Your message dated Wed, 02 Sep 2026 12:35:19 +0000
with message-id <[email protected]>
and subject line Bug#1143178: fixed in mrbayes 3.2.7a-8
has caused the Debian Bug report #1143178,
regarding mrbayes-mpi: Spawns instances of regular mb instead of running one
parallel instance
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
1143178: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1143178
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: mrbayes-mpi
Version: 3.2.7a-7+b1
Severity: grave
Justification: renders package unusable
X-Debbugs-Cc: [email protected]
Dear Maintainer,
Running mb-mpi spawn instances of MrBayes instead of running the version
with parallel support. Compiling the parallel version from git source
produces a working version (https://github.com/NBISweden/MrBayes,
./configure --with-mpi=yes), but compiling the source debian package
doesn't.
A smaller problem is that the package is undocumented. The official
instructions say that the parallel version should be run with `mpirun`:
`mpirun -np 4 mb file.nex`. The debian package ships `mb-mpi` executable,
which is a bash wrapper that does that with environmental variable
MPI_OPTIONS passed to mpirun as options. But to figure it out, a user
needs to read the script.
-- System Information:
Debian Release: forky/sid
APT prefers testing
APT policy: (900, 'testing'), (800, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 7.1.3+deb14-amd64 (SMP w/8 CPU threads; PREEMPT)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8),
LANGUAGE=en_US:en
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages mrbayes-mpi depends on:
ii libc6 2.42-17
ii libhmsbeagle1v5 4.0.1+dfsg-5
ii libreadline8t64 8.3-4
ii mpi-default-bin 1.20
ii ssh 1:10.4p1-2
mrbayes-mpi recommends no packages.
Versions of packages mrbayes-mpi suggests:
pn mpi-default <none>
ii mrbayes-doc 3.2.7a-7
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: mrbayes
Source-Version: 3.2.7a-8
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
mrbayes, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated mrbayes package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 01 Sep 2026 18:03:08 +0200
Source: mrbayes
Binary: mrbayes mrbayes-dbgsym mrbayes-doc mrbayes-mpi mrbayes-mpi-dbgsym
Architecture: source amd64 all
Version: 3.2.7a-8
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
mrbayes - Bayesian Inference of Phylogeny
mrbayes-doc - Bayesian Inference of Phylogeny - manual
mrbayes-mpi - Bayesian Inference of Phylogeny - mpi version
Closes: 1143178
Changes:
mrbayes (3.2.7a-8) unstable; urgency=medium
.
* Replace pkg-config with pkgconf in Build-Depends
* d/watch: version=5
* Controlling build with MPI changed from --enable-mpi to --with-mpi
Closes: #1143178
* Reformat the Last-Update date as ISO YYYY-MM-DD.
* Remove redundant Priority: optional from source stanza.
* Replace FSF postal address with a reference to
https://www.gnu.org/licenses/.
* Update standards version to 4.7.4, no changes needed.
* cme fix dpkg-control
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