Your message dated Tue, 22 Sep 2026 20:21:14 +0000
with message-id <[email protected]>
and subject line Bug#1147806: fixed in python-seqcluster 1.2.9+ds-8
has caused the Debian Bug report #1147806,
regarding python-seqcluster: FTBFS: ModuleNotFoundError: No module named
'pkg_resources'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1147806: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1147806
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:python-seqcluster
Version: 1.2.9+ds-7
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202609/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-seqcluster, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
from seqcluster.prepare_data import _read_fastq_files,
_create_matrix_uniq_seq
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_seqcluster/build/seqcluster/__init__.py",
line 2, in <module>
from seqcluster.libs import config
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_seqcluster/build/seqcluster/libs/config.py",
line 1, in <module>
import pkg_resources
ModuleNotFoundError: No module named 'pkg_resources'
----------------------------------------------------------------------
Ran 5 tests in 0.048s
FAILED (errors=4)
seqcluster cluster -m ../../data/examples/cluster/seqs_set.ma -a
../../data/examples/cluster/seqs_map.bam --gtf
../../data/examples/cluster/ann_reduced.gtf -r ../../data/genomes/genome.fa -o
test_out_res
seqcluster seqbuster --sps hsa --hairpin
../../data/examples/miraligner/hairpin.fa --mirna
../../data/examples/miraligner/miRNA.str --gtf
../../data/examples/miraligner/hsa.gff3 -o test_out_mirs_fasta --miraligner
../../data/examples/miraligner/sim_isomir.fa
E: pybuild pybuild:485: test: plugin custom failed with: exit code=1: cd
/<<PKGBUILDDIR>>; export
PATH=/<<PKGBUILDDIR>>/debian/python3-seqcluster/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
; cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_seqcluster/build; export
PYTHONPATH=/<<PKGBUILDDIR>>:; python3.14 -m nose2 -q
dh_auto_test: error: pybuild --test --test-nose2 -i python{version} -p 3.14
--parallel=2 returned exit code 13
make[1]: *** [debian/rules:34: override_dh_auto_test] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:8: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit
status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: python-seqcluster
Source-Version: 1.2.9+ds-8
Done: Alexandre Detiste <[email protected]>
We believe that the bug you reported is fixed in the latest version of
python-seqcluster, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Alexandre Detiste <[email protected]> (supplier of updated python-seqcluster
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 22 Sep 2026 21:46:19 +0200
Source: python-seqcluster
Binary: python-seqcluster-doc python3-seqcluster seqcluster
Architecture: source all
Version: 1.2.9+ds-8
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Alexandre Detiste <[email protected]>
Description:
python-seqcluster-doc - analysis of small RNA in NGS data (documentation)
python3-seqcluster - analysis of small RNA in NGS data
seqcluster - analysis of small RNA in NGS data
Closes: 1147806
Changes:
python-seqcluster (1.2.9+ds-8) unstable; urgency=medium
.
* Team upload.
* Avoid usage of pkg_resources (Closes: #1147806)
* Use dh-sequence-sphinxdoc
* Improve debian/salsa-ci.yml
* Rewrite d/watch in v5 format
* Update standards version to 4.7.4, no changes needed.
* Set upstream metadata fields: Repository-Browse.
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