yt/testing.py:1253: Missing required file IsolatedGalaxy/galaxy0030/galaxy0030 SKIPPED [13] yt/testing.py:1253: Missing required module firefly SKIPPED [1] yt/data_objects/tests/test_glue.py:15: missing requirement(s): glue, astropy SKIPPED [3] yt/testing.py:1253: Missing required module astropy SKIPPED [1] yt/testing.py:1253: Missing required module pandas SKIPPED [1] yt/testing.py:1253: Missing required file GadgetDiskGalaxy/snapshot_200.hdf5 SKIPPED [2] yt/testing.py:1253: Missing required file TNGHalo/halo_59.hdf5 SKIPPED [2] yt/testing.py:1253: Missing required module miniball SKIPPED [1] yt/testing.py:1253: Missing required file enzo_tiny_cosmology/DD0046/DD0046 SKIPPED [1] yt/testing.py:1253: See https://github.com/yt-project/yt/issues/3909 SKIPPED [3] yt/testing.py:1253: Missing required module f90nml SKIPPED [1] yt/frontends/cf_radial/tests/test_cf_radial_pytest.py:36: missing requirement(s): xarray, netCDF4, pyart SKIPPED [1] yt/testing.py:1253: Missing required file snapshot_033/snap_033.0.hdf5 SKIPPED [7] yt/testing.py:1253: Missing required file output_00080/info_00080.txt SKIPPED [2] yt/testing.py:1253: Missing required file ramses_new_format/output_00002/info_00002.txt SKIPPED [1] yt/testing.py:1253: Missing required file UnigridData/turb_vels.h5 SKIPPED [2] yt/testing.py:1253: Missing required file KeplerianRing/keplerian_ring_0020.hdf5 SKIPPED [2] yt/testing.py:1253: Missing required file EAGLE_6/eagle_0005.hdf5 SKIPPED [1] yt/testing.py:1253: Missing required file MagneticumCluster/snap_132 SKIPPED [2] yt/geometry/tests/test_geometries.py:27: cannot test this case with vanilla yt (requires cartopy) see https://github.com/yt-project/yt/issues/4182 SKIPPED [4] yt/tests/test_load_archive.py:31: missing requirement(s): ratarmount SKIPPED [1] yt/tests/test_load_archive.py:96: missing requirement(s): ratarmount SKIPPED [1] yt/tests/test_load_errors.py:201: Deprecation warnings are disabled SKIPPED [4] yt/tests/test_load_sample.py:46: missing requirement(s): pandas, f90nml SKIPPED [1] yt/tests/test_load_sample.py:113: missing requirement(s): pandas SKIPPED [1] yt/tests/test_load_sample.py:130: missing requirement(s): pandas SKIPPED [1] yt/tests/test_load_sample.py:145: missing requirement(s): pandas SKIPPED [1] yt/tests/test_load_sample.py:152: missing requirement(s): pandas SKIPPED [1] yt/tests/test_load_sample.py:157: missing requirement(s): pandas SKIPPED [1] yt/tests/test_load_sample.py:164: missing requirement(s): pandas SKIPPED [1] yt/tests/test_load_sample.py:189: missing requirement(s): pandas SKIPPED [1] yt/tests/test_load_sample.py: unconditional skip SKIPPED [1] yt/tests/test_testing.py:12: https://github.com/yt-project/yt/issues/2533 SKIPPED [1] yt/tests/test_testing.py:27: https://github.com/yt-project/yt/issues/2533 SKIPPED [1] yt/testing.py:1253: Missing required file MOOSE_sample_data/out.e-s010 SKIPPED [3] yt/testing.py:1253: Missing required module cartopy SKIPPED [1] yt/testing.py:1253: missing external executable(s): tex SKIPPED [10] yt/testing.py:1253: Missing required module scipy SKIPPED [23] yt/visualization/tests/test_image_comp_geo.py:20: missing requirement(s): cartopy, scipy SKIPPED [1] yt/visualization/volume_rendering/tests/test_zbuff.py:54: Leads to memory alloc error on mipsel FAILED yt/data_objects/tests/test_image_array.py::TestImageArray::test_image_array_hdf5 FAILED yt/data_objects/tests/test_io_geometry.py::test_preserve_geometric_properties FAILED yt/data_objects/tests/test_io_geometry.py::test_default_to_cartesian FAILED yt/data_objects/tests/test_profiles.py::TestBadProfiles::test_unequal_bin_field_profile FAILED yt/data_objects/tests/test_profiles.py::TestBadProfiles::test_unequal_data_shape_profile FAILED yt/data_objects/tests/test_time_series.py::test_init_fake_dataseries FAILED yt/data_objects/tests/test_time_series.py::test_init_fake_dataseries2 FAILED yt/data_objects/tests/test_time_series.py::test_get_by_key - ImportErr... FAILED yt/frontends/ytdata/tests/test_data_reload.py::test_save_as_data_unit_system FAILED yt/geometry/tests/test_particle_octree.py::test_bitmap_save_load - Imp... FAILED yt/tests/test_external_frontends.py::test_external_frontend - ImportEr... FAILED yt/tests/test_load_errors.py::test_load_unidentified_data_dir - Import... FAILED yt/tests/test_load_errors.py::test_load_unidentified_data_file - Impor... FAILED yt/tests/test_load_errors.py::test_load_ambiguous_data - ImportError: ... FAILED yt/tests/test_load_errors.py::test_load_ambiguous_data_with_hint[alpha-AlphaDataset] FAILED yt/tests/test_load_errors.py::test_load_ambiguous_data_with_hint[al-AlphaDataset] FAILED yt/tests/test_load_errors.py::test_load_ambiguous_data_with_hint[ph-AlphaDataset] FAILED yt/tests/test_load_errors.py::test_load_ambiguous_data_with_hint[beta-BetaDataset] FAILED yt/tests/test_load_errors.py::test_load_ambiguous_data_with_hint[BeTA-BetaDataset] FAILED yt/tests/test_load_errors.py::test_load_ambiguous_data_with_hint[b-BetaDataset] FAILED yt/tests/test_load_errors.py::test_load_ambiguous_data_with_hint[mock-MockDataset] FAILED yt/tests/test_load_errors.py::test_load_ambiguous_data_with_hint[MockDataset-MockDataset] FAILED yt/tests/test_load_errors.py::test_all_invalid_with_missing_requirements FAILED yt/tests/test_load_errors.py::test_single_valid_with_missing_requirements ====== 24 failed, 738 passed, 115 skipped, 2 xpassed in 259.21s (0:04:19) ====== E: pybuild pybuild:485: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_yt/build; python3.14 -m pytest --confcutdir=. dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.13 3.14" --parallel=2 returned exit code 13 make: *** [debian/rules:25: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 --------------------------------------------------------------------------------
