Hi, I've packaged golang-github-brentp-irelate, and it builds in a clean chroot with passing tests. Needs review and sponsorship. (Details of the package are below)
Kind regards Nilesh ---------- Forwarded message --------- From: Nilesh Patra <[email protected]> Date: Sat, 4 Jul 2020, 23:49 Subject: ITP: golang-github-brentp-irelate: Streaming relation testing of sorted files of intervals To: Debian Bug Tracking System <[email protected]> Package: wnpp Severity: wishlist Owner: Nilesh Patra <[email protected]> X-Debbugs-CC: [email protected] * Package name : golang-github-brentp-irelate Version : 0.0~git20180801.1bf7c8f+ds-1 Upstream Author : Brent Pedersen * URL : https://github.com/brentp/irelate <https://github.com/knsv/mermaid> * License : Expat Programming Lang: Golang Description : Streaming relation testing of sorted files of intervals Description: Streaming relation testing of sorted files of intervals Helps to relate (e.g. intersect or by distance) sets of intervals. For example, if the nearest gene to a set of ChIP-Seq peaks needs to be reported, BEDTools does this extremely well, irelate is an attempt to provide an API so that users can write their own tools with little effort in go. . Performance irelate is quite fast, but use PIRelate for parallel intersection. It is less flexible than irelate, but skips parsing of database intervals for sparse regions in the query. In addition, it has very good (automatic) parallelization. I shall maintain this package.
