Hi,
for those who would like to join our next videomeeting it will happen at
https://www.timeanddate.com/worldclock/fixedtime.html?msg=Debian+CoViD-19+Biohackathon+Video+Conference&iso=20200515T20&p1=37&ah=1
in the Jitsi channel
https://meet.jit.si/DebianMedCovid19
See you
Andreas.
> On Fri, Apr 24, 2020 at 08:30:17AM +0200, Andreas Tille wrote:
> > Hi,
> >
> > sorry, I missed to set a new poll for todays Debian Med meeting so I
> > simply suggest to stick to 18:00 UTC which worked out nicely last week.
> > Feel free to check
> >
> >
> > https://www.timeanddate.com/worldclock/fixedtime.html?msg=Debian+CoViD-19+Biohackathon+Video+Conference&iso=20200424T20&p1=37&ah=1
> >
> > for your time zone. The Jitsi channel will remain the one used in the
> > official sprint period:
> >
> > https://meet.jit.si/DebianMedCovid19
> >
> > See you later hopefully
> >
> > Andreas.
> >
> > PS: For those who are seriously interested and who can not make it at
> > this time please let me know in private mail. I'll setup a new
> > poll for next week then.
> >
> > > On Wed, Apr 15, 2020 at 09:22:54PM +0200, Andreas Tille wrote:
> > > > Hi,
> > > >
> > > > there will be a formal summary of our sprint which I'd describe with the
> > > > short summary that we have approached in one week more than in usual two
> > > > monthes work. Thanks a lot to all who contributed - especially thanks
> > > > for an enormous support from ftpmaster (we had huge batches of accepted
> > > > packages in less than 24 hours!)
> > > >
> > > > Since the COVID-19 situation is by no means settled and as usual
> > > > successful work tends to create even more work we want to continue our
> > > > effort. So those who are interested to contribute the contact points
> > > > below remain valid. We also want to continue with video meetings. As a
> > > > first date we try an end-of-week meeting on Fridays (I'm open for better
> > > > suggestions why Friday is not so good and a different day of week should
> > > > be choosen). Here is a poll for the exact time for next Friday:
> > > >
> > > > http://whenisgood.net/hd53twx
> > > >
> > > > Looking forward to see you next Friday
> > > >
> > > > Andreas.
> > > >
> > > > On Fri, Mar 27, 2020 at 08:59:50PM +0100, Andreas Tille wrote:
> > > > > Dear Debian Community,
> > > > >
> > > > > There will be an virtual (online) COVID-19 Biohackathon from April
> > > > > 5-11,
> > > > > 2020 and the Debian Med team invite you help us improve biomedical
> > > > > FOSS
> > > > > and the tools/libraries that support those projects.
> > > > >
> > > > > Most tasks do not require any knowledge of biology or medicine, and
> > > > > all
> > > > > types of contributions are welcome: bug triage, testing,
> > > > > documentation,
> > > > > CI, translations, packaging, and code contributions.
> > > > >
> > > > > 1. Debian related bugs are viewable at [covid19-bugs]
> > > > >
> > > > > 2. Software awaiting packaging is listed at [covid-19-packages],
> > > > > please
> > > > > respond to the RFP with your intent so we don't duplicate work
> > > > >
> > > > > 3. You can also contribute directly to the upstream packages, linked
> > > > > from the Debian Med COVID-19 task page at [covid-19-packages]. Note:
> > > > > many biomedical software packages are quite resource limited, even
> > > > > compared to a typical FOSS project. Please be kind to the upstream
> > > > > author/maintainers and realize that they may have limited resources to
> > > > > review your contribution. Triaging open issues and opening pull
> > > > > requests
> > > > > to fix problems is likely to be more useful than nitpicking their
> > > > > coding
> > > > > style.
> > > > >
> > > > > 4. Architectures/porting: Please focus on amd64, as it is the primary
> > > > > architecture for biomedical software. A secondary tier would be arm64
> > > > > /
> > > > > ppc64el / s390x (but beware the endian-related issues on s390x). From
> > > > > a
> > > > > free/open hardware perspective it would be great to see more riscv64
> > > > > support, but that is not a priority right now
> > > > >
> > > > > 5. The Debian Med team is also trying to improve the availability of
> > > > > automated biomedical pipelines/workflows [robust-workflows] using the
> > > > > Common Workflow Language open standard. The reference implementation
> > > > > of
> > > > > CWL is written in Python and there are many open issues ready for work
> > > > > that don't require any biomedical background [cwltool-issues]
> > > > >
> > > > > 6. It is very easy to contribute to Debian Med team. We have a lowNMU
> > > > > policy for all our packages. Merge requests on Salsa are usually
> > > > > processed quickly (but please ping some of the latest Uploaders of the
> > > > > package to make sure it will be noticed). Even better if you ask for
> > > > > membership to the team and push directly to the salsa repository.
> > > > >
> > > > > 7. The [debian-med-team-policy] should answer all questions how to
> > > > > contribute.
> > > > >
> > > > > The main COVID-19 biohackathon is being organized at [covid-19-bh20]
> > > > > and
> > > > > for Debian's participation we are using [salsa-covid-19-bh20]
> > > > >
> > > > > [covid-19-bugs] https://blends.debian.org/med/bugs/covid-19.html
> > > > >
> > > > > [covid-19-packages] https://blends.debian.org/med/tasks/covid-19
> > > > >
> > > > > [covid-19-bh20] https://github.com/virtual-biohackathons/covid-19-bh20
> > > > >
> > > > > [salsa-covid-19-bh20]
> > > > > https://salsa.debian.org/med-team/community/2020-covid19-hackathon
> > > > >
> > > > > [robust-workflows] https://doi.org/10.1007/s41019-017-0050-4
> > > > >
> > > > > [cwltool-issues]
> > > > > https://github.com/common-workflow-language/cwltool/issues
> > > > >
> > > > > [COVID-19-advice]
> > > > > https://www.who.int/emergencies/diseases/novel-coronavirus-2019/advice-for-public
> > > > >
> > > > > [debian-med-team-policy] https://med-team.pages.debian.net/policy/
> > > > >
> > > > > Sincerely,
> > > > >
> > > > > Michael R. Crusoe on behalf of the Debian-Med team
> > > > >
> > > > > (and Andreas Tille on behalf of Michael R. Crusoe ;-) )
> > > > >
> > > > >
> > > > >
> > > > > --
> > > > > Michael R. Crusoe
> > > > >
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> > > > > -----END PGP SIGNATURE-----
> > > > >
> > > > >
> > > > > ----- End forwarded message -----
> > > > >
> > > > > --
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> > > >
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