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Hash: SHA512
Format: 1.8
Date: Thu, 25 Jul 2024 20:07:36 -0400
Source: ncbi-blast+
Architecture: source
Version: 2.16.0+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Aaron M. Ucko <u...@debian.org>
Closes: 891197 1074316 1075867
Changes:
ncbi-blast+ (2.16.0+ds-1) unstable; urgency=medium
.
* New upstream release, which should be (more than) new enough for
recent q2-feature-classifier. (Closes: #1074316.)
* debian/control:
- Build against libnghttp2-dev, libsqlite3-dev, and libuv1-dev, newly
needed.
- Build against autoconf2.69.
- Build against libpcre2-dev, as enabled by debian/patches/allow_pcre2.
- Stop building against 2to3, which may not be around much longer.
* debian/patches: Update for new release, mostly formally.
* debian/patches/2to3 (new): Cache 2to3 diff for
windowmasker_2.2.22_adapter.
* debian/patches/allow_pcre2 (new): Allow use of PCRE2.
* debian/patches/series:
- Move system_mbedtls_only up in conjunction with incorporating part
of an upstream patch needed by support_mbedtls3.
- Comment out reprobuild; I'm all for reproducibility, but the package
already automatically builds with flags that make __FILE__ relative,
and many of its uses are in header-defined macros that intend to
pick up their callers' paths.
* debian/patches/support_mbedtls3 (new): Support (but don't require)
Mbed TLS 3.x. (Closes: #1075867.)
* debian/patches/system_mbedtls: Extend to cover ncbi_mbedtls.c (as in
https://github.com/ncbi/ncbi-cxx-toolkit-public/commit/f9c7297dd1)
and Makefile.xxconnect2.lib.
* debian/rules:
- Regenerate configure and config.h.in with Autoconf 2.69.
- Build against PCRE2, as enabled by debian/patches/allow_pcre2.
(Closes: #891197.)
- Tune flags: Add --without-strip to make --with-symbols effective;
switch off warnings from __DATE__/__TIME__ usage, since
dpkg-buildpackage's SOURCE_DATE_EPOCH injection should suffice.
- Extend generated-sources cleanup to objtools/eutils (not entirely
straightforward due to input format variation).
- Drop build-time 2to3 invocation in favor of debian/patches/2to3.
* debian/source/lintian-overrides: No more rapidjson10 (just ...11).
* Standards-Version: 4.7.0 (routine-update)
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