Author: smoe-guest Date: 2008-07-18 20:27:38 +0000 (Fri, 18 Jul 2008) New Revision: 2258
Modified: trunk/packages/mgltools/geomutils/trunk/debian/README.Debian trunk/packages/mgltools/geomutils/trunk/debian/README.source trunk/packages/mgltools/geomutils/trunk/debian/changelog trunk/packages/mgltools/geomutils/trunk/debian/copyright Log: Revision of copyright file, inspection of all files for their copyright. Modified: trunk/packages/mgltools/geomutils/trunk/debian/README.Debian =================================================================== --- trunk/packages/mgltools/geomutils/trunk/debian/README.Debian 2008-07-18 16:30:27 UTC (rev 2257) +++ trunk/packages/mgltools/geomutils/trunk/debian/README.Debian 2008-07-18 20:27:38 UTC (rev 2258) @@ -1,23 +1,27 @@ -mgltools-pybabel -================ +mgltools-geomutils for Debian +============================= -This package is part of the MGL (Molecular Graphics Labs at Scripps) -Python tools set for the computational and visual interaction -of protein structures and their ligands. Lintian warns about the -copyright-without-copyright-notice, which is an artifact of the source tar -file being extracted from a larger tar file that represents the MGLtools. +This package aims at providing the complete infrastructure for ligand +screening with Debian Linux. It is part of the MGL (Molecular Graphics +Labs at Scripps) Python tools set for the computational and visual +interaction of protein structures and their ligands. -The constraint to non-commercial research clearly renders the MGLtools -to be non-free and one could argue for it being acceptable for Debian at -all. SM was in contact with Sargis from the upstream developers and it -was confirmed that upstream is eager to see Debian packages to become -a reality. Actually, this may be a good opportunity to thank Sargis -Dallakyan <[EMAIL PROTECTED]> for his help in easing the compatibility -with Debian by accepting our patches and providing more himself. +The Debian community shall thank Sargis Dallakyan <[EMAIL PROTECTED]> +for his help in easing the compatibility with Debian by accepting our +patches and providing more himself. Also, the leader of the Molecular +Graphics Labs, Prof. Michael Sanner, is thanked for his support. +Please be continously reminded that that closer a software gets towards +identifying or further describing functional compounds in medicine, +the harder it is to get access to free (as in beer) solutions. And it +certainly does not get much closer than with the AutoDockToolkit. To +have the AutoDockToolkit with Debian is special and good for the world +as it spawns the development of new drugs. We will need to wait a bit +longer for a DFSG compatible license, though. + If you are a regular user of this package, your feedback to us packagers would much appreciated. The packaging is organised via the Debian-Med alioth project that has its own portal on http://debian-med.alioth.debian.org. - -- Steffen Moeller <[EMAIL PROTECTED]> + -- Steffen Moeller <[EMAIL PROTECTED]> Thu, 10 Jul 2008 00:06:50 +0200 Modified: trunk/packages/mgltools/geomutils/trunk/debian/README.source =================================================================== --- trunk/packages/mgltools/geomutils/trunk/debian/README.source 2008-07-18 16:30:27 UTC (rev 2257) +++ trunk/packages/mgltools/geomutils/trunk/debian/README.source 2008-07-18 20:27:38 UTC (rev 2258) @@ -1,5 +1,5 @@ -PyBabel -======= +mgltools-geomutils +================== The URL presented in debian/watch guides to a tar file as the source distribution of the MGLtools set. That tar file @@ -10,4 +10,13 @@ have decided to package each module individually, to foster the collaboration between similar applications. +The maintainers of the Debian package may decide to release +interim version from the upstream CVS source repository, +instead of waiting for an official release by the upstream +developers. + +For further details on how to prepare the source for the +packaging, please refer to +http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/BUILD?op=file&rev=0&sc=0 + -- Steffen Moeller <[EMAIL PROTECTED]> Modified: trunk/packages/mgltools/geomutils/trunk/debian/changelog =================================================================== --- trunk/packages/mgltools/geomutils/trunk/debian/changelog 2008-07-18 16:30:27 UTC (rev 2257) +++ trunk/packages/mgltools/geomutils/trunk/debian/changelog 2008-07-18 20:27:38 UTC (rev 2258) @@ -1,3 +1,21 @@ +mgltools-geomutils (5.2.cvs.20080713-1) experimental; urgency=low + + * New upstream version. + + -- Steffen Moeller <[EMAIL PROTECTED]> Sun, 13 Jul 2008 01:48:46 +0200 + +mgltools-geomutils (5.2.cvs.20080713) experimental; urgency=low + + * New upstream version. + + -- Steffen Moeller <[EMAIL PROTECTED]> Sun, 13 Jul 2008 01:47:41 +0200 + +mgltools-geomutils (5.2.cvs.20080713) experimental; urgency=low + + * New upstream version. + + -- Steffen Moeller <[EMAIL PROTECTED]> Sun, 13 Jul 2008 01:46:39 +0200 + mgltools-geomutils (1.5.1-1) experimental; urgency=low * Initial release. Modified: trunk/packages/mgltools/geomutils/trunk/debian/copyright =================================================================== --- trunk/packages/mgltools/geomutils/trunk/debian/copyright 2008-07-18 16:30:27 UTC (rev 2257) +++ trunk/packages/mgltools/geomutils/trunk/debian/copyright 2008-07-18 20:27:38 UTC (rev 2258) @@ -1,46 +1,98 @@ This package was debianized by Steffen Moeller <[EMAIL PROTECTED]> on -Thu, 20 Dec 2007 16:27:31 +0100. +Fri, 18 Jul 2008 21:57:59 +0200 It was downloaded from http://mgltools.scripps.edu Upstream Authors: - Molecular Graphics Laboratory <[EMAIL PROTECTED]> + The main development is performed by the researchers + and developers at the + Molecular Graphics Laboratory <[EMAIL PROTECTED]> + + led by + + Michael F. Sanner <[EMAIL PROTECTED]> + + with contributions by + + Anna Omelchenko <[EMAIL PROTECTED]> + Guillaume Vareille <[EMAIL PROTECTED]> + Sophie Cohn + qzhang + Michael F. Sanner + Sowjanya Karnati + Alex T. Gillet + + Major contributions in src/geomAlgorithms/*.{h,cpp} are + authored by Dan Sunday of softSurfer (www.softsurfer.com. + Copyright: - THE SCRIPPS RESEARCH INSTITUTE, <[EMAIL PROTECTED]> + The respective authors and the Scripps Research Institute + 1989-2008 Michael Sanner <[EMAIL PROTECTED]> + Major contributions in src/geomAlgorithms/*.{h,cpp} are + Copyright (C) 2001-2002 softSurfer (www.softsurfer.com) + License: - PLEASE READ THIS DOCUMENT CAREFULLY. IF YOU AGREE WITH THE TERMS - AND CONDITIONS OF THIS LICENSE AGREEMENT, AND WISH TO RECEIVE AND - USE THIS SOFTWARE. +All files distributed or redistributed in this package are subject +to the here presented license, regardless of the information +that is explicitly stated or omitted in the respective files +themselves. The original copyright holders have made respective +agreements regarding this redistribution. - 1. Grant Of Limited License; Software Use Restrictions. The programs - received by you will be used only for NON COMMERCIAL SCIENTIFIC - RESEARCH. This license is issued to you as an individual. For - institution wide use or commercial use of the software you will - have to follow the official registration procedure. To do so you can - contact us by e-mail ([EMAIL PROTECTED]), by mail (Michel Sanner, - TSRI, Molecular Biology Department, MB5, 10666 North Torrey Pines - Road, 92037 La Jolla) or by fax (858) 784-2860. - Some of the components have their own licensing specificities - that are described in the README file that is generated when you - download the software. We request that you read the content of - this file and comply to the requirements. - 2. Copying Restrictions. You will not sell or otherwise transfer these - programs or derivatives to any other party, whether with or - without consideration, for any purpose. - 3. Ownership of Software. You will not obtain, and will not attempt to - obtain copyright coverage thereon without the express purpose - written consent of The Scripps Research Institute. - 4. Limitation Of Liability. You will hold harmless from all or any expenses - you may incur as a result of or arising from your use, direct or indirect, - of these materials. You understand that no other right or license - to this program or its derivatives is granted or implied as a - result of our transmission of same to you. + 1. Grant Of Limited License; Software Use Restrictions. The programs + received by you will be used only for NON COMMERCIAL purposes. + This license is issued to you as an individual. -The Debian packaging is (C) 2007, Steffen Moeller <[EMAIL PROTECTED]> and -is licensed under the GPL, see `/usr/share/common-licenses/GPL'. + For COMMERCIAL use done with the software please contact Michel F. + Sanner for details about commercial usage license agreements. + + For any question regarding license agreements, please contact + Michel Sanner: + TSRI, Molecular Biology Department, TCP 26, + 10550 North Torrey Pines Road, La Jolla, CA 92037 + [EMAIL PROTECTED] + tel (858) 784-7742 + fax (858) 784-2341 + + 2. COMMERCIAL USAGE is defined as revenues generating activities. These + include using this software for consulting activities and selling + applications built on top of, or using this software. Scientific + research in an academic environment and teaching are considered + NON COMMERCIAL. + + 3. Copying Restrictions. You will not sell or otherwise distribute commercially + these programs or derivatives to any other party, whether with or without + consideration. + + 4. Ownership of Software. You will not obtain, and will not attempt to + obtain copyright coverage thereon without the express purpose written + consent of The Scripps Research Institute and Dr. Sanner. + + 5. IN NO EVENT SHALL THE AUTHORS OR DISTRIBUTORS BE LIABLE TO ANY PARTY + FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES + ARISING OUT OF THE USE OF THIS SOFTWARE, ITS DOCUMENTATION, OR ANY + DERIVATIVES THEREOF, EVEN IF THE AUTHORS HAVE BEEN ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + + 6. THE AUTHORS AND DISTRIBUTORS SPECIFICALLY DISCLAIM ANY WARRANTIES, + INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, + FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. THIS SOFTWARE + IS PROVIDED ON AN "AS IS" BASIS, AND THE AUTHORS AND DISTRIBUTORS HAVE + NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR + MODIFICATIONS. + +The contributions by softSurfer are put under the following license: + + This code may be freely used and modified for any purpose + providing that this copyright notice is included with it. + SoftSurfer makes no warranty for this code, and cannot be held + liable for any real or imagined damage resulting from it's use. + Users of this code must verify correctness for their application. + +The Debian packaging is (C) 2007-2008, Steffen Moeller <[EMAIL PROTECTED]> and +is licensed under the GPL, see '/usr/share/common-licenses/GPL'. _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
