#v+
   # In GNU, "/usr" is a four-letter word.
   NATIVE_SYSTEM_HEADER_DIR = /include
   #v-

I think that just changing NATIVE_SYSTEM_HEADER_DIR to:

NATIVE_SYSTEM_HEADER_DIR = $(prefix)/include

would fix all problems, could someone with a GNU/Hurd system check
that?  It would kinda break stuff for people who install gcc in
{/usr,/}local though...


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