On Thursday, April 30, 2015 05:13:03 PM Olivier Sallou wrote: > Package: wnpp > Severity: wishlist > Owner: Olivier Sallou <osal...@debian.org> > > * Package name : python-obitools > Version : 1.1.16 > Upstream Author : Eric Coissac > * URL : http://metabarcoding.org//obitools/ > * License : CeCILL-V2 > Programming Lang: Python > Description : set of programs specifically designed for analyzing NGS > data in a DNA metabarcoding contex > > The OBITools package is a set of programs specifically designed for > analyzing NGS data in a DNA metabarcoding context, taking into account > taxonomic information. OBITools enrich the Unix command line interface with > a set of new commands dedicated to NGS data processing. Most of them have a > name starting with the obi prefix. They automatically recognize the input > file format amongst most of the standard sequence file formats (i.e. fasta, > fastq, EMBL, and GenBank formats). Nevertheless, options are available to > enforce some format specificity such as the encoding system used in fastq > files for quality codes. Most of the basic Unix commands have their > OBITools equivalent (e.g. obihead vs head, obitail vs tail, obigrep vs > grep), which is convenient for scientists familiar with Unix. The main > difference between any standard Unix command and its OBITools counterpart > is that the treatment unit is no longer the text line but the sequence > record. As a sequence record is more complex than a single text line, the > OBITools programs have many supplementary options compared to their Unix > equivalents.
According to the trove information on pypi [1] this is python only, not python3. We were hoping to not increase the amount of python packages needing porting to python3. Have you discussed python3 plans with upstream? Scott K [1] https://pypi.python.org/pypi/OBITools/1.1.16 -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/21039320.xThH8BtM62@kitterma-e6430
