Package: wnpp Severity: wishlist Owner: Andreas Tille <ti...@debian.org>
* Package name : idba Version : 1.1.1 Upstream Author : Yu Peng <yp...@cs.hku.hk> * URL : http://i.cs.hku.hk/~alse/hkubrg/projects/idba_tran/ * License : GPL Programming Lang: C Description : iterative De Bruijn Graph De Novo short read assembler for transcriptome IDBA-Tran is an iterative De Bruijn Graph De Novo short read assembler for transcriptome. It is purely de novo assembler based on only RNA sequencing reads. IDBA-Tran uses local assembly to reconstructing missing k-mers in low-expressed transcripts and then employs progressive cutoff on contigs to separate the graph into components. Each component corresponds to one gene in most cases and contains not many transcripts. A heuristic algorithm based on pair-end reads is then used to find the isoforms. Remark: This package is maintained by the Debian Med team and the packaging is available at svn://anonscm.debian.org/debian-med/trunk/packages/idba/trunk/ -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20140213153806.31308.86901.report...@mail.an3as.eu
