Author: plessy Date: 2008-08-01 09:12:16 +0000 (Fri, 01 Aug 2008) New Revision: 2376
Added: trunk/packages/cluster3/trunk/debian/cluster3.1 Modified: trunk/packages/cluster3/trunk/debian/ trunk/packages/cluster3/trunk/debian/changelog trunk/packages/cluster3/trunk/debian/control Log: Added myself to Uploaders and built the manpage. Property changes on: trunk/packages/cluster3/trunk/debian ___________________________________________________________________ Name: mergeWithUpstream + 1 Modified: trunk/packages/cluster3/trunk/debian/changelog =================================================================== --- trunk/packages/cluster3/trunk/debian/changelog 2008-08-01 08:44:18 UTC (rev 2375) +++ trunk/packages/cluster3/trunk/debian/changelog 2008-08-01 09:12:16 UTC (rev 2376) @@ -1,10 +1,17 @@ -cluster3 (1.27-0.1) unstable; urgency=low +cluster3 (1.40-1) unstable; urgency=low + [ Steffen Moeller ] * New upstream release. * Improved on debian/rules. * Finally submitted ITP (Closes: Bug#286167). - -- Steffen Moeller <[EMAIL PROTECTED]> Sat, 18 Dec 2004 01:39:00 +0200 + [ Charles Plessy ] + * Initial release. + * Manpage built before source package generation, removed docbook-to-man + build dependancy. + + -- Charles Plessy <[EMAIL PROTECTED]> Fri, 01 Aug 2008 13:29:25 +0900 + cluster3 (1.25-0.2) unstable; urgency=low * Provides both the motif gui and command line interface. Added: trunk/packages/cluster3/trunk/debian/cluster3.1 =================================================================== --- trunk/packages/cluster3/trunk/debian/cluster3.1 (rev 0) +++ trunk/packages/cluster3/trunk/debian/cluster3.1 2008-08-01 09:12:16 UTC (rev 2376) @@ -0,0 +1,74 @@ +.TH "CLUSTER3" "1" +.SH "NAME" +cluster3 \(em Eisen-clustering of microarray data +.SH "SYNOPSIS" +.PP +\fBcluster3\fR [\fB-f \fIfilename\fR\fP] [\fB-l \fI0|1\fR\fP] [\fB-u \fIjobname\fR\fP] [\fB-g \fI[0..9]\fR\fP] [\fB-e \fI[0..9]\fR\fP] [\fB-m \fI[msca]\fR\fP] [\fB-k \fInumber\fR\fP] [\fB-s \fI0|1\fR\fP] [\fB-x \fInumber\fR\fP] [\fB-y \fInumber\fR\fP] +.SH "OPTIONS" +.IP "\fB-h\fP\fB\-\-help\fP" 10 +Show summary of options. +.IP "\fB-f \fIfilename\fR\fP" 10 +file loding +.IP "\fB-u \fIjobname\fR\fP" 10 +Allows you to specify a different name for the output files (default is derived from the input file name) +.IP "\fB-l \fI0|1\fR\fP" 10 +Specifies whether to log-transform the data (default is 0, no log-transform) +.IP "\fB-k \fInumber\fR\fP" 10 +Specifies whether to run k-means clustering instead of hierarchical clustering, and the number of clusters k to use (default: 0) +.IP "\fB-x \fInumber\fR\fP" 10 +Specifies the horizontal dimension of the SOM grid (default: 2) +.IP "\fB-y \fInumber\fR\fP" 10 +Specifies the vertical dimension of the SOM grid (default: 1) +.IP "\fB-s \fI0|1\fR\fP" 10 +Specifies whether to calculate an SOM instead of hierarchical clustering (default: 0) +.IP "\fB-v\fP \fB\-\-version\fP " 10 +Show version of program. +.PP +\-g [0..9] Specifies the distance measure for gene clustering +0: No gene clustering +1: Uncentered correlation +2: Pearson correlation +3: Uncentered correlation, absolute value +4: Pearson correlation, absolute value +5: Spearman's rank correlation +6: Kendall's tau +7: Euclidean distance +8: Harmonically summed Euclidean distance +9: City-block distance +(default: 1) +.PP +\-e [0..9] Specifies the distance measure for microarray clustering +0: No clustering +1: Uncentered correlation +2: Pearson correlation +3: Uncentered correlation, absolute value +4: Pearson correlation, absolute value +5: Spearman's rank correlation +6: Kendall's tau +7: Euclidean distance +8: Harmonically summed Euclidean distance +9: City-block distance +(default: 0) +.PP +\-m [msca] Specifies which hierarchical clustering method to use +m: Pairwise complete-linkage +s: Pairwise single-linkage +c: Pairwise centroid-linkage +a: Pairwise average-linkage +(default: m) +.SH "SEE ALSO" +.PP +mapletree (1), smile (1). +.SH "AUTHOR" +.PP +This manual page was written by Steffen Moeller [EMAIL PROTECTED] for +the \fBDebian\fP system (but may be used by others). Permission is +granted to copy, distribute and/or modify this document under +the terms of the GNU General Public License, Version 2 any +later version published by the Free Software Foundation. + +.PP +On Debian systems, the complete text of the GNU General Public +License can be found in /usr/share/common-licenses/GPL. + +.\" created by instant / docbook-to-man, Fri 01 Aug 2008, 13:32 Modified: trunk/packages/cluster3/trunk/debian/control =================================================================== --- trunk/packages/cluster3/trunk/debian/control 2008-08-01 08:44:18 UTC (rev 2375) +++ trunk/packages/cluster3/trunk/debian/control 2008-08-01 09:12:16 UTC (rev 2376) @@ -1,8 +1,9 @@ Source: cluster3 Section: non-free/science Priority: optional -Maintainer: Steffen Moeller <[EMAIL PROTECTED]> -Build-Depends: debhelper (>= 4.0.0), docbook-to-man, libmotif-dev, autotools-dev, perl +Maintainer: Debian-Med Packaging Team <[EMAIL PROTECTED]> +Uploaders: Steffen Moeller <[EMAIL PROTECTED]>, Charles Plessy <[EMAIL PROTECTED]> +Build-Depends: debhelper (>= 7), libmotif-dev, autotools-dev, perl Standards-Version: 3.6.1.1 Package: cluster3 _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
