Your message dated Thu, 15 Oct 2026 08:52:07 +0000
with message-id <[email protected]>
and subject line Bug#1150529: fixed in python-cogent 2026.9.10-1
has caused the Debian Bug report #1150529,
regarding python-cogent: FTBFS: E sqlite3.OperationalError: unable to open
database file
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
1150529: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1150529
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:python-cogent
Version: 2026.6.2a0+dfsg-3
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202610/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-cogent, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
/usr/lib/python3/dist-packages/scinexus/sqlite_data_store.py:76: in
open_sqlite_db_rw
db = _connect_sqlite_db_rw(path)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/lib/python3/dist-packages/scinexus/sqlite_data_store.py:83: in
_connect_sqlite_db_rw
db = sqlite3.connect(
E sqlite3.OperationalError: unable to open database file
=============================== warnings summary ===============================
../../../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1624
/usr/lib/python3/dist-packages/_pytest/config/__init__.py:1624:
PytestConfigWarning: No files were found in testpaths; consider removing or
adjusting your testpaths configuration. Searching recursively from the current
directory instead.
self.args, self.args_source = self._decide_args(
../../../../../../usr/lib/python3/dist-packages/_pytest/python.py:124
/usr/lib/python3/dist-packages/_pytest/python.py:124:
PytestRemovedIn10Warning: Passing a non-Collection iterable to parametrize is
deprecated.
Test: tests/test_evolve/test_coevolution.py::test_joint_entropies, argvalues
type: combinations
Please convert to a list or tuple.
See https://docs.pytest.org/en/stable/deprecations.html#parametrize-iterators
metafunc.parametrize(*marker.args, **marker.kwargs, _param_mark=marker)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
ERROR tests/test_app/test_init.py - sqlite3.OperationalError: unable to open ...
!!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!!
================== 3 deselected, 2 warnings, 1 error in 8.44s ==================
E: pybuild pybuild:485: test: plugin pyproject failed with: exit code=2: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_cogent3/build; python3.14 -m pytest
--ignore=test_app/test_plugins.py -k 'not test_pickleable_member_roundtrip and
not test_pickleable_roundtrip and not internet and not test_load_from_url '
dh_auto_test: error: pybuild --test -i python{version} -p 3.14 --parallel=1
returned exit code 13
make: *** [debian/rules:30: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit
status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: python-cogent
Source-Version: 2026.9.10-1
Done: Karsten Schöke <[email protected]>
We believe that the bug you reported is fixed in the latest version of
python-cogent, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Karsten Schöke <[email protected]> (supplier of updated
python-cogent package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 15 Oct 2026 07:33:43 +0200
Source: python-cogent
Architecture: source
Version: 2026.9.10-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Karsten Schöke <[email protected]>
Closes: 1150529
Changes:
python-cogent (2026.9.10-1) unstable; urgency=medium
.
* Team upload.
* New upstream version 2026.9.10
* d/patches: rebuild and remove obsolete patches
- Use-package-version-instead-of-date-based-Sphinx.patch
- Work-around-failure-in-sphinx-doc-processing.patch
* d/tests: insert test-init-mkdir.patch Closes: #1150529
* d/copyright: upstream change license from GPL-2 to BSD-3-Clause
* Drop the binary python3-cogent3-doc package: the documentation is
now written in Quarto (doc/**/*.qmd), and the quarto CLI is not available
in Debian. The docs are kept in the source package until quarto is
packaged.
* Reflow Uploaders field (cme)
* Remove trailing whitespace in debian/copyright (routine-update)
* Set upstream metadata fields: Documentation.
* debputy lint --auto-fix (routine-update)
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