Now that we understood the bug, I actually find strange that the
microcode update is fixing this, it looks like that the BMI2
instructions support has been added in a microcode update. Would it be
possible to give the output of /proc/cpuinfo with and without the
microcode update applied?

The /proc/cpuinfo without microcode update is already attached somewhere above in the bug report, the new one after update is as follows:

processor       : 0
vendor_id       : GenuineIntel
cpu family      : 6
model           : 60
model name      : Intel(R) Core(TM) i3-4000M CPU @ 2.40GHz
stepping        : 3
microcode       : 0x28
cpu MHz         : 2400.000
cache size      : 3072 KB
physical id     : 0
siblings        : 4
core id         : 0
cpu cores       : 2
apicid          : 0
initial apicid  : 0
fpu             : yes
fpu_exception   : yes
cpuid level     : 13
wp              : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid sse4_1 sse4_2 movbe popcnt tsc_deadline_timer xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 smep bmi2 erms invpcid xsaveopt dtherm arat pln pts md_clear flush_l1d vmx flags : vnmi preemption_timer invvpid ept_x_only ept_ad ept_1gb flexpriority tsc_offset vtpr mtf vapic ept vpid unrestricted_guest ple bugs : cpu_meltdown spectre_v1 spectre_v2 spec_store_bypass l1tf mds swapgs itlb_multihit srbds
bogomips        : 4788.76
clflush size    : 64
cache_alignment : 64
address sizes   : 39 bits physical, 48 bits virtual
power management:

Please note that "avx2" is once again missing due to the kernel masking flag from before that I once again forgot to remove before rebooting, and sorry for confusion it might cause -- that flag would normally be there.

Running a quick diff against old procinfo reveals that "flags" has the following new entries now:

tsc_deadline_timer ssbd ibrs ibpb stibp bmi1 bmi2 md_clear flush_l1d

> it looks like that the BMI2
> instructions support has been added in a microcode update

As such it does appear that indeed this is the case.

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