Author: smoe-guest Date: 2008-07-14 16:28:46 +0000 (Mon, 14 Jul 2008) New Revision: 2229
Added: trunk/packages/plink/trunk/debian/patches/ trunk/packages/plink/trunk/debian/patches/dynamic.patch trunk/packages/plink/trunk/debian/patches/series Removed: trunk/packages/plink/trunk/debian/patches/ Modified: trunk/packages/plink/trunk/debian/changelog trunk/packages/plink/trunk/debian/control trunk/packages/plink/trunk/debian/copyright trunk/packages/plink/trunk/debian/rules Log: Preparing for upload. Modified: trunk/packages/plink/trunk/debian/changelog =================================================================== --- trunk/packages/plink/trunk/debian/changelog 2008-07-13 19:55:18 UTC (rev 2228) +++ trunk/packages/plink/trunk/debian/changelog 2008-07-14 16:28:46 UTC (rev 2229) @@ -1,6 +1,6 @@ -plink (1.02-1) unstable; urgency=low +plink (1.03p1-1) unstable; urgency=low - * Initial release (Closes: #nnnn). + * Initial release (Closes: #490832). - -- Steffen Moeller <[EMAIL PROTECTED]> Tue, 08 Apr 2008 17:49:32 +0200 + -- Steffen Moeller <[EMAIL PROTECTED]> Mon, 14 Jul 2008 17:36:22 +0200 Modified: trunk/packages/plink/trunk/debian/control =================================================================== --- trunk/packages/plink/trunk/debian/control 2008-07-13 19:55:18 UTC (rev 2228) +++ trunk/packages/plink/trunk/debian/control 2008-07-14 16:28:46 UTC (rev 2229) @@ -3,8 +3,8 @@ Priority: optional Maintainer: Debian-Med Packaging Team <[EMAIL PROTECTED]> Uploaders: Steffen Moeller <[EMAIL PROTECTED]> -Build-Depends: debhelper (>= 5), quilt, g++-3.3 -Standards-Version: 3.7.3 +Build-Depends: debhelper (>= 5) +Standards-Version: 3.8.0 Homepage: http://pngu.mgh.harvard.edu/~purcell/plink/ Package: plink @@ -17,3 +17,8 @@ It finds associations of single or pairs of DNA variations with a phenotype and can retrieve SNP annotation from an online source. + . + SNPs can evaluated individually or as pairs for their + association with the disease phenotypes. The joint + investigation of copy number variations is supported. + A variety of statistical tests have been implemented. Modified: trunk/packages/plink/trunk/debian/copyright =================================================================== --- trunk/packages/plink/trunk/debian/copyright 2008-07-13 19:55:18 UTC (rev 2228) +++ trunk/packages/plink/trunk/debian/copyright 2008-07-14 16:28:46 UTC (rev 2229) @@ -1,5 +1,5 @@ This package was debianized by Steffen Moeller <[EMAIL PROTECTED]> on -Tue, 08 Apr 2008 17:49:32 +0200. +Mon, 14 Jul 2008 17:30:41 +0200 It was downloaded from http://pngu.mgh.harvard.edu/~purcell/plink @@ -13,7 +13,7 @@ Copyright (C) 2004 Simon Urbanek, All rights reserved. - All other code (dcdflib.cpp has no copyright information): + All other code (dcdflib.cpp has no explicit copyright information): Copyright (C) 2005-2008 Shaun Purcell <[EMAIL PROTECTED]> @@ -22,8 +22,7 @@ This package is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by - the Free Software Foundation; either version 2 of the License, or - (at your option) any later version. + the Free Software Foundation; either version 2 of the License. This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of @@ -34,6 +33,9 @@ along with this package; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA +A neglectable minority of the source files also allow the redistribution +under a later license of the GPL. + On Debian systems, the complete text of the GNU General Public License can be found in `/usr/share/common-licenses/GPL'. Added: trunk/packages/plink/trunk/debian/patches/dynamic.patch =================================================================== --- trunk/packages/plink/trunk/debian/patches/dynamic.patch (rev 0) +++ trunk/packages/plink/trunk/debian/patches/dynamic.patch 2008-07-14 16:28:46 UTC (rev 2229) @@ -0,0 +1,13 @@ +Index: plink-1.03p1/Makefile +=================================================================== +--- plink-1.03p1.orig/Makefile 2008-07-14 18:18:53.000000000 +0200 ++++ plink-1.03p1/Makefile 2008-07-14 18:19:09.000000000 +0200 +@@ -44,7 +44,7 @@ + endif + + ifeq ($(SYS),UNIX) +- CXXFLAGS += -DUNIX -static ++ CXXFLAGS += -DUNIX + CXX = $(CXX_UNIX) + endif + Added: trunk/packages/plink/trunk/debian/patches/series =================================================================== --- trunk/packages/plink/trunk/debian/patches/series (rev 0) +++ trunk/packages/plink/trunk/debian/patches/series 2008-07-14 16:28:46 UTC (rev 2229) @@ -0,0 +1 @@ +dynamic.patch Modified: trunk/packages/plink/trunk/debian/rules =================================================================== --- trunk/packages/plink/trunk/debian/rules 2008-07-13 19:55:18 UTC (rev 2228) +++ trunk/packages/plink/trunk/debian/rules 2008-07-14 16:28:46 UTC (rev 2229) @@ -5,12 +5,13 @@ build: patch build-stamp build-stamp: - $(MAKE) CXX_UNIX=g++-3.3 CXXFLAGS=$(CFLAGS) + $(MAKE) CXX_UNIX=g++ WITH_R_PLUGINS=1 touch $@ clean: unpatch dh_testdir dh_testroot + $(MAKE) clean dh_clean build-stamp install-stamp install: install-stamp _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
