Author: plessy Date: 2008-07-17 01:12:33 +0000 (Thu, 17 Jul 2008) New Revision: 2247
Modified: trunk/community/infrastructure/getData/getData Log: Another way to get Jasper. This downloads the zip files in http://jaspar.genereg.net/html/DOWNLOAD/MatrixDir/. They can be indexed by the `jaspextract' tool of EMBOSS 6. Modified: trunk/community/infrastructure/getData/getData =================================================================== --- trunk/community/infrastructure/getData/getData 2008-07-16 15:32:12 UTC (rev 2246) +++ trunk/community/infrastructure/getData/getData 2008-07-17 01:12:33 UTC (rev 2247) @@ -208,6 +208,11 @@ "post-download" => "unzip `find ftp.ebi.ac.uk -name '*.zip'`" }, + "jaspar" => { + name => "The high-quality transcription factor binding profile database", + source => "wget -r -nH -nd -l1 --no-parent -A.zip http://jaspar.genereg.net/html/DOWNLOAD/MatrixDir/";, + }, + "jaspar.core" => { name => "Jaspar Core Database of transcription factor binding sites", source => "wget --mirror http://jaspar.genereg.net/html/DOWNLOAD/MatrixDir/JASPAR_CORE_2008/"; _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
