To followup on the rebuilds done by Ross, I've also started a round of rebuilds.
At the same time I've fixed my ben setup for experimental, so we can now also track which packages in experimental are fixed already: http://linuxminded.nl/tmp/pkg-grass-transitions/experimental/html/netcdf.html Thanks to Alastair several reverse dependencies already have fixed versions available in experimental. They're still built against the old libraries because the new netcdf packages hadn't been built with netcdf (>= 4.3.3.1) yet, that's been corrected with the recent uploads to experimental. etsf-io (1.0.3-4 / 1.0.4-1~exp1) initially FTBFS, but succeeds when the build dependency on libnetcdff-dev is added. I've forwarded the patches in #793823. gnudatalanguage (0.9.5-2) still FTBFS due to missing libraries: /usr/bin/ld: cannot find -lhdf5_hl /usr/bin/ld: cannot find -lhdf5 /usr/bin/ld: cannot find -lcurl These are build dependencies of netcdf, so libnetcdf-dev should pull in their -dev packages. I've added the dependencies in netcdf (1:4.4.0~rc2-1~exp2), but that only resolves the missing curl library. gri (2.12.23-8) FTBFS due to #790526, this RC bug has scheduled it for removal from testing. gri (2.12.23-8) built successfully when Ross tested it. libpdl-netcdf-perl (4.20-1) FTBFS because it doesn't search the Multi-Arch library paths for netcdf.so. Exporting the Multi-Arch library path allows the build to succeed. I've forwarded the patch in #nnnnnn. magics++ (2.24.7-3) FTBFS because it's missing NetCDF C++, adding the libnetcdf-c++4-dev build dependency did not resolve it, so libnetcdf-cxx-legacy-dev was tried instead and it allows the build to succeed. Patch forwarded in #793882. minc (2.2.00-6) FTBFS because a NetCDF related test fails: FAIL: testminctools.sh ====================== Converted file to MINC2.0 format. ncvarid: ncid 65536: NetCDF: Variable not found Version: 1 (netCDF) FAIL testminctools.sh (exit status: 3) I've patched minc (2.2.00-6) to report verbose test output and ignore any test failures to allow the build to succeed. The patch is forwarded in #793885 in which I also asked the maintainer to help fix the test failure. nco (4.5.1-1) FTBFS with some errors: libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. \ -I/usr/include -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 \ -fstack-protector-strong -Wformat -Werror=format-security -std=c99 \ -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_bnr.c -fPIC -DPIC \ -o .libs/nco_bnr.o In file included from /usr/include/string.h:635:0, from nco_att_utl.h:22, from nco_att_utl.c:10: nco_sng_utl.h:79:3: error: expected identifier or '(' before '__extension__' strdup /* [fnc] Duplicate string */ ^ In file included from /usr/include/string.h:635:0, from nco_netcdf.h:46, from nco_aux.h:22, from nco_aux.c:19: nco_sng_utl.h:79:3: error: expected identifier or '(' before '__extension__' strdup /* [fnc] Duplicate string */ ^ This FTBFS issue has been reported in #793891 and will need to be resolved to not hinder the netcdf transition. ... The bugs filed for the netcdf transition have been usertagged for easy reference, see: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=netcdf-split-c-f-cxx;users=debian-gis@lists.debian.org Transition: netcdf libnetcdfc7 (1:4.1.3-7.2) -> libnetcdf7 (1:4.4.0~rc2-1~exp2) libnetcdfc++4 (1:4.1.3-7.2) -> libnetcdf-c++4-1 (4.2.1-1~exp3) [cxx4] libnetcdfc++4 (1:4.1.3-7.2) -> libnetcdf-c++4 (4.2-1~exp3) [legacy] libnetcdff5 (1:4.1.3-7.2) -> libnetcdff6 (4.4.2-1~exp4) The status of the most recent rebuilds is as follows. adios (1.8.0-2 / 1.8.0-3) OK / OK cdftools (3.0-1 / 3.0-2~exp1) FTBFS / OK cmor (2.9.1-5 / 2.9.1-6) OK / OK dx (1:4.4.4-7) OK etsf-io (1.0.3-4 / 1.0.4-1~exp1) OK / OK [patch] exodusii (6.02.dfsg.1-5 / 6.02.dfsg.1-6) OK / OK ferret-vis (6.9.3-1 / 6.9.3-2~exp1) FTBFS / OK gdal (1.10.1+dfsg-9 / 1.11.2+dfsg-1~exp4) OK / OK gnudatalanguage (0.9.5-2) FTBFS grace (1:5.1.25-1) OK grads (2:2.0.2-5 / 2:2.0.2-6) OK / OK gri (2.12.23-8) FTBFS kst (2.0.3-4) OK libpdl-netcdf-perl (4.20-1) OK [patch] magics++ (2.24.7-3) OK [patch] minc (2.2.00-6) OK [patch] nco (4.5.1-1) FTBFS ncview (2.1.5+ds1-1) TODO netcdf4-python (1.1.8-2) TODO oasis3 (3.mct+dfsg.121022-3 / 3.mct+dfsg.121022-4) TODO / TODO octave-octcdf (1.1.8-1) TODO ovito (2.3.3+dfsg1-1) TODO python-scientific (2.9.4-3) TODO r-cran-ncdf4 (1.13-1) TODO r-cran-rnetcdf (1.6.3-1-1) TODO ruby-netcdf (0.6.6-2) TODO v-sim (3.7.2-1) TODO vtk (5.8.0-17.5) TODO cdo (1.6.6+dfsg.1-3) TODO gmt (5.1.2+dfsg1-1) TODO metview (4.5.6-1) TODO ncl (6.3.0-3~exp1) TODO vtk6 (6.2.0+dfsg1-1 TODO Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 -- To UNSUBSCRIBE, email to debian-gis-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/55b7abdf.3040...@xs4all.nl
