Bug#1149286: marked as done (rdkit: FTBFS with boost 1.92)

Debian Bug Tracking System Tue, 20 Oct 2026 22:21:22 -0700

Your message dated Wed, 21 Oct 2026 05:19:19 +0000
with message-id <[email protected]>
and subject line Bug#1149286: fixed in rdkit 202609.1-1
has caused the Debian Bug report #1149286,
regarding rdkit: FTBFS with boost 1.92
to be marked as done.


This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
1149286: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1149286
Debian Bug Tracking System
Contact [email protected] with problems

--- Begin Message ---

Package: src:rdkit
Version: 202603.4-2
Severity: important
Tags: sid forky ftbfs
User: [email protected]
Usertags: boost1.92

Dear Maintainer,

Boost 1.92 will most likely be the default boost version in the
upcoming Debian 14 (forky) release.

rdkit FTBFS with boost 1.92. Note that the FTBFS may not necessarily be
connected to boost - please check the build log for the actual cause.

boost-defaults pointing to 1.92 is available in experimental, so you can
rebuild your package against it to reproduce the failure and test the fix.

Note: This ticket severity will be increased to RC bug when
boost-defaults is switched to 1.92.

If your package depends on versioned boost packages (e.g. libboost1.90-dev),
please switch to the unversioned (default) ones (e.g. libboost-dev), so the
package follows future boost transitions automatically.

Here is the most probably relevant part of the failing build log:

==================== build log ====================
[  3%] Building CXX object 
Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o
cd 
/build/reproducible-path/rdkit-202603.4/obj-x86_64-linux-gnu/Code/DataStructs 
&& /usr/bin/x86_64-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB 
-DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_CONTAINER_DYN_LINK 
-DBOOST_CONTAINER_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB 
-DBOOST_EXCEPTION_NO_LIB=1 -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB 
-DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK 
-DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK 
-DBOOST_SERIALIZATION_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB 
-DBOOST_THREAD_USE_DLL -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD 
-DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D 
-DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS 
-DRDK_BUILD_XYZ2MOL_SUPPORT -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED 
-DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION 
-DRDK_USE_STRICT_ROTOR_DEFINITION 
-I/build/reproducible-path/rdkit-202603.4/External 
-I/build/reproducible-path/rdkit
 -202603.4/Code -isystem /usr/include/eigen3 -g -O2 
-ffile-prefix-map=/build/reproducible-path/rdkit-202603.4=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 
-Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function 
-fno-strict-aliasing -Wall -Wextra -fPIC -std=gnu++20 -MD -MT 
Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -MF 
CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o.d -o 
CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c 
/build/reproducible-path/rdkit-202603.4/Code/DataStructs/testDatastructs.cpp
In file included from 
/usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
                 from 
/build/reproducible-path/rdkit-202603.4/Code/RDBoost/python.h:5,
                 from 
/build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap/RDBase.cpp:10:
/usr/include/boost/python/suite/indexing/indexing_suite.hpp: In instantiation 
of âstatic void boost::python::indexing_suite<Container, DerivedPolicies, 
NoProxy, NoSlice, Data, Index, Key>::base_clear(Container&) [with Container = 
std::__cxx11::list<int>; DerivedPolicies = 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, 
true>; bool NoProxy = true; bool NoSlice = false; Data = int; Index = long 
unsigned int; Key = int]â:
/usr/include/boost/python/suite/indexing/indexing_suite.hpp:187:31:   required 
from âvoid boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, 
NoSlice, Data, Index, Key>::visit(Class&) const [with Class = 
boost::python::class_<std::__cxx11::list<int>, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>; Container = std::__cxx11::list<int>; 
DerivedPolicies = 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, 
true>; bool NoProxy = true; bool NoSlice = false; Data = int; Index = long 
unsigned int; Key = int]â
  187 |                 .def("clear", &base_clear)
      |                               ^~~~~~~~~~~
/usr/include/boost/python/def_visitor.hpp:31:34:   required from âstatic void 
boost::python::def_visitor_access::visit(const V&, classT&) [with V = 
boost::python::def_visitor<boost::python::indexing_suite<std::__cxx11::list<int>,
 boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, 
true>, true, false, int, long unsigned int, int> >; classT = 
boost::python::class_<std::__cxx11::list<int>, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>]â
   31 |         v.derived_visitor().visit(c);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/boost/python/def_visitor.hpp:67:34:   required from âvoid 
boost::python::def_visitor<DerivedVisitor>::visit(classT&) const [with classT = 
boost::python::class_<std::__cxx11::list<int>, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>; DerivedVisitor = 
boost::python::indexing_suite<std::__cxx11::list<int>, 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, 
true>, true, false, int, long unsigned int, int>]â
   67 |         def_visitor_access::visit(*this, c);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/python/class.hpp:221:22:   required from 
âboost::python::class_<T, X1, X2, X3>::self& boost::python::class_<T, X1, X2, 
X3>::def(const boost::python::def_visitor<Derived>&) [with Derived = 
boost::python::indexing_suite<std::__cxx11::list<int>, 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, 
true>, true, false, int, long unsigned int, int>; W = std::__cxx11::list<int>; 
X1 = boost::python::detail::not_specified; X2 = 
boost::python::detail::not_specified; X3 = 
boost::python::detail::not_specified; self = 
boost::python::class_<std::__cxx11::list<int>, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>]â
  221 |         visitor.visit(*this);
      |         ~~~~~~~~~~~~~^~~~~~~
/build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap.h:125:13:   required 
from âvoid RegisterListConverter(bool) [with T = int]â
  124 |     python::class_<std::list<T>>(name.c_str())
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  125 |         .def(python::list_indexing_suite<std::list<T>, 1>());
      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap/RDBase.cpp:360:29:   
required from here
  360 |   RegisterListConverter<int>();
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/python/suite/indexing/indexing_suite.hpp:296:42: error: 
âclearâ is not a member of 
âboost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, 
true>â
  296 |             return DerivedPolicies::clear(container);
      |                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/usr/include/boost/python/suite/indexing/indexing_suite.hpp: In instantiation 
of âstatic void boost::python::indexing_suite<Container, DerivedPolicies, 
NoProxy, NoSlice, Data, Index, Key>::base_clear(Container&) [with Container = 
std::__cxx11::list<int>; DerivedPolicies = 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, 
false>; bool NoProxy = false; bool NoSlice = false; Data = int; Index = long 
unsigned int; Key = int]â:
/usr/include/boost/python/suite/indexing/indexing_suite.hpp:187:31:   required 
from âvoid boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, 
NoSlice, Data, Index, Key>::visit(Class&) const [with Class = 
boost::python::class_<std::__cxx11::list<int>, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>; Container = std::__cxx11::list<int>; 
DerivedPolicies = 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, 
false>; bool NoProxy = false; bool NoSlice = false; Data = int; Index = long 
unsigned int; Key = int]â
  187 |                 .def("clear", &base_clear)
      |                               ^~~~~~~~~~~
/usr/include/boost/python/def_visitor.hpp:31:34:   required from âstatic void 
boost::python::def_visitor_access::visit(const V&, classT&) [with V = 
boost::python::def_visitor<boost::python::indexing_suite<std::__cxx11::list<int>,
 boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, 
false>, false, false, int, long unsigned int, int> >; classT = 
boost::python::class_<std::__cxx11::list<int>, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>]â
   31 |         v.derived_visitor().visit(c);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/boost/python/def_visitor.hpp:67:34:   required from âvoid 
boost::python::def_visitor<DerivedVisitor>::visit(classT&) const [with classT = 
boost::python::class_<std::__cxx11::list<int>, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>; DerivedVisitor = 
boost::python::indexing_suite<std::__cxx11::list<int>, 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, 
false>, false, false, int, long unsigned int, int>]â
   67 |         def_visitor_access::visit(*this, c);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/python/class.hpp:221:22:   required from 
âboost::python::class_<T, X1, X2, X3>::self& boost::python::class_<T, X1, X2, 
X3>::def(const boost::python::def_visitor<Derived>&) [with Derived = 
boost::python::indexing_suite<std::__cxx11::list<int>, 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, 
false>, false, false, int, long unsigned int, int>; W = 
std::__cxx11::list<int>; X1 = boost::python::detail::not_specified; X2 = 
boost::python::detail::not_specified; X3 = 
boost::python::detail::not_specified; self = 
boost::python::class_<std::__cxx11::list<int>, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>]â
  221 |         visitor.visit(*this);
      |         ~~~~~~~~~~~~~^~~~~~~
/build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap.h:128:13:   required 
from âvoid RegisterListConverter(bool) [with T = int]â
  127 |     python::class_<std::list<T>>(name.c_str())
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  128 |         .def(python::list_indexing_suite<std::list<T>>());
      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap/RDBase.cpp:360:29:   
required from here
  360 |   RegisterListConverter<int>();
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/python/suite/indexing/indexing_suite.hpp:296:42: error: 
âclearâ is not a member of 
âboost::python::detail::final_list_derived_policies<std::__cxx11::list<int>, 
false>â
  296 |             return DerivedPolicies::clear(container);
      |                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/usr/include/boost/python/suite/indexing/indexing_suite.hpp: In instantiation 
of âstatic void boost::python::indexing_suite<Container, DerivedPolicies, 
NoProxy, NoSlice, Data, Index, Key>::base_clear(Container&) [with Container = 
std::__cxx11::list<std::vector<int> >; DerivedPolicies = 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int>
 >, true>; bool NoProxy = true; bool NoSlice = false; Data = std::vector<int>; 
Index = long unsigned int; Key = std::vector<int>]â:
/usr/include/boost/python/suite/indexing/indexing_suite.hpp:187:31:   required 
from âvoid boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, 
NoSlice, Data, Index, Key>::visit(Class&) const [with Class = 
boost::python::class_<std::__cxx11::list<std::vector<int> >, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>; Container = 
std::__cxx11::list<std::vector<int> >; DerivedPolicies = 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int>
 >, true>; bool NoProxy = true; bool NoSlice = false; Data = std::vector<int>; 
Index = long unsigned int; Key = std::vector<int>]â
  187 |                 .def("clear", &base_clear)
      |                               ^~~~~~~~~~~
/usr/include/boost/python/def_visitor.hpp:31:34:   required from âstatic void 
boost::python::def_visitor_access::visit(const V&, classT&) [with V = 
boost::python::def_visitor<boost::python::indexing_suite<std::__cxx11::list<std::vector<int>
 >, 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int>
 >, true>, true, false, std::vector<int>, long unsigned int, std::vector<int> > 
>; classT = boost::python::class_<std::__cxx11::list<std::vector<int> >, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>]â
   31 |         v.derived_visitor().visit(c);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/boost/python/def_visitor.hpp:67:34:   required from âvoid 
boost::python::def_visitor<DerivedVisitor>::visit(classT&) const [with classT = 
boost::python::class_<std::__cxx11::list<std::vector<int> >, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>; DerivedVisitor = 
boost::python::indexing_suite<std::__cxx11::list<std::vector<int> >, 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int>
 >, true>, true, false, std::vector<int>, long unsigned int, std::vector<int> 
>]â
   67 |         def_visitor_access::visit(*this, c);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/python/class.hpp:221:22:   required from 
âboost::python::class_<T, X1, X2, X3>::self& boost::python::class_<T, X1, X2, 
X3>::def(const boost::python::def_visitor<Derived>&) [with Derived = 
boost::python::indexing_suite<std::__cxx11::list<std::vector<int> >, 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int>
 >, true>, true, false, std::vector<int>, long unsigned int, std::vector<int> 
>; W = std::__cxx11::list<std::vector<int> >; X1 = 
boost::python::detail::not_specified; X2 = 
boost::python::detail::not_specified; X3 = 
boost::python::detail::not_specified; self = 
boost::python::class_<std::__cxx11::list<std::vector<int> >, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>]â
  221 |         visitor.visit(*this);
      |         ~~~~~~~~~~~~~^~~~~~~
/build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap.h:125:13:   required 
from âvoid RegisterListConverter(bool) [with T = std::vector<int>]â
  124 |     python::class_<std::list<T>>(name.c_str())
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  125 |         .def(python::list_indexing_suite<std::list<T>, 1>());
      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap/RDBase.cpp:361:42:   
required from here
  361 |   RegisterListConverter<std::vector<int>>();
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/python/suite/indexing/indexing_suite.hpp:296:42: error: 
âclearâ is not a member of 
âboost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int>
 >, true>â
  296 |             return DerivedPolicies::clear(container);
      |                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/usr/include/boost/python/suite/indexing/indexing_suite.hpp: In instantiation 
of âstatic void boost::python::indexing_suite<Container, DerivedPolicies, 
NoProxy, NoSlice, Data, Index, Key>::base_clear(Container&) [with Container = 
std::__cxx11::list<std::vector<int> >; DerivedPolicies = 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int>
 >, false>; bool NoProxy = false; bool NoSlice = false; Data = 
std::vector<int>; Index = long unsigned int; Key = std::vector<int>]â:
/usr/include/boost/python/suite/indexing/indexing_suite.hpp:187:31:   required 
from âvoid boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, 
NoSlice, Data, Index, Key>::visit(Class&) const [with Class = 
boost::python::class_<std::__cxx11::list<std::vector<int> >, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>; Container = 
std::__cxx11::list<std::vector<int> >; DerivedPolicies = 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int>
 >, false>; bool NoProxy = false; bool NoSlice = false; Data = 
std::vector<int>; Index = long unsigned int; Key = std::vector<int>]â
  187 |                 .def("clear", &base_clear)
      |                               ^~~~~~~~~~~
/usr/include/boost/python/def_visitor.hpp:31:34:   required from âstatic void 
boost::python::def_visitor_access::visit(const V&, classT&) [with V = 
boost::python::def_visitor<boost::python::indexing_suite<std::__cxx11::list<std::vector<int>
 >, 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int>
 >, false>, false, false, std::vector<int>, long unsigned int, std::vector<int> 
> >; classT = boost::python::class_<std::__cxx11::list<std::vector<int> >, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>]â
   31 |         v.derived_visitor().visit(c);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/boost/python/def_visitor.hpp:67:34:   required from âvoid 
boost::python::def_visitor<DerivedVisitor>::visit(classT&) const [with classT = 
boost::python::class_<std::__cxx11::list<std::vector<int> >, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>; DerivedVisitor = 
boost::python::indexing_suite<std::__cxx11::list<std::vector<int> >, 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int>
 >, false>, false, false, std::vector<int>, long unsigned int, std::vector<int> 
>]â
   67 |         def_visitor_access::visit(*this, c);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/python/class.hpp:221:22:   required from 
âboost::python::class_<T, X1, X2, X3>::self& boost::python::class_<T, X1, X2, 
X3>::def(const boost::python::def_visitor<Derived>&) [with Derived = 
boost::python::indexing_suite<std::__cxx11::list<std::vector<int> >, 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int>
 >, false>, false, false, std::vector<int>, long unsigned int, std::vector<int> 
>; W = std::__cxx11::list<std::vector<int> >; X1 = 
boost::python::detail::not_specified; X2 = 
boost::python::detail::not_specified; X3 = 
boost::python::detail::not_specified; self = 
boost::python::class_<std::__cxx11::list<std::vector<int> >, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>]â
  221 |         visitor.visit(*this);
      |         ~~~~~~~~~~~~~^~~~~~~
/build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap.h:128:13:   required 
from âvoid RegisterListConverter(bool) [with T = std::vector<int>]â
  127 |     python::class_<std::list<T>>(name.c_str())
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  128 |         .def(python::list_indexing_suite<std::list<T>>());
      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap/RDBase.cpp:361:42:   
required from here
  361 |   RegisterListConverter<std::vector<int>>();
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/python/suite/indexing/indexing_suite.hpp:296:42: error: 
âclearâ is not a member of 
âboost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<int>
 >, false>â
  296 |             return DerivedPolicies::clear(container);
      |                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/usr/include/boost/python/suite/indexing/indexing_suite.hpp: In instantiation 
of âstatic void boost::python::indexing_suite<Container, DerivedPolicies, 
NoProxy, NoSlice, Data, Index, Key>::base_clear(Container&) [with Container = 
std::__cxx11::list<std::vector<unsigned int>, 
std::allocator<std::vector<unsigned int> > >; DerivedPolicies = 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned
 int>, std::allocator<std::vector<unsigned int> > >, true>; bool NoProxy = 
true; bool NoSlice = false; Data = std::vector<unsigned int>; Index = long 
unsigned int; Key = std::vector<unsigned int>]â:
/usr/include/boost/python/suite/indexing/indexing_suite.hpp:187:31:   required 
from âvoid boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, 
NoSlice, Data, Index, Key>::visit(Class&) const [with Class = 
boost::python::class_<std::__cxx11::list<std::vector<unsigned int>, 
std::allocator<std::vector<unsigned int> > >, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>; Container = 
std::__cxx11::list<std::vector<unsigned int>, 
std::allocator<std::vector<unsigned int> > >; DerivedPolicies = 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned
 int>, std::allocator<std::vector<unsigned int> > >, true>; bool NoProxy = 
true; bool NoSlice = false; Data = std::vector<unsigned int>; Index = long 
unsigned int; Key = std::vector<unsigned int>]â
  187 |                 .def("clear", &base_clear)
      |                               ^~~~~~~~~~~
/usr/include/boost/python/def_visitor.hpp:31:34:   required from âstatic void 
boost::python::def_visitor_access::visit(const V&, classT&) [with V = 
boost::python::def_visitor<boost::python::indexing_suite<std::__cxx11::list<std::vector<unsigned
 int>, std::allocator<std::vector<unsigned int> > >, 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned
 int>, std::allocator<std::vector<unsigned int> > >, true>, true, false, 
std::vector<unsigned int>, long unsigned int, std::vector<unsigned int> > >; 
classT = boost::python::class_<std::__cxx11::list<std::vector<unsigned int>, 
std::allocator<std::vector<unsigned int> > >, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>]â
   31 |         v.derived_visitor().visit(c);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/boost/python/def_visitor.hpp:67:34:   required from âvoid 
boost::python::def_visitor<DerivedVisitor>::visit(classT&) const [with classT = 
boost::python::class_<std::__cxx11::list<std::vector<unsigned int>, 
std::allocator<std::vector<unsigned int> > >, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>; DerivedVisitor = 
boost::python::indexing_suite<std::__cxx11::list<std::vector<unsigned int>, 
std::allocator<std::vector<unsigned int> > >, 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned
 int>, std::allocator<std::vector<unsigned int> > >, true>, true, false, 
std::vector<unsigned int>, long unsigned int, std::vector<unsigned int> >]â
   67 |         def_visitor_access::visit(*this, c);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/python/class.hpp:221:22:   required from 
âboost::python::class_<T, X1, X2, X3>::self& boost::python::class_<T, X1, X2, 
X3>::def(const boost::python::def_visitor<Derived>&) [with Derived = 
boost::python::indexing_suite<std::__cxx11::list<std::vector<unsigned int>, 
std::allocator<std::vector<unsigned int> > >, 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned
 int>, std::allocator<std::vector<unsigned int> > >, true>, true, false, 
std::vector<unsigned int>, long unsigned int, std::vector<unsigned int> >; W = 
std::__cxx11::list<std::vector<unsigned int>, 
std::allocator<std::vector<unsigned int> > >; X1 = 
boost::python::detail::not_specified; X2 = 
boost::python::detail::not_specified; X3 = 
boost::python::detail::not_specified; self = 
boost::python::class_<std::__cxx11::list<std::vector<unsigned int>, 
std::allocator<std::vector<unsigned int> > >, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::
 python::detail::not_specified>]â
  221 |         visitor.visit(*this);
      |         ~~~~~~~~~~~~~^~~~~~~
/build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap.h:125:13:   required 
from âvoid RegisterListConverter(bool) [with T = std::vector<unsigned int>]â
  124 |     python::class_<std::list<T>>(name.c_str())
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  125 |         .def(python::list_indexing_suite<std::list<T>, 1>());
      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap/RDBase.cpp:362:51:   
required from here
  362 |   RegisterListConverter<std::vector<unsigned int>>();
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/python/suite/indexing/indexing_suite.hpp:296:42: error: 
âclearâ is not a member of 
âboost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned
 int>, std::allocator<std::vector<unsigned int> > >, true>â
  296 |             return DerivedPolicies::clear(container);
      |                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/usr/include/boost/python/suite/indexing/indexing_suite.hpp: In instantiation 
of âstatic void boost::python::indexing_suite<Container, DerivedPolicies, 
NoProxy, NoSlice, Data, Index, Key>::base_clear(Container&) [with Container = 
std::__cxx11::list<std::vector<unsigned int>, 
std::allocator<std::vector<unsigned int> > >; DerivedPolicies = 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned
 int>, std::allocator<std::vector<unsigned int> > >, false>; bool NoProxy = 
false; bool NoSlice = false; Data = std::vector<unsigned int>; Index = long 
unsigned int; Key = std::vector<unsigned int>]â:
/usr/include/boost/python/suite/indexing/indexing_suite.hpp:187:31:   required 
from âvoid boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, 
NoSlice, Data, Index, Key>::visit(Class&) const [with Class = 
boost::python::class_<std::__cxx11::list<std::vector<unsigned int>, 
std::allocator<std::vector<unsigned int> > >, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>; Container = 
std::__cxx11::list<std::vector<unsigned int>, 
std::allocator<std::vector<unsigned int> > >; DerivedPolicies = 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned
 int>, std::allocator<std::vector<unsigned int> > >, false>; bool NoProxy = 
false; bool NoSlice = false; Data = std::vector<unsigned int>; Index = long 
unsigned int; Key = std::vector<unsigned int>]â
  187 |                 .def("clear", &base_clear)
      |                               ^~~~~~~~~~~
/usr/include/boost/python/def_visitor.hpp:31:34:   required from âstatic void 
boost::python::def_visitor_access::visit(const V&, classT&) [with V = 
boost::python::def_visitor<boost::python::indexing_suite<std::__cxx11::list<std::vector<unsigned
 int>, std::allocator<std::vector<unsigned int> > >, 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned
 int>, std::allocator<std::vector<unsigned int> > >, false>, false, false, 
std::vector<unsigned int>, long unsigned int, std::vector<unsigned int> > >; 
classT = boost::python::class_<std::__cxx11::list<std::vector<unsigned int>, 
std::allocator<std::vector<unsigned int> > >, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>]â
   31 |         v.derived_visitor().visit(c);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/boost/python/def_visitor.hpp:67:34:   required from âvoid 
boost::python::def_visitor<DerivedVisitor>::visit(classT&) const [with classT = 
boost::python::class_<std::__cxx11::list<std::vector<unsigned int>, 
std::allocator<std::vector<unsigned int> > >, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost::python::detail::not_specified>; DerivedVisitor = 
boost::python::indexing_suite<std::__cxx11::list<std::vector<unsigned int>, 
std::allocator<std::vector<unsigned int> > >, 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned
 int>, std::allocator<std::vector<unsigned int> > >, false>, false, false, 
std::vector<unsigned int>, long unsigned int, std::vector<unsigned int> >]â
   67 |         def_visitor_access::visit(*this, c);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/python/class.hpp:221:22:   required from 
âboost::python::class_<T, X1, X2, X3>::self& boost::python::class_<T, X1, X2, 
X3>::def(const boost::python::def_visitor<Derived>&) [with Derived = 
boost::python::indexing_suite<std::__cxx11::list<std::vector<unsigned int>, 
std::allocator<std::vector<unsigned int> > >, 
boost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned
 int>, std::allocator<std::vector<unsigned int> > >, false>, false, false, 
std::vector<unsigned int>, long unsigned int, std::vector<unsigned int> >; W = 
std::__cxx11::list<std::vector<unsigned int>, 
std::allocator<std::vector<unsigned int> > >; X1 = 
boost::python::detail::not_specified; X2 = 
boost::python::detail::not_specified; X3 = 
boost::python::detail::not_specified; self = 
boost::python::class_<std::__cxx11::list<std::vector<unsigned int>, 
std::allocator<std::vector<unsigned int> > >, 
boost::python::detail::not_specified, boost::python::detail::not_specified, 
boost
 ::python::detail::not_specified>]â
  221 |         visitor.visit(*this);
      |         ~~~~~~~~~~~~~^~~~~~~
/build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap.h:128:13:   required 
from âvoid RegisterListConverter(bool) [with T = std::vector<unsigned int>]â
  127 |     python::class_<std::list<T>>(name.c_str())
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  128 |         .def(python::list_indexing_suite<std::list<T>>());
      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/rdkit-202603.4/Code/RDBoost/Wrap/RDBase.cpp:362:51:   
required from here
  362 |   RegisterListConverter<std::vector<unsigned int>>();
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/python/suite/indexing/indexing_suite.hpp:296:42: error: 
âclearâ is not a member of 
âboost::python::detail::final_list_derived_policies<std::__cxx11::list<std::vector<unsigned
 int>, std::allocator<std::vector<unsigned int> > >, false>â
  296 |             return DerivedPolicies::clear(container);
      |                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
make[4]: *** [Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make:82: 
Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o] Error 1
make[4]: Leaving directory 
'/build/reproducible-path/rdkit-202603.4/obj-x86_64-linux-gnu'
make[3]: *** [CMakeFiles/Makefile2:5344: 
Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/all] Error 2
make[3]: *** Waiting for unfinished jobs....
[  3%] Linking CXX executable testDataStructs
cd 
/build/reproducible-path/rdkit-202603.4/obj-x86_64-linux-gnu/Code/DataStructs 
&& /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt 
--verbose=1
/usr/bin/x86_64-linux-gnu-g++ -g -O2 
-ffile-prefix-map=/build/reproducible-path/rdkit-202603.4=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 
-Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function 
-fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -Wl,-z,now 
-Wl,--dependency-file=CMakeFiles/testDataStructs.dir/link.d 
CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs  
../RDGeneral/librdkitCatch.a ../../lib/libRDKitDataStructs.so.1.2026.03.4 
/usr/lib/libCatch2.a ../../lib/libRDKitRDGeneral.so.1.2026.03.4 
/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.92.0 
/usr/lib/x86_64-linux-gnu/libboost_thread.so.1.92.0 
/usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.92.0 
/usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.92.0 
/usr/lib/x86_64-linux-gnu/libboost_date_time.so.1.92.0 
/usr/lib/x86_64-linux-gnu/libboost_container.so.1.92.0 
/usr/lib/x86_64-linux-gnu/libboost_excep
 tion.a /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.92.0 
/usr/lib/x86_64-linux-gnu/libboost_random.so.1.92.0 
/usr/lib/x86_64-linux-gnu/libboost_regex.so.1.92.0 -ldl
make[4]: Leaving directory 
'/build/reproducible-path/rdkit-202603.4/obj-x86_64-linux-gnu'
[  3%] Built target testDataStructs
make[3]: Leaving directory 
'/build/reproducible-path/rdkit-202603.4/obj-x86_64-linux-gnu'
make[2]: *** [Makefile:169: all] Error 2
make[2]: Leaving directory 
'/build/reproducible-path/rdkit-202603.4/obj-x86_64-linux-gnu'
dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j2 INSTALL="install 
--strip-program=true" VERBOSE=1 returned exit code 2
make[1]: *** [debian/rules:103: override_dh_auto_build] Error 25
make[1]: Leaving directory '/build/reproducible-path/rdkit-202603.4'
make: *** [debian/rules:49: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit 
status 2

==================== end of build log =============

Thanks,

Anton Gladky

--- End Message ---

--- Begin Message ---

Source: rdkit
Source-Version: 202609.1-1
Done: Andrius Merkys <[email protected]>

We believe that the bug you reported is fixed in the latest version of
rdkit, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andrius Merkys <[email protected]> (supplier of updated rdkit package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])


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Hash: SHA512

Format: 1.8
Date: Wed, 21 Oct 2026 00:47:41 -0400
Source: rdkit
Architecture: source
Version: 202609.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <[email protected]>
Changed-By: Andrius Merkys <[email protected]>
Closes: 1149286
Changes:
 rdkit (202609.1-1) unstable; urgency=medium
 .
   * New upstream version 202609.1 (Closes: #1149286)
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--- End Message ---

Bug#1149286: marked as done (rdkit: FTBFS with boost 1.92)

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