Package: src:prody Version: 2.6.1+dfsg-4 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202610/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:prody, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] > raise SelectionError(selstr, err.column, msg + '\n' + str(err)) E prody.atomic.select.SelectionError: An invalid selection string is encountered: E 'chain A or chain B or chain E or chain F or chain G or chain H or chain I or chain P or chain Q' E ^ parsing failed here E Expected {~{'and'} ~{'or'} W:(#$',.0-;@-Z_-z~)}, found 'or' (at char 8), (line:1, col:9) prody/atomic/select.py:1022: SelectionError ------------------------------ Captured log call ------------------------------- DEBUG .prody:logger.py:135 12793 atoms and 1 coordinate set(s) were parsed in 0.15s. =============================== warnings summary =============================== prody/atomic/flags.py:532 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/flags.py:532: SyntaxWarning: "\ " is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\ "? A raw string is also an option. \ *PDB* *Source* *Conflict* prody/atomic/select.py:203 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:203: SyntaxWarning: "\|" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\|"? A raw string is also an option. **Special characters** (``~!@#$%^&*()-_=+[{}]\|;:,<>./?()'"``) must be prody/atomic/select.py:758 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:758: SyntaxWarning: "\ " is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\ "? A raw string is also an option. RE_NRANGE = re_compile(_ + '\ *(to|:)\ *' + _) prody/atomic/select.py:735 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:735: PyparsingDeprecationWarning: 'setParseAction' deprecated - use 'set_parse_action' PP_SCHARS.setParseAction(specialCharsParseAction) prody/atomic/select.py:755 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:755: PyparsingDeprecationWarning: 'setParseAction' deprecated - use 'set_parse_action' PP_REGEXP.setParseAction(regularExpParseAction) prody/atomic/select.py:804 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:804: PyparsingDeprecationWarning: 'setParseAction' deprecated - use 'set_parse_action' PP_NRANGE.setParseAction(rangeParseAction) prody/sequence/analysis.py:174 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/sequence/analysis.py:174: SyntaxWarning: "\{" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\{"? A raw string is also an option. * ``'minent'``: :math:`min\{H(X), H(Y)\}`, minimum entropy prody/proteins/dssp.py:87 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/proteins/dssp.py:87: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option. * *dssp_acc*: number of water molecules in contact with this residue \*10. prody/dynamics/pca.py:79 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/dynamics/pca.py:79: SyntaxWarning: "\_" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\_"? A raw string is also an option. treated specially. Let's say **C**\_ij is the element of the ../../../../../../usr/lib/python3/dist-packages/zombie_imp/__init__.py:1 /usr/lib/python3/dist-packages/zombie_imp/__init__.py:1: DeprecationWarning: the imp module was removed in favour of importlib. Someone brought it back, but it's not a good idea to use it. from .imp_3_11 import * prody/tests/apps/test_prody_anm.py:40 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_anm.py:40: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/apps/test_prody_catdcd.py:35 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_catdcd.py:35: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/apps/test_prody_catdcd.py:51 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_catdcd.py:51: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/apps/test_prody_catdcd.py:78 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_catdcd.py:78: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/apps/test_prody_catdcd.py:107 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_catdcd.py:107: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/apps/test_prody_catdcd.py:117 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_catdcd.py:117: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/apps/test_prody_catdcd.py:127 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_catdcd.py:127: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/apps/test_prody_catdcd.py:136 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_catdcd.py:136: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/apps/test_prody_examples.py:63 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_examples.py:63: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/apps/test_prody_gnm.py:39 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_gnm.py:39: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/apps/test_prody_pca.py:43 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_pca.py:43: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/apps/test_prody_pca.py:60 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/apps/test_prody_pca.py:60: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/compounds/pdbligands.py:142 prody/compounds/pdbligands.py:142 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/compounds/pdbligands.py:142: DeprecationWarning: Testing an element's truth value will always return True in future versions. Use specific 'len(elem)' or 'elem is not None' test instead. if results: prody/compounds/pdbligands.py:145 prody/compounds/pdbligands.py:145 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/compounds/pdbligands.py:145: DeprecationWarning: Testing an element's truth value will always return True in future versions. Use specific 'len(elem)' or 'elem is not None' test instead. if results: prody/compounds/pdbligands.py:224 prody/compounds/pdbligands.py:224 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/compounds/pdbligands.py:224: DeprecationWarning: Testing an element's truth value will always return True in future versions. Use specific 'len(elem)' or 'elem is not None' test instead. for bond in list(root.find(ns + 'chem_comp_bondCategory') or bonds): prody/tests/atomic/test_select.py:478 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/atomic/test_select.py:478: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_dssp.py:19 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_dssp.py:19: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_dssp.py:25 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_dssp.py:25: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_fixer.py:28 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_fixer.py:28: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_localpdb.py:23 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_localpdb.py:23: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_localpdb.py:29 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_localpdb.py:29: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_localpdb.py:39 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_localpdb.py:39: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_localpdb.py:51 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_localpdb.py:51: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_localpdb.py:73 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_localpdb.py:73: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_pdbfile.py:277 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:277: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_pdbfile.py:309 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:309: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_pdbfile.py:325 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:325: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_pdbfile.py:351 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:351: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_pdbfile.py:377 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:377: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_pdbfile.py:386 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:386: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_pdbfile.py:395 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:395: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_pdbfile.py:409 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:409: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_pdbfile.py:439 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:439: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_pdbfile.py:499 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:499: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_pdbfile.py:509 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:509: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_pdbfile.py:526 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:526: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_pdbfile.py:543 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_pdbfile.py:543: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_waterbridges.py:43 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_waterbridges.py:43: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_waterbridges.py:66 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_waterbridges.py:66: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_waterbridges.py:88 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_waterbridges.py:88: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_waterbridges.py:103 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_waterbridges.py:103: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_wwpdb.py:29 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_wwpdb.py:29: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/proteins/test_wwpdb.py:46 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/tests/proteins/test_wwpdb.py:46: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @dec.slow prody/tests/atomic/test_select.py: 35 warnings prody/tests/ensemble/test_ensemble.py: 1 warning prody/tests/proteins/test_ciffile.py: 3 warnings prody/tests/proteins/test_waterbridges.py: 3 warnings /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1100: PyparsingDeprecationWarning: 'infixNotation' deprecated - use 'infix_notation' parser = operatorPrecedence(expr, oplist) prody/tests/atomic/test_select.py: 35 warnings prody/tests/ensemble/test_ensemble.py: 1 warning prody/tests/proteins/test_ciffile.py: 3 warnings prody/tests/proteins/test_waterbridges.py: 3 warnings /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1101: PyparsingDeprecationWarning: 'setParseAction' deprecated - use 'set_parse_action' parser.setParseAction(self._default) prody/tests/atomic/test_select.py: 35 warnings prody/tests/ensemble/test_ensemble.py: 1 warning prody/tests/proteins/test_ciffile.py: 3 warnings prody/tests/proteins/test_waterbridges.py: 3 warnings /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1102: PyparsingDeprecationWarning: 'leaveWhitespace' deprecated - use 'leave_whitespace' parser.leaveWhitespace() prody/tests/atomic/test_select.py: 35 warnings prody/tests/ensemble/test_ensemble.py: 1 warning prody/tests/proteins/test_ciffile.py: 3 warnings prody/tests/proteins/test_waterbridges.py: 3 warnings /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1103: PyparsingDeprecationWarning: 'enablePackrat' deprecated - use 'enable_packrat' parser.enablePackrat() prody/tests/atomic/test_select.py: 272 warnings prody/tests/ensemble/test_ensemble.py: 2 warnings prody/tests/ensemble/test_functions.py: 1 warning prody/tests/proteins/test_ciffile.py: 3 warnings prody/tests/proteins/test_waterbridges.py: 25 warnings /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1005: PyparsingDeprecationWarning: 'parseString' deprecated - use 'parse_string' tokens = parser(selstr, parseAll=True) prody/tests/atomic/test_select.py: 272 warnings prody/tests/ensemble/test_ensemble.py: 2 warnings prody/tests/ensemble/test_functions.py: 1 warning prody/tests/proteins/test_ciffile.py: 3 warnings prody/tests/proteins/test_waterbridges.py: 25 warnings /usr/lib/python3/dist-packages/pyparsing/util.py:466: PyparsingDeprecationWarning: 'parseAll' argument is deprecated, use 'parse_all' return fn(self, *args, **kwargs) prody/tests/atomic/test_select.py: 9 warnings prody/tests/proteins/test_waterbridges.py: 2 warnings /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1082: PyparsingDeprecationWarning: 'oneOf' deprecated - use 'one_of' (pp.oneOf('+ -'), 1, pp.opAssoc.RIGHT, self._sign), prody/tests/atomic/test_select.py: 9 warnings prody/tests/proteins/test_waterbridges.py: 2 warnings /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1083: PyparsingDeprecationWarning: 'oneOf' deprecated - use 'one_of' (pp.oneOf('** ^'), 2, pp.opAssoc.LEFT, self._pow), prody/tests/atomic/test_select.py: 9 warnings prody/tests/proteins/test_waterbridges.py: 2 warnings /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1084: PyparsingDeprecationWarning: 'oneOf' deprecated - use 'one_of' (pp.oneOf('* / %'), 2, pp.opAssoc.LEFT, self._binop), prody/tests/atomic/test_select.py: 9 warnings prody/tests/proteins/test_waterbridges.py: 2 warnings /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1085: PyparsingDeprecationWarning: 'oneOf' deprecated - use 'one_of' (pp.oneOf('+ -'), 2, pp.opAssoc.LEFT, self._binop), prody/tests/atomic/test_select.py: 9 warnings prody/tests/proteins/test_waterbridges.py: 2 warnings /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:1086: PyparsingDeprecationWarning: 'oneOf' deprecated - use 'one_of' (pp.oneOf('< > <= >= == = !='), 2, pp.opAssoc.LEFT, prody/tests/atomic/test_select.py::TestSelect::testRangeSelection203 prody/tests/atomic/test_select.py::TestSelect::testRangeSelection204 prody/tests/atomic/test_select.py::TestSelect::testRangeSelection209 prody/tests/atomic/test_select.py::TestSelect::testRangeSelection209 prody/tests/atomic/test_select.py::TestSelect::testRangeSelection210 prody/tests/atomic/test_select.py::TestSelect::testRangeSelection210 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build/prody/atomic/select.py:730: PyparsingDeprecationWarning: 'parseString' deprecated - use 'parse_string' token = PP_NRANGE.parseString(token)[0] -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED prody/tests/atomic/test_select.py::TestSelect::testCompositeSelection301 FAILED prody/tests/atomic/test_select.py::TestSelect::testCompositeSelection302 FAILED prody/tests/atomic/test_select.py::TestSelect::testCompositeSelection303 FAILED prody/tests/atomic/test_select.py::TestSelect::testCompositeSelection304 FAILED prody/tests/atomic/test_select.py::TestSelect::testEquivalentSelection405 FAILED prody/tests/atomic/test_select.py::TestSelect::testEquivalentSelection406 FAILED prody/tests/atomic/test_select.py::TestSelect::testLogicalSelection369 FAILED prody/tests/atomic/test_select.py::TestSelect::testLogicalSelection370 FAILED prody/tests/atomic/test_select.py::TestSelect::testLogicalSelection371 FAILED prody/tests/atomic/test_select.py::TestSelect::testLogicalSelection372 FAILED prody/tests/atomic/test_select.py::TestSelect::testLogicalSelection375 FAILED prody/tests/atomic/test_select.py::TestSelect::testLogicalSelection376 FAILED prody/tests/atomic/test_select.py::TestSelect::testLogicalSelection377 FAILED prody/tests/atomic/test_select.py::TestSelect::testLogicalSelection378 FAILED prody/tests/atomic/test_select.py::TestSelect::testLogicalSelection389 FAILED prody/tests/atomic/test_select.py::TestSelect::testLogicalSelection390 FAILED prody/tests/ensemble/test_functions.py::TestBuildPDBEnsemble::testResults FAILED prody/tests/proteins/test_ciffile.py::TestParseMMCIF::testBiomolOperationRange FAILED prody/tests/proteins/test_ciffile.py::TestParseMMCIF::testChimeraxCIFBiomolArguments FAILED prody/tests/proteins/test_ciffile.py::TestParseMMCIF::testUniteChainsAndBiomolArguments ==== 20 failed, 932 passed, 56 skipped, 891 warnings in 1764.69s (0:29:24) ===== E: pybuild pybuild:485: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_prody/build; python3.14 -m pytest dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.14 --parallel=1 returned exit code 13 make: *** [debian/rules:9: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 --------------------------------------------------------------------------------
