-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 23 Oct 2014 23:42:18 +0200 Source: debian-med Binary: med-tasks med-config med-bio med-bio-dev med-cloud med-data med-dental med-epi med-his med-imaging med-imaging-dev med-oncology med-pharmacy med-physics med-practice med-psychology med-rehabilitation med-statistics med-tools med-typesetting Architecture: source all Version: 1.99 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: med-bio - Debian Med micro-biology packages med-bio-dev - Debian Med packages for development of micro-biology applications med-cloud - Debian Med bioinformatics applications usable in cloud computing med-config - Debian Med general config package med-data - Debian Med drug databases med-dental - Debian Med packages related to dental practice med-epi - Debian Med epidemiology related packages med-his - Debian Med suggestions for Hospital Information Systems med-imaging - Debian Med imaging packages med-imaging-dev - Debian Med packages for medical image development med-oncology - Debian Med packages for oncology med-pharmacy - Debian Med packages for pharmaceutical research med-physics - Debian Med packages for medical physicists med-practice - Debian Med packages for practice management med-psychology - Debian Med packages for psychology med-rehabilitation - Debian Med packages for rehabilitation technologies med-statistics - Debian Med statistics med-tasks - Debian Med tasks for tasksel med-tools - Debian Med several tools med-typesetting - Debian Med support for typesetting and publishing Changes: debian-med (1.99) unstable; urgency=low . * debian/control.stub: - Build-Depends: blends-dev (>= 0.6.92) to get Section: metapackage entries - cme fix dpkg-control - debhelper 9 * d/source/format: 3.0 (native) . * start of automatic changelog entry * . * Changes in metapackage dependencies -med-pharmacy added: Depends: r-cran-dosefinding -med-tools added: Depends: cronometer, python-fitbit, python3-fitbitscraper, nut-nutrition Suggests: goldencheetah removed: Suggests: cl-pubmed -med-cloud added: Depends: bagpipe, fitgcp, fastqc, biomaj, sibsim4, biosquid, pdb2pqr, soapdenovo, clonalframe, kissplice, conservation-code, mummer, gasic, datamash, t-coffee, ampliconnoise, cassiopee, snap, tabix, flexbar, zalign, parsinsert, smalt, melting, r-cran-vegan, autodock-vina, cufflinks, mafft, dialign, glam2, freecontact, probabel, mustang, amap-align, gromacs, anfo, sigma-align, giira, blast2, bowtie, phyutility, poa, dialign-tx, arden, qiime, squizz, theseus, gmap, autogrid, r-bioc-edger, cd-hit, dnaclust, idba, probcons, discosnp, prodigal, cain, sra-toolkit, clearcut, gff2ps, genometools, neobio, mrbayes, pynast, sim4, bioperl, prank, perm, prime-phylo, mira-assembler, bowtie2, vcftools, mapsembler2, r-cran-pvclust, hmmer, cdbfasta, clustalw, wise, kalign, soapdenovo2, boxshade, clustalo, python3-biopython, proda, abyss, primer3, grinder, fastx-toolkit, rtax, minia, mlv-smile, concavity, r-other-mott-happy.hbrem, ncbi-epcr, gff2aplot, macs, mothur, hhsuite, fasttree, mipe, bamtools, aragorn, bioperl-run, exonerate, jellyfish, aevol, circos, paraclu, python-biopython, muscle, dssp removed: Depends: clustalw | clustalw-mpi, r-other-mott-happy, bagphenotype -med-psychology added: Depends: python-pypsignifit Suggests: python-visionegg removed: Depends: psignifit3 Suggests: visionegg -med-bio added: Depends: bagpipe, minia, emmax, clearcut, metastudent, cassiopee, freebayes, relion-gui, r-cran-vegan, uc-echo, spades, pdb2pqr, probabel, relion-bin | relion-bin-mpi, mrs, acacia, staden, snp-sites, r-bioc-rtracklayer, kissplice, giira, aragorn, rtax, gasic, fitgcp, chimeraslayer, perm, prime-phylo, velvetoptimiser, saint, crac, grabix, phyutility, r-bioc-gviz, ray, spread-phy, r-other-mott-happy.hbrem, pycorrfit, rate4site, varscan, mapsembler2, flexbar, trimmomatic, blimps-utils, nast-ier, blat, bitseq, mach-haplotyper, ngsqctoolkit, discosnp, emperor, dnaclust, unc-fish, idba, r-cran-ape, openms, topp, parsinsert, aevol, fsa, biceps, ipig, kclust, circos, strap-base, freecontact, wigeon, fastaq, soapdenovo2, r-bioc-biostrings, seqan-apps, eigensoft, prodigal, modeller, arden, paraclu, situs, pyscanfcs Suggests: biomaj-watcher, mobyle-tutorials, r-cran-boolnet, mobyle-programs Ignore: mozilla-biofox removed: Depends: r-ape, sra-sdk, ray-denovoassembler, phy-spread | spread-phy, fas, vegan, dotur, r-other-mott-happy, bagphenotype Suggests: circos, pdb2pqr, seqan-apps, eigensoft, blimps-utils, python-rdkit, mozilla-biofox -med-his added: Depends: vista-foia removed: Depends: vista -med-bio-ngs added: Depends: kissplice removed: Depends: ssaha2 -med-practice added: Suggests: libctapimkt1 removed: Depends: freeicd Suggests: libctapimkt0 -med-imaging-dev added: Depends: libedf-dev, libpapyrus3-dev, libmialm-dev, r-cran-rniftilib, libvmtk-dev, libvtk-dicom0.4-dev, libinsighttoolkit3-dev | libinsighttoolkit4-dev, python-mia | python3-mia, octave-gdf, python-vmtk, python-mvpa2, libvigraimpex-dev, libteem-dev, python-vigra, libmia-2.2-dev, libmiaviewit-dev, python-mne Suggests: libics-dev, python-tifffile, libvtkedge-dev removed: Depends: libmia-2.0-dev, python-mvpa, libteem1-dev, libinsighttoolkit3-dev -med-imaging added: Depends: mia-viewit, vtk-dicom-tools, pixelmed-apps, conquest-common, teem-apps, gdf-tools, python-surfer, python-mvpa2, python-dicom, python-nibabel Suggests: conquest-mysql, trimage, conquest-dbase, openwalnut-qt4, conquest-sqlite, python-pyxid, conquest-postgres removed: Depends: conquest-dicom-server, python-mvpa, pixelmed-java, python-nifti Suggests: pysurfer, pyxid, openwalnut -med-bio-phylogeny added: Depends: spread-phy removed: Depends: phy-spread | spread-phy -med-bio-dev added: Depends: python-rdkit, libbambamc-dev, libgenome-1.3-dev, libfreecontact-perl, libhts-dev, libgenome-model-tools-music-perl, python-corepywrap, pyfai, libsnp-sites1-dev, libgenome-perl, libfreecontact0-dev, libssm-dev, python-biopython | python3-biopython, sbmltoolbox, python-csb | python3-csb, python-htseq, python-freecontact, libopenms-dev, librelion-dev Suggests: r-bioc-iranges, r-bioc-variantannotation, r-bioc-bsgenome, r-bioc-preprocesscore, r-bioc-shortread, r-bioc-affy, python-biopython-sql | python3-biopython-sql, python-biopython-doc, r-bioc-makecdfenv, libfreecontact-doc, libgtextutils-dev, r-bioc-affyio, librostlab-doc, r-bioc-hypergraph, r-bioc-biovizbase, r-bioc-genomeinfodb, librostlab-blast-doc, r-bioc-graph, r-bioc-xvector, r-bioc-genomicfeatures, r-bioc-annotationdbi, r-bioc-snpstats, r-bioc-rsamtools, r-bioc-altcdfenvs, r-bioc-genomicranges, r-bioc-genomicalignments, r-bioc-biomart removed: Depends: libqsearch-dev, iranges, libopenmm4-dev, librostlab-blast-doc, libgenome-1.3-0-dev, biostrings, librostlab-doc, python-biopython, python-librcsb-core-wrapper, octave-bioinfo -med-epi added: Depends: ushahidi -med-physics added: Depends: gdf-tools, biosig-tools Suggests: python-biosig, octave-biosig, python-multipletau, libbiosig-dev removed: Depends: biosig Checksums-Sha1: 85a12f4c53e48efd6faa2ca619c9884598694635 2735 debian-med_1.99.dsc 607e5caae5aeea9354e00a6b5bba6c1a19fa035f 101520 debian-med_1.99.tar.xz 45dbdab18b936d59e808a176e79a44cb556237b2 14284 med-tasks_1.99_all.deb 59f0924defc3fd8862a7bebdac4c0c3c481e85e5 14048 med-config_1.99_all.deb 1a993fbc0a4d40d55c93546de11a7d1f015053a5 15246 med-bio_1.99_all.deb a2cb4639c716f9b3cef6d2bc5b04e8a4b17d0529 12994 med-bio-dev_1.99_all.deb fc2dc0abb8f1ed17af7f127c38a516c91e0c1421 11972 med-cloud_1.99_all.deb e356b6a56b792e1b0dc3d98dbee5ec0da2de4392 11912 med-data_1.99_all.deb ad29720e954cbdcf8fbabbdd226600b2047e53b1 11894 med-dental_1.99_all.deb 7bfcad2fe54c6bbeca1c155f7d4684c7606878cd 12308 med-epi_1.99_all.deb f462a29bd461d946d4474c9a70ca95d95fc8f575 12084 med-his_1.99_all.deb 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