Author: smoe-guest Date: 2008-07-28 22:29:41 +0000 (Mon, 28 Jul 2008) New Revision: 2358
Added: trunk/packages/mgltools/cmolkit/ Modified: trunk/packages/mgltools/cmolkit/trunk/debian/changelog trunk/packages/mgltools/cmolkit/trunk/debian/control trunk/packages/mgltools/cmolkit/trunk/debian/copyright trunk/packages/mgltools/cmolkit/trunk/debian/pycompat Log: Hm. Where is debian rules? Copied: trunk/packages/mgltools/cmolkit (from rev 2357, trunk/packages/mgltools/molkit) Property changes on: trunk/packages/mgltools/cmolkit ___________________________________________________________________ Name: svn:mergeinfo + Modified: trunk/packages/mgltools/cmolkit/trunk/debian/changelog =================================================================== --- trunk/packages/mgltools/molkit/trunk/debian/changelog 2008-07-28 17:55:44 UTC (rev 2357) +++ trunk/packages/mgltools/cmolkit/trunk/debian/changelog 2008-07-28 22:29:41 UTC (rev 2358) @@ -1,4 +1,4 @@ -mgltools-molkit (5.2.cvs.20080726-1) unstable; urgency=low +mgltools-cmolkit (5.2.cvs.20080726-1) unstable; urgency=low * Initial release. Modified: trunk/packages/mgltools/cmolkit/trunk/debian/control =================================================================== --- trunk/packages/mgltools/molkit/trunk/debian/control 2008-07-28 17:55:44 UTC (rev 2357) +++ trunk/packages/mgltools/cmolkit/trunk/debian/control 2008-07-28 22:29:41 UTC (rev 2358) @@ -1,4 +1,4 @@ -Source: mgltools-molkit +Source: mgltools-cmolkit Section: non-free/science Priority: optional Maintainer: Debian-Med Packaging Team <[EMAIL PROTECTED]> @@ -12,15 +12,15 @@ Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mgltools/molkit/trunk/ Homepage: http://mgltools.scripps.edu/ -Package: mgltools-molkit +Package: mgltools-cmolkit XB-Python-Version: ${python:Versions} Architecture: all -Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, mgltools-pybabel, mgltools-dejavu, mgltools-bhtree, mgltools-sff -Suggests: pdb2pqr -Description: Python classes to read and manipulate molecules - This package is part of the mgltools set of Python libraries which - provide an infrastructure for the analysis of protein structures and +Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends} +Suggests: gromacs +Description: Python classes to interpret trajectories of Gromacs + This package is an optional part of the mgltools set of Python libraries + which provide an infrastructure for the analysis of protein structures and their docking of chemical compounds. . - It provides a series of functions to calculate properties of - protein structures and allows performing local modifications. + It allows to read and analyse the trajectories of molecular dynamics + simulations performed with Gromacs. Modified: trunk/packages/mgltools/cmolkit/trunk/debian/copyright =================================================================== --- trunk/packages/mgltools/molkit/trunk/debian/copyright 2008-07-28 17:55:44 UTC (rev 2357) +++ trunk/packages/mgltools/cmolkit/trunk/debian/copyright 2008-07-28 22:29:41 UTC (rev 2358) @@ -5,7 +5,10 @@ Upstream Authors: - The main development is performed by the researchers + This packages takes code from Gromacs and prepares a + wrapper for Python. + + The Python development is performed by the researchers and developers at the Molecular Graphics Laboratory <[EMAIL PROTECTED]> @@ -16,71 +19,23 @@ with contributions by - Ruth Huey <[EMAIL PROTECTED]> - Michael F. Sanner <[EMAIL PROTECTED]> Anna Omelchenko <[EMAIL PROTECTED]> - William M. Lindstrom - Kevin Chan - Sophie COON - Sowjanya Karnati - Garrett M. Morris <[EMAIL PROTECTED]> - Sargis Dallakyan <[EMAIL PROTECTED]> - Daniel Stoffler + Gromacs is developed by - External contributors for pdb2pqr which is also - available on http://sourceforge.net/projects/pdb2pqr - are - - Jens Erik Nielsen <[EMAIL PROTECTED]> - Todd Dolinsky <[EMAIL PROTECTED]> - Nathan A. Baker <[EMAIL PROTECTED]> - David J. Heisterberg <[EMAIL PROTECTED]> - Mike Bradley + David van der Spoel, Erik Lindahl, Berk Hess, and others. - and the subpackage propka is contributed by - - HUI LI - ANDREW D. ROBERTSON - JAN H. JENSEN - TODD DOLINSKY - - which again comprises external contributions fro - - Michael Holst - - MALOC is written by Michael Holst - - pdb2pqr/config/compile is written by Tom Tromey <[EMAIL PROTECTED]> - - Copyright: The respective authors and the Scripps Research Institute 1992-2008 Michael Sanner <[EMAIL PROTECTED]> - PDB2PQR is Copyrigth (C) Jens Erik Nielsen 2002-2003, UCSD/HHMI - and Copyright (c) 2002-2007. Washington University in St. Louis. + Gromacs is + Copyright (c) 1991-2000, University of Groningen, The Netherlands. + Copyright (c) 2001-2004, The GROMACS development team, see gromacs.org. - Dept. of Biochemistry and Molecular Biophysics - Center for Computational Biology - Washington University in St. Louis - - MALOC = < Minimal Abstraction Layer for Object-oriented C > is - Copyright (C) 1994--2000 Michael Holst - - pdb2pqr/config/compile is Copyright 1999, 2000 Free Software Foundation, Inc. - Written by Tom Tromey <[EMAIL PROTECTED]>. - - pdb2pqr/config/ltconfig is copyright (C) 1996-1999 Free Software Foundation, Inc. - Originally by Gordon Matzigkeit <[EMAIL PROTECTED]>, 1996 - - pdb2pqr/config/missing is copyright 1996, 1997, 1999, 2000 Free Software Foundation, Inc. - Originally by Fran,cois Pinard <[EMAIL PROTECTED]>, 1996. - - License: All files distributed or redistributed in this package are subject @@ -132,36 +87,8 @@ NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS. - PDB2PQR is distributed under - the terms of the GNU General Public License as published by - the Free Software Foundation; either version 2 of the License, or - (at your option) any later version. + Gromacs is licensed under the GPL version 2 or any later version. -Comment by the package maintainer: it should however be noted, -that recently upstream has changed their license to a more liberal -license. PDB2PQR is currently being packaged for Debian, however there -seems an incompatiblity to prevail and thus this separate package -continues to be distributed with the mgltools. - - - MALOC and pdb2pqr/config/compile - come with the GPL license of version two or higher: - - This program is free software; you can redistribute it and/or modify it - under the terms of the GNU General Public License as published by the - Free Software Foundation; either version 2 of the License, or (at your - option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. - ee the GNU General Public License for more details. - - You should have received a copy of the GNU General Public License along - with this program; if not, write to the Free Software Foundation, Inc., - 675 Mass Ave, Cambridge, MA 02139, USA. - - The Debian packaging is (C) 2007-2008, Steffen Moeller <[EMAIL PROTECTED]> and is licensed under the GPL, see '/usr/share/common-licenses/GPL'. Modified: trunk/packages/mgltools/cmolkit/trunk/debian/pycompat =================================================================== --- trunk/packages/mgltools/molkit/trunk/debian/pycompat 2008-07-28 17:55:44 UTC (rev 2357) +++ trunk/packages/mgltools/cmolkit/trunk/debian/pycompat 2008-07-28 22:29:41 UTC (rev 2358) @@ -1 +0,0 @@ -2 _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
