Author: plessy Date: 2009-03-10 11:12:29 +0000 (Tue, 10 Mar 2009) New Revision: 3168
Modified: trunk/packages/last-align/trunk/debian/changelog trunk/packages/last-align/trunk/debian/control trunk/packages/last-align/trunk/debian/copyright Log: New upstream release. Modified: trunk/packages/last-align/trunk/debian/changelog =================================================================== --- trunk/packages/last-align/trunk/debian/changelog 2009-03-10 07:24:16 UTC (rev 3167) +++ trunk/packages/last-align/trunk/debian/changelog 2009-03-10 11:12:29 UTC (rev 3168) @@ -1,3 +1,15 @@ +last-align (42-1) unstable; urgency=low + + * New upstream release: + - Corrects an overflow error that made lastal discard some gapped + alignments. + - Allows lastal options to be set in the score-matrix file. + * debian/copyright refreshed and points directly to GPLv3. + * Corrected the description in debian/control to not use + the first person. + + -- Charles Plessy <[email protected]> Tue, 10 Mar 2009 19:46:32 +0900 + last-align (39-1) unstable; urgency=low * New upstream release. Modified: trunk/packages/last-align/trunk/debian/control =================================================================== --- trunk/packages/last-align/trunk/debian/control 2009-03-10 07:24:16 UTC (rev 3167) +++ trunk/packages/last-align/trunk/debian/control 2009-03-10 11:12:29 UTC (rev 3168) @@ -24,7 +24,7 @@ . The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 11-mers). - This allows us to map tags to genomes without repeat-masking, without becoming + This allows to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds. Modified: trunk/packages/last-align/trunk/debian/copyright =================================================================== --- trunk/packages/last-align/trunk/debian/copyright 2009-03-10 07:24:16 UTC (rev 3167) +++ trunk/packages/last-align/trunk/debian/copyright 2009-03-10 11:12:29 UTC (rev 3168) @@ -1,6 +1,6 @@ Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat Upstream-Author: Martin C. Frith, Michiaki Hamada and Paul B. Horton <[email protected]> -Upstream-Source: http://last.cbrc.jp/archive/last-39.zip +Upstream-Source: http://last.cbrc.jp/archive/last-42.zip Files: * Copyright: © 2008–2009 Martin C. Frith, Michiaki Hamada and Paul B. Horton <[email protected]> @@ -18,7 +18,7 @@ You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>. X-Comment: On Debian systems the full text of the GNU General Public License - can be found in the `/usr/share/common-licenses/GPL' file. + can be found in the `/usr/share/common-licenses/GPL-3' file. Files: CA_code/* Copyright: not copyrighted _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
